LOC118939487 (ogfod3)


Basic Information

Item Value
gene id LOC118939487
gene name ogfod3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 9238981 ~ 9255876 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945868.1
ATGAAGACTGTTGCTCAAACTCCAGTTGGTTCCATCCTGGACCTGCACTCTGGGGCACTGTCGATGGGGAAGCAGGTCTCAGGTCTCTAcagGCACTTTAGGGAGCAGATAATGGATGTATTCTCTGAAGAGGACGTCCGACTCAACAGGGAGGTGCGTGGTCGTATCCAGGCAGTGGTAGCAACGACCTTTGACCTGGACCCACCTCTTCTGTACCTCACCGAGCCCACCTTCTTCTCACGCGTCAACAGCACTCTGGCCAAGACACAGCAAGACGAGCACTGGCACCTTCACATAGACAAGGGTCAGAGAGACATCAACCCATCTCTCTTCCATTCctcgttctcttctcttcctcctcctccagcgTGAGTATAATTTTCTTCGGGGTCAGAGAACCTTCACCACGTAGAGCAGGTCTCG

Function

symbol description
ogfod3 Predicted to enable several functions, including L-ascorbic acid binding activity; dioxygenase activity; and iron ion binding activity. Located in membrane.

NR:

description
hypothetical protein, partial

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945868.1 True 423 mRNA 0.53 5 9238981 9255876

Neighbor

gene id symbol gene type direction distance location
LOC110491327 LOC106578881 coding upstream 1606 9234025 ~ 9237375 (+)
LOC110491323 NA coding upstream 67502 9163483 ~ 9171479 (+)
LOC110491321 mrpl38 coding upstream 95309 9084767 ~ 9143672 (+)
LOC110491320 LOC106578876 coding upstream 107588 9124217 ~ 9131393 (+)
LOC110492817 LOC106578874 coding upstream 130774 9091144 ~ 9108207 (+)
galk1 galk1 coding downstream 971342 10227218 ~ 10237422 (+)
llgl2 LOC106578897 coding downstream 981678 10237554 ~ 10270791 (+)
myo15b LOC106578894 coding downstream 1033977 10289853 ~ 10320827 (+)
LOC110491336 LOC106578893 coding downstream 1074202 10330078 ~ 10373090 (+)
LOC110491338 LOC106589448 coding downstream 1122947 10378823 ~ 10407995 (+)
G1338597 NA non-coding upstream 7157 9231314 ~ 9231824 (+)
G1338579 NA non-coding upstream 30241 9208399 ~ 9208740 (+)
G1338578 NA non-coding upstream 30869 9207827 ~ 9208112 (+)
G1338569 NA non-coding upstream 64985 9173810 ~ 9173996 (+)
G1338572 NA non-coding upstream 72961 9165803 ~ 9166020 (+)
G1338736 NA non-coding downstream 56446 9312322 ~ 9312624 (+)
G1338738 NA non-coding downstream 58506 9314382 ~ 9314587 (+)
G1338740 NA non-coding downstream 60273 9316149 ~ 9316401 (+)
G1338741 NA non-coding downstream 60905 9316781 ~ 9316988 (+)
G1338764 NA non-coding downstream 78853 9334729 ~ 9334933 (+)
G1338571 NA other upstream 55808 9178047 ~ 9183173 (+)
G1338523 NA other upstream 175835 9060652 ~ 9063146 (+)
LOC110492815 LOC106578870 other upstream 230237 8978243 ~ 9008786 (+)
G1337942 NA other upstream 599810 8637166 ~ 8639171 (+)
G1339018 NA other downstream 370063 9625939 ~ 9626400 (+)
G1339045 NA other downstream 446099 9701975 ~ 9702380 (+)
G1339525 NA other downstream 804002 10059878 ~ 10060130 (+)
G1341172 NA other downstream 2525852 11781728 ~ 11782891 (+)
LOC110492879 NA other downstream 2701650 11952562 ~ 11958858 (+)

Expression


Co-expression Network