galk1 (galk1)


Basic Information

Item Value
gene id galk1
gene name galk1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 10227218 ~ 10237422 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946114.1
GCCAATCGCAGTGTAAAAACAAACCAGCTCAATTCAGGAAGTGAGTCAGCTGACACATGTCATATTATCACAATCATATTGTAACGTTAATCCAACTCCAAGAAAGATTTATTCGTTTAAAAAAACAATTGTAATACACTATTATTTATCGTGATTCAAACGGTATCTCACGTAAGATTCTAATGGTTGAAGTTTACAAAGTGCTGCTGCAGGATTTTGGACTCTGAATTCGTGATTTGTCTACTCTACTCGTCTGCTCCATTCATGGCCAGTCCAGTCCCGAGTGTGTCTGAGTTGGTTGCCGAGGCTCGACGTGTGTACGAGCAGAGCTTCGGGGGAGATGGTCCACAGGTGGCAGTGTGTGCCCCAGGCAGGGTCAACCTGATTGGGGAGCACATCGACTACAACCAAGGATTCGTCCTCCCTATGGCTCTGCCCATGGTGACGGTGGTGGTTGGCAGTAGGACCTCTGGCCAGAGTGCCTCCATCATTACTGCTGCTAAAGATGTGGAGGAGCCCAGGAGAGTGGACTTTGATTTGCCCAATGACAAGGCTCCTCTGTCTCCTGGGAAACCCAGCTGGGCCAATTATGTCAAAGGAGTTGTGCAGCACTACAGAGCTCCTCCAGTCCCAGGGTTCAGGGCAGTGATAGCCAGTAGTGTCCCTCTAGGGGGCGGTCTGTCCAGCTCAGCCTCTCTAGAGGTAGCCATGTACACATTCCTACAGCAGCTCAAGCCAGATGACGGGGACAAGGTGGCGAAGGCGGTGGCGTGCCAGAAGGCAGAACACACCCATGCAGGTGTGCCCTGCGGCATCATGGACCAGTTTGTCTCCGTGCTGGGCAGGGAGGCTCATGCTCTACTCATAGACTGCAGGTCTCTGGAGGCCACTCCTGTCCCTCTGTCAGACCCAGGCCTTGTCATCCTCATCAGTAACTCGAACGTGAAGCATTCTCTGACGGGCAGCGAGTACCCTAGCAGACGACGACAGTGTGAGGAGGCAGCTGCCATCTTGGAAAAGGCCAGCCTGAGAGATGCCACACTGAAGGATCTGGAGGATGCTAAGAGCCGATTGGACGATGAGACCTATCGAAGGGCTCGTCATGTAATTGAGGAGATAGAGCGGACGGCCCAGGCAGCAGAGGCCCTGAAGAAAGGGGCCTACAAAGAGTTTGGCAAACTCATGGTAGAAAGCCACAACTCACTCAGGGACTTGTATGAAGTGAGCTGCAAGGAGCTGGATGAGCTGGTGTCTGCAGCCGTAGAGGTggagggtgtgtttggcagcagGATGACAGGGGGAGGGTTTGGAGGATGTACCGTCACACTACTGCAGGCTGAAGCCATAGACAGGACCATGCAGCACATACAGAGGTCGTCTCAGTGCCTGAGGATGTTGAACCTAAACTCCCCGGACAGCAACACTTATAGCAACAGTAACTCCCTGTCGGATCCCGTGTCTCTCAACGTTGGCGGGGAGATCTACACCACGACCCTGGACACTCTGACACGCTACCAAGACTCCATGCTGGGGGCTATGTTCACCGGACAGATCTCCACGCTCCGGGACAAACAAGGAAACGTGTTCATCGACCGCGATGGGAAAGTTTTCCGCTATATCCTGAACTTCCTGCGTTCCAGCTCCCTGGACCTGCCGGAGGGGTTCTCTGAGATGAGGCTGCTGAGGAGGGAGGCAGATTTCTTCCAGATACGCCCCCTACTGGATGAGATACGGCGGCGCGTCGAGGCCGGACCGCTCAGCCTGAGAGACGCACCCAGAAGAGCCATGCTGCTGTTGGATGTGGactgccagGTACGCGTGCTACACTTCAACCTACGCCGTGCTCCCGAGAACTACGAACTCCGCACATGCTCAGTGCGCATCCTCACTGCCGAAATCTTCTGTACCTGGCGTGCCTTTCTGGTTCTCCTCTGTGAGCGCTTCTCATACCGTAACACCCAGGGTcctacctcccccctccccaGTGACCAGCGCCACAACCGGCTCAAACTGGAGTGGGTTCCCCGGCCAGACGAACTTCCCCAGGACCAGTATGAGAAACAGCAGTACCGAGGACTCGTCGTCTCGGACTCTTgggccacacagacacactctgggGACCTATGTGATGTCATCATCCCGCGCCGCAGCCCTTGTGAGGTCAAAGACATGCGCGGGTTTGTGGAGGAGCTGCTGACGGTGTCTCTGGCGGAGGGTTTTAGGGTCGACTCAGTGACCCCTGACCCCATGGACATTTTGAACTGCCGTACTCTGCAGCTTGTGCGTTAGTGATATAGCTCATTCCAGCTCACCACTGAACCACCAGTCATAGACTTACTAAAATAACAAAGGTCACCCTATATTGTTTCCAACCTACTGAAAATTACTGCTTatgaatggtctataactaacaGACTTTACTCACATTGGAAAGGTCGATCTATAATGTTTACAATCCTCTCTTTGATGTGAAGCTGAGACTGATCCTGCCATCTGAACCCTCTAACGAACTCTGACCTCAGTAGCCCTGCCGTGGAGTCCGTTCTAAACTGTAGGGTAGGCCTTCATCTGGTTTTACCGAATAGACCCTGTCCCCAACAATAAGGAATGGTTGTCAGCTTGTCCTGTTGATGATCAGTGCATTTgttaaagagagagatggagacagggtgtGTTAGAGTTTGTGGATTGTCTGTGAGAGAGTGTGCTGCGTTGGTAGGAGGGGTGATCCGACCATTCCACAGAGCGGGTATGAGTACATTTGTTGGTACTGTTTTGTAAAACAGTGTTACATTGTAATAAACTGACCAGTCTGTAGATATGTTTTCAGCTCATCAATTTAATAAAAACACTACTAAATGAA
>XM_036946115.1
GCCAATCGCAGTGTAAAAACAAACCAGCTCAATTCAGGAAGTGAGTCAGCTGACACATGTCATATTATCACAATCATATTGTAACGTTAATCCAACTCCAAGAAAGATTTATTCGTTTAAAAAAACAATTGTAATACACTATTATTTATCGTGATTCAAACGGTATCTCACGTAAGATTCTAATGGTTGAAGTTTACAAAGTGCTGCTGCAGGATTTTGGACTCTGAATTCGTGATTTGTCTACTCTACTCGTCTGCTCCATTCATGGCCAGTCCAGTCCCGAGTGTGTCTGAGTTGGTTGCCGAGGCTCGACGTGTGTACGAGCAGAGCTTCGGGGGAGATGGTCCACAGGTGGCAGTGTGTGCCCCAGGCAGGGTCAACCTGATTGGGGAGCACATCGACTACAACCAAGGATTCGTCCTCCCTATGGCTCTGCCCATGGTGACGGTGGTGGTTGGCAGTAGGACCTCTGGCCAGAGTGCCTCCATCATTACTGCTGCTAAAGATGTGGAGGAGCCCAGGAGAGTGGACTTTGATTTGCCCAATGACAAGGCTCCTCTGTCTCCTGGGAAACCCAGCTGGGCCAATTATGTCAAAGGAGTTGTGCAGCACTACAGAGCTCCTCCAGTCCCAGGGTTCAGGGCAGTGATAGCCAGTAGTGTCCCTCTAGGGGGCGGTCTGTCCAGCTCAGCCTCTCTAGAGGTAGCCATGTACACATTCCTACAGCAGCTCAAGCCAGATGACGGGGACAAGGTGGCGAAGGCGGTGGCGTGCCAGAAGGCAGAACACACCCATGCAGGTGTGCCCTGCGGCATCATGGACCAGTTTGTCTCCGTGCTGGGCAGGGAGGCTCATGCTCTACTCATAGACTGCAGGTCTCTGGAGGCCACTCCTGTCCCTCTGTCAGACCCAGGCCTTGTCATCCTCATCAGTAACTCGAACGTGAAGCATTCTCTGACGGGCAGCGAGTACCCTAGCAGACGACGACAGTGTGAGGAGGCAGCTGCCATCTTGGAAAAGGCCAGCCTGAGAGATGCCACACTGAAGGATCTGGAGGATGCTAAGAGCCGATTGGACGATGAGACCTATCGAAGGGCTCGTCATGTAATTGAGGAGATAGAGCGGACGGCCCAGGCAGCAGAGGCCCTGAAGAAAGGGGCCTACAAAGAGTTTGGCAAACTCATGGTAGAAAGCCACAACTCACTCAGGGACTTGTATGAAGTGAGCTGCAAGGAGCTGGATGAGCTGGTGTCTGCAGCCGTAGAGGTggagggtgtgtttggcagcagGATGACAGGGGGAGGGTTTGGAGGATGTACCGTCACACTACTGCAGGCTGAAGCCATAGACAGGACCATGCAGCACATACAGGTACGCGTGCTACACTTCAACCTACGCCGTGCTCCCGAGAACTACGAACTCCGCACATGCTCAGTGCGCATCCTCACTGCCGAAATCTTCTGTACCTGGCGTGCCTTTCTGGTTCTCCTCTGTGAGCGCTTCTCATACCGTAACACCCAGGGTcctacctcccccctccccaGTGACCAGCGCCACAACCGGCTCAAACTGGAGTGGGTTCCCCGGCCAGACGAACTTCCCCAGGACCAGTATGAGAAACAGCAGTACCGAGGACTCGTCGTCTCGGACTCTTgggccacacagacacactctgggGACCTATGTGATGTCATCATCCCGCGCCGCAGCCCTTGTGAGGTCAAAGACATGCGCGGGTTTGTGGAGGAGCTGCTGACGGTGTCTCTGGCGGAGGGTTTTAGGGTCGACTCAGTGACCCCTGACCCCATGGACATTTTGAACTGCCGTACTCTGCAGCTTGTGCGTTAGTGATATAGCTCATTCCAGCTCACCACTGAACCACCAGTCATAGACTTACTAAAATAACAAAGGTCACCCTATATTGTTTCCAACCTACTGAAAATTACTGCTTatgaatggtctataactaacaGACTTTACTCACATTGGAAAGGTCGATCTATAATGTTTACAATCCTCTCTTTGATGTGAAGCTGAGACTGATCCTGCCATCTGAACCCTCTAACGAACTCTGACCTCAGTAGCCCTGCCGTGGAGTCCGTTCTAAACTGTAGGGTAGGCCTTCATCTGGTTTTACCGAATAGACCCTGTCCCCAACAATAAGGAATGGTTGTCAGCTTGTCCTGTTGATGATCAGTGCATTTgttaaagagagagatggagacagggtgtGTTAGAGTTTGTGGATTGTCTGTGAGAGAGTGTGCTGCGTTGGTAGGAGGGGTGATCCGACCATTCCACAGAGCGGGTATGAGTACATTTGTTGGTACTGTTTTGTAAAACAGTGTTACATTGTAATAAACTGACCAGTCTGTAGATATGTTTTCAGCTCATCAATTTAATAAAAACACTACTAAATGAA
>XM_036946116.1
GTAAAAACAAACCAGCTCAATTCAGGAAGTGAGTCAGCTGACACATGTCATATTATCACAATCATATTGTAACGTTAATCCAACTCCAAGAAAGATTTATTCGTTTAAAAAAACAATTGTAATACACTATTATTTATCGTGATTCAAACGGTATCTCACGTAAGATTCTAATGGTTGAAGTTTACAAAGTGCTGCTGCAGGATTTTGGACTCTGAATTCGTGATTTGTCTACTCTACTCGTCTGCTCCATTCATGGCCAGTCCAGTCCCGAGTGTGTCTGAGTTGGTTGCCGAGGCTCGACGTGTGTACGAGCAGAGCTTCGGGGGAGATGGTCCACAGGTGGCAGTGTGTGCCCCAGGCAGGGTCAACCTGATTGGGGAGCACATCGACTACAACCAAGGATTCGTCCTCCCTATGGCTCTGCCCATGGTGACGGTGGTGGTTGGCAGTAGGACCTCTGGCCAGAGTGCCTCCATCATTACTGCTGCTAAAGATGTGGAGGAGCCCAGGAGAGTGGACTTTGATTTGCCCAATGACAAGGCTCCTCTGTCTCCTGGGAAACCCAGCTGGGCCAATTATGTCAAAGGAGTTGTGCAGCACTACAGAGCTCCTCCAGTCCCAGGGTTCAGGGCAGTGATAGCCAGTAGTGTCCCTCTAGGGGGCGGTCTGTCCAGCTCAGCCTCTCTAGAGGTAGCCATGTACACATTCCTACAGCAGCTCAAGCCAGATGACGGGGACAAGGTGGCGAAGGCGGTGGCGTGCCAGAAGGCAGAACACACCCATGCAGGTGTGCCCTGCGGCATCATGGACCAGTTTGTCTCCGTGCTGGGCAGGGAGGCTCATGCTCTACTCATAGACTGCAGGTCTCTGGAGGCCACTCCTGTCCCTCTGTCAGACCCAGGCCTTGTCATCCTCATCAGTAACTCGAACGTGAAGCATTCTCTGACGGGCAGCGAGTACCCTAGCAGACGACGACAGTGTGAGGAGGCAGCTGCCATCTTGGAAAAGGCCAGCCTGAGAGATGCCACACTGAAGGATCTGGAGGATGCTAAGAGCCGATTGGACGATGAGACCTATCGAAGGGCTCGTCATGTAATTGAGGAGATAGAGCGGACGGCCCAGGCAGCAGAGGCCCTGAAGAAAGGGGCCTACAAAGAGTTTGGCAAACTCATGGTAGAAAGCCACAACTCACTCAGGGACTTGTATGAAGTGAGCTGCAAGGAGCTGGATGAGCTGGTGTCTGCAGCCGTAGAGGTggagggtgtgtttggcagcagGATGACAGGGGGAGGGTTTGGAGGATGTACCGTCACACTACTGCAGGCTGAAGCCATAGACAGGACCATGCAGCACATACAGGAGCGATACGGTGGATCCCCAACTTTCTACATCACAACTCCCTCACAAGGAGCTCGGGTCATCAGTCTATGAAGAGCAAATACTACATTTTTCCATCATttccaaaaaaacaacaacacattccTATTGATTTTTCTAGGATCTTTTGTTCGCTTATGTAGCAATGTTTAATCAATCCTGTGGGGGTGAAATGAGCAGGAAAAAGCAATCTATTGTAAGACTTTTCTTCAGATATGAATACAGCTAGTAATTGCCAAGCACTAAAATCAAATAAAGTATAATCTCTTGTGGTTGCGTCTGAAAGACTGTAATAATGTTGTTTTGTACAATTACAAAAGTGCCATTAATATAGGATGATTGTTCCActataaataaacaataaacaatctgCTAAACTTCA

Function

symbol description
galk1 Predicted to enable galactokinase activity. Predicted to be involved in galactose metabolic process. Predicted to act upstream of or within carbohydrate phosphorylation. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in cataract and galactokinase deficiency. Orthologous to human GALK1 (galactokinase 1).

NR:

description
galactokinase isoform X2

GO: NA

KEGG:

id description
K00849 galK; galactokinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946114.1 False 2863 mRNA 0.52 9 10227218 10234236
XM_036946115.1 False 2422 mRNA 0.51 8 10227218 10234236
XM_036946116.1 True 1759 mRNA 0.49 8 10227230 10237422

Neighbor

gene id symbol gene type direction distance location
LOC118939487 ogfod3 coding upstream 971342 9238981 ~ 9255876 (+)
LOC110491327 LOC106578881 coding upstream 989843 9234025 ~ 9237375 (+)
LOC110491323 NA coding upstream 1055739 9163483 ~ 9171479 (+)
LOC110491321 mrpl38 coding upstream 1083546 9084767 ~ 9143672 (+)
LOC110491320 LOC106578876 coding upstream 1095825 9124217 ~ 9131393 (+)
llgl2 LOC106578897 coding downstream 132 10237554 ~ 10270791 (+)
myo15b LOC106578894 coding downstream 52431 10289853 ~ 10320827 (+)
LOC110491336 LOC106578893 coding downstream 92656 10330078 ~ 10373090 (+)
LOC110491338 LOC106589448 coding downstream 141401 10378823 ~ 10407995 (+)
LOC110491340 LOC106578890 coding downstream 332389 10569811 ~ 10572822 (+)
G1339633 NA non-coding upstream 10954 10215887 ~ 10216264 (+)
G1339626 NA non-coding upstream 27993 10185082 ~ 10199225 (+)
G1339598 NA non-coding upstream 79147 10147863 ~ 10148071 (+)
G1339587 NA non-coding upstream 95449 10131505 ~ 10131769 (+)
G1339581 NA non-coding upstream 104697 10122186 ~ 10122521 (+)
G1339648 NA non-coding downstream 46444 10283866 ~ 10284170 (+)
G1339649 NA non-coding downstream 47228 10284650 ~ 10284964 (+)
G1339660 NA non-coding downstream 67406 10304828 ~ 10305626 (+)
G1339664 NA non-coding downstream 86257 10323679 ~ 10325320 (+)
G1339665 NA non-coding downstream 88443 10325865 ~ 10326410 (+)
G1339525 NA other upstream 167088 10059878 ~ 10060130 (+)
G1339045 NA other upstream 524838 9701975 ~ 9702380 (+)
G1339018 NA other upstream 600818 9625939 ~ 9626400 (+)
G1338571 NA other upstream 1044045 9178047 ~ 9183173 (+)
LOC110492817 LOC106578874 other upstream 1132854 9091144 ~ 9108207 (+)
G1341172 NA other downstream 1544306 11781728 ~ 11782891 (+)
LOC110492879 NA other downstream 1720104 11952562 ~ 11958858 (+)
G1341689 NA other downstream 1986351 12223773 ~ 12229068 (+)
LOC110491388 LOC106578938 other downstream 2155532 12392917 ~ 12396813 (+)
LOC110491390 LOC106578939 other downstream 2164814 12402185 ~ 12403794 (+)

Expression


Co-expression Network