LOC118939504 (LOC106578899)


Basic Information

Item Value
gene id LOC118939504
gene name LOC106578899
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 10181896 ~ 10185879 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036433.1
TCACCATTACTTATCATGGCAGGTGGATACTCTCTTATCGTAGCGATAAAGGAACGCAGAGTTAGAACTGTGGACTGTCTGTAtataagacaacacacacacacgtctcagaTCACTCATCCACAGGCATCTACAGGTGAACGAGTTCCACAGGTGACTGCTGAGGAGACCAGACATCACATCATGAAGTGGGCTATCGTTCTGTGTGCCGTGGTGGCACTCTCCGAATGCATCATCCAGGTGCCGCTGATCAAGGGGAAGAGTGCCAGGGAGAGCCTGGAGGAGCAGGGTCTGTGGAATGAGTACAGAGGGAAGTTCCCTTTCAACCCCACCAGGTTTGACGACCAGAGCCTATATGTCTCCAGCGAGCAGATGACCAACGACGCTGATTTGGCGTACTTTGGAGTGATCTCCATTGGAACTCCACCTCAGTCCTTCACTGTCATCTTTGACACTGGATCATCCAACCTGTGGATTCCCTCCGTCTACTGCAGCAGCGCAGCTTGCGCCAACCACAACAGGTTCAACCCCGGTTTGTCCTCTACCTTCAAGAATGCTGGGAAGAGCCTGTCCATCCAATACGGTACTGGCAGTATGACTGGCTTCGAGGGCTTTGACACCGTTGTGGTGGGTGGGATCCCTGTGAAGAACCAGATCTTTGGGCTGAGTCAATCGGAGGCTCCCTTCATGGCTCATATGAAGGCTGATGGTATCCTGTCTGGCTTACCCCCGCCTGGCTTACCCCCGCCTGGCTGCCTCTCAGGCCACACCAGTCTTTGACAACATGATGACCCAGCATCTGGTCAACCAGGACATGTTCTCTGTCTACCTGACTCGTAACTCTGCGGTAGGTAGCATGGTGACCTTCGGAGGCGTTGACACCAACCACTACTACGGCCAGATCGCATGGATCCCCCTGTCCTCTgagatgtactggcagatcacaGTCGACAGTGTGACTGTGAACGGCCAGATTGTGGCCTGTAACGGCGGCTGCCAGGCTATCGTGGACACCGGTACCTCTAATATTGTGGGACCTCAGGCCGACATCTCCAGCATGGCCCGTGCTGTGGGAGCCTACTCCGCCAACGGTGACaaTGTGGTGAACtgtaacaacatcaacaacatgccaTCGATGGTCTTCCACATCCACGGACAGGCCTTCACTCTCCCAGCCTCCACCTACGTccgccagTCTACCTACTATGGCTGCCGTACCGGTCTCTCGTCTAGTAGCTCCGACCTGTGGATTCTGGGTGACATCTTCATCCGACAGTACTATTCCATCTTCAGCAGAGCCCAGAACATGGTGGGTCTGGCCCTGGCTAGATAATCCAACACAGATCAACAATGGATCCCGTAACGCCATATGAACAACCAAATGAGGGTGTCTCTCCAGTGCAATCGTATCTATTCTAAAGCTAATTTGAGTAGTTTGTGATAGGAAGAGATACTGCTCTATGTCTAGAATTGTTATTAGTTCATTCAAAATATTAAAAAGGTTTTGGCATGATAAA

Function

NR:

description
pepsin A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036433.1 True 1517 mRNA 0.52 10 10181896 10185879

Neighbor

gene id symbol gene type direction distance location
LOC110491330 LOC106578899 coding downstream 10825 10167499 ~ 10171071 (-)
LOC118939488 NA coding downstream 228498 9951763 ~ 9953398 (-)
LOC110492818 cacna1g coding downstream 299508 9653845 ~ 9882388 (-)
LOC110491329 LOC106578906 coding downstream 583255 9592672 ~ 9598641 (-)
LOC110491328 LOC106578885 coding downstream 909151 9255867 ~ 9272745 (-)
LOC110492820 LOC106578899 coding upstream 9813 10195692 ~ 10199662 (-)
LOC118939505 LOC106578899 coding upstream 23597 10209476 ~ 10213292 (-)
trnaa-agc-6 NA coding upstream 40830 10226709 ~ 10226781 (-)
LOC100135963 LOC100135963 coding upstream 223564 10409443 ~ 10424041 (-)
LOC110492824 LOC106592390 coding upstream 274644 10460523 ~ 10466214 (-)
G1339609 NA non-coding downstream 21906 10159772 ~ 10159990 (-)
G1339605 NA non-coding downstream 29551 10152030 ~ 10152345 (-)
G1339601 NA non-coding downstream 31392 10150287 ~ 10150504 (-)
G1339586 NA non-coding downstream 50485 10131200 ~ 10131411 (-)
G1339556 NA non-coding downstream 90364 10091327 ~ 10091532 (-)
G1339738 NA non-coding upstream 30488 10216367 ~ 10221613 (-)
G1339747 NA non-coding upstream 44219 10230098 ~ 10231286 (-)
G1339756 LOC106578897 non-coding upstream 72955 10258834 ~ 10259893 (-)
G1339768 NA non-coding upstream 90129 10276008 ~ 10276227 (-)
G1339771 NA non-coding upstream 94684 10280563 ~ 10280841 (-)
G1339219 NA other downstream 478265 9703116 ~ 9703631 (-)
LOC110491322 LOC106589467 other downstream 1043226 9133541 ~ 9138698 (-)
G1338014 NA other downstream 1711752 8467208 ~ 8470144 (-)
G1337783 NA other downstream 1768829 8412771 ~ 8413067 (-)
LOC110492875 LOC106578856 other downstream 2375980 7777876 ~ 7806345 (-)
G1339765 NA other upstream 77395 10263274 ~ 10263742 (-)
G1340519 NA other upstream 838223 11024102 ~ 11025202 (-)
LOC110491342 LOC106578908 other upstream 1467161 11652429 ~ 11667766 (-)
G1341480 LOC106578921 other upstream 1804365 11946567 ~ 12097768 (-)
G1342941 NA other upstream 2513107 12698986 ~ 12700168 (-)

Expression

LOC118939504(LOC106578899) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2500.
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LOC118939504(LOC106578899) Expression in each Bioproject

Bar chart with 8 bars.
LOC118939504(LOC106578899) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2500.
End of interactive chart.

Co-expression Network