LOC110492826 (LOC106590946)


Basic Information

Item Value
gene id LOC110492826
gene name LOC106590946
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 11536438 ~ 11636884 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945870.1
ATGGTAGAAGGGGAATGTGGAAGGGGACGGTGGAAGGGGGCGGTGGAAGGGGACGGTGGAAGGGGACGGTGGAAGGGGACGGTGGAAAGGGACGGTGGAAGGGGACGGTGGAAGGGGACGGTGGAAAGGGACGGTGGAAGTGGACGGTGGAAGGGGACGGTGGAAGGGGACGGTGGAAAGGGACGGTGCAAAGGGACGGTGGAAGGGGACGGTGGAAGGGGACGGTGGAAGGGGACGGTGGAAGGGGACGGTGGAAAGGGACGGTGGAAGGGGACGGTGGAAGGGGACGGTGGAAAGGGACGGTGGAAAGGGACGGTGGAAAGGGACGGTGGAAGGGGACGGTGGAAGGGGACGGTGGAAGGGGACGGTGGAAAGGGACGGTGGAAGGGGACGGTGGAAGGGGACGGTGGAAAGGGACGGTGGAAAGGGACGGTGGAAGGGGACGGTGGAAGGGGACGGTGGAAAGGGACGGTGGAAGGGGACGAGGTGAACCCGGTCACTGTTCTGGTTAATGACACCAACCCTCGCGCCCTGCTGACGCGTCTCTGTCAAACCATGGCCACAGAGAAACTGCATGGAGTCGTGTTCGAGGACGATGTGGGATCAGGAGCTGGACCTCAgGTGGCAGAAGTGGCtcagatcctggacttcctgtcgaCTCAGACAGCTCTACCCATCATTGGCATCAGCGGAGGATCTGCCGTTGTCATACCTCACAAGacggcCGTAGCCCACACCAACGCCCACCCAGTCGGCAGAGAAATAACcgtggcaaccttggacctctcAGCTGAGGGTTCCACGTTCCTCCAGATGGGTGCATCACTGGAACAGCAGATTGTCTGCATGTTCAAGTTGATGGAGGAGTATGACTGGGGAGACTTTGTAGTCATCACAAGCATGTTGCCGGGATACGAGACATTTGTGGACTACGTCCGCTCCTACACGGACACGTCCTACTTCCTGTGGAGGCTGCAGGATATCCTGTCTCTGGAGATGTCTATCGGGACCAGCGATGTCCGCGCCAAACGCATGTTACAGCAGATTGACTCCCAGGTACTCGTAGCCTACTGCTCCCATGAAGAGGCCCAGTACCTGTTCCAGGTAGCAGGGGAGGTGGGTCTATTGGGGCCTGGCTACATCTGGATCCTCCCCTCCCTCGCGTTGGGCAACACAGAGAGCCCTTCACCTAGCAGCTTCCCCATAGGAGTGATTGGCGTCATCACCGACCAATGGAGGAAGAGCCTGAGGCAGCGGGTCAGAGAGGGAGTGGCCATAGTGGCCAAAGGGGCGGAGAGTTTCAAGAGGCATCAGGGGTTCGTTCCCGAGGGACACAGCGACTGCAACACACCAGTTACACACATTAACAACAACACACTGTTCAGaCACATGCTGAACGTGACATGGGAGCGTAAGGACCTGTCGTTTAATAGTGATGGTTACCTGACAAACCCTTCCATGGTCATCATCGCtttgaacagagacagacagtgggacaagGTGGGGACATTAGAGCGGGGTATCCTCCAGGTGCGTTATCCGGTGTGGCCTCGATATGGTAGTTTCCTCGAGCCGGTATCAGATGATCGCCACCTGACGGTAGCCACTTTGGAGGAGAGGCCCTTCGTCATCGTAGAGAACGTGGACCCCGACACGGGAACCTGTGTACGCAACACCGTGCCCTGCCGACGCCAGTCCAACCGCACCGAGAGTATTGTGGGTCACTCGGAGCCCTACACCAAGCTGTGCTGTAAGGGGTTCTGCATCGACATTCTGAAGAAACTGTCTCGCACCATCAAGTTCTCCTACGACCTCTACCTGGTCACTAACGGGAAACATGGAAAGATGATCAGTGGCATCTGGAACGGCATGATCGGAGAGgtgTTCTACAGGAAAGCAGACATGGCCATAGGTTCTCTCACCATAAATGAGGAGCGTTCTGAGATCATCGACTTCTCCGTGCCATTCGTCGAGACCGGCATCAGCGTCATGGTTGCCCGTAGCAATGGGACTGTCTCCCCCTCCGCCTTCCTCGagcCCTATAGCCCAGCGGTGTGGGTGATGATGTTTGTAATGTGCCTGACCGTGGTAGCTGTGACTGTATTCGTGTTCGAGTACTTCAGTCCTGTCGGCTACAACCGCAGCTTGGTCAGCGCTAAAGcggcAGGAGGTCCTACCTTCACCATAGGGAAGTCAGTGTGGTTGCTTTGGGGCATCGTGTTCAATAACTCAGTCCCCATCGAGAACCCTAAAGGAACCACCAGTAAGATCATGGTGCTGGTGTGGGCCTTCTTCGCGGTCATCTTCCTAGCCTCCTACACCGCCAACCTGGCTGCCTTCATGATCCAGGAGCAGTACATAGACACTGTGTCTGGACTGTCTGACAAGAAGttccaGAAGCCTCAGGAACACTACCCTCCATTCCGGTTTGGGACGGTCCCTAACGGCAGCACAGAGAGGAACATCAGGAGTAACTACCccgacatgcacgcacacatggtCAAATACAACCAAAAAGGAGTGGAGGATGCCCTCAACAGCCTTAAGACAGCGAAGCTGGATGCTTTTATCTATGATGCTGCGGTGTTGAACTACATGGCAGGGAAGGACGAGGGCTGTAAGCTTGTGACTATTGGCTCTGGGAAGGTGTTTGCTACAACGGGCTATGGTATCGCCCTGCAGAAAGACTCTCGATGGAAACGACCAATTGACCTGGCCTTATTGCAGTTCCTGGGAGATGgtgACACCCAGCGCTTGGAGACGGTCTGGCTGTCAGGCATCTGTCAGAATGAGAAGAACGAGGTGATGAGCAGTAAGCTGGACATAGACAACATGGCCGGGGTCTTCTACATGCTGCTGGTGGCCATGGGGCTCAGTCTGCTGGTGTTCTCCTGGGAACATCTACTCTACTGGAAACTTCACAAGGAACTAGACAAATCTCCCAGGATGGACTTCCTGCTCGCCATCAgcaggGGTATCTACAGTTGCTTCAACGGGGTGGAGGAACCAGACCTCCCTAACCTGGCCAACCCAGACCTGACAGCTAACTATGCCCAGGCTAACATGCTCAAGATGCTACGCACTGCTAAGGACCTGGTTAACTCCGCCCAAGTCGAGACCTCACTGGACCACGCCTCCAAGACCATAGAACACTGGGGACGCCATGGCGGCAGCCTGCCAGTCCACATTCCGCAGCAAGGCACCACGGAAACAGTCCCGGGAGGGTTCGCTTATGTCACAGAGAATACACACCTGCCCCCCGAGCGCCCCCTCAGCCCACAATACTGCACGCTGGGTGTAGCGACATCTGTGAACCAGCAGAGGGGGCTGGCGAGACCCACACCGCTACGATACACGCTCCCGGCTCGTACTTCCTCTCTCTACGACAGACCACTTCCTGTTTCTAGTCTCATTTGCCCTCACCTTGACCTGGCTGGGGGGGACCGCCTCTCTTCTTATCCTCACCCCTCCACAGGTAGGCTCTATGTGGACCCCCAACACCTTTCCCACCCCCgctctcccttcatcccctatAGTGAGCTCCAGCTCCCAGAcatctacctctcctctcacccaCCCTCTGCTGTCTCCCATCCCCCCCACACAGAGCCCtccaagaggaagaggaggagcaagAGCCTCCTCtcaggggagacaggaagaggaggaggacagaggaggcggCGCAGGGAGGAGAAGACGGTGTGCCTGGCTGAACTCCGGGCCAACCACCTCCAGGAAAACCACGTCTCGCCCCACATGCCTGACTCCCTGTACCCAGGAGCGGTGCTCTGTCCTGGGGAAGAGGGATGCGGTGGCTCCTGGCCTCTTCCTCTGGAGGAGCTCGTCCTAGCAGGCAGACGGCGGTGCCACCGACGGCCATCTTTCCTTCGAGCCACCTGGGGCAGCGAGCAGATTCGCCAGCCGGACGATACTCCGCCTACATCCCTCGATAGCCAATCACATTCTGCTTTACCAGACTTATTTCCCCGCGTCATGGTCGACCAAGAAACTCCCACTAAACTCTACAACCCCACCCCATTCCGGAACAACCTATGCTATCCTGCCGCCTCACCCCGCCAACATGCTTATCTTCATATAAGGCAGGACCAGAGGAAAGGAAACTCGCGTAAGAAGCTGCGGCACTCACACTCCACCCACCTGCCCACCTACAGGGAGGCCGTGCTGGGGGgccagggagggggaggtggggtAGGCCTGGGGGTGGTCCGGAGAACCACCAGCCTGCTCAGCAGACAGTACAACGACTATCTAACCTCCTACCCTGGGCTGCCTCTATACCACAGCCCCCTCAACCTCCAGACCCATTCCCCGGCGTCCAGCAACCACCCCAGCCCCGGTACCTACCGTATCCCCAACCCTGTATGCCAGCTCCTGGCCTGTGGAGGTGGCTGTCGAAGTCAGAGGGGGTTGTTGTACCAGGACAGTCTGTATGGAGCCTATGGAGCCTATGGAGGGGCCCAGGATCCGGACATAGAGCCCCAAAGAGGAGAGGGCTTGGTAGGGTTGAGGTCTGAGGACAGACCCTGTGTGACTCGGCCCTGGGGAAAAGTCTCTAGTCTGGAGTCAGaggtctgagagagacagacaaacactaCATACTTTATAGACTGGAATGTATACTGTAGAATATACGGTTGGAATTCCACATTGAAGATTTGTGATCCACAGGGACCGTTTCAGAGGGGGGTGGGATACTTCTCATACACAGAATCAGGTACGAGAAGGATATGTGCAGTAAaggagggaagctgagggttagGATTAATTTGATAGGTTGGACAGTTGAACTTCCGTCTTTCTTATTGAAGAGATAACGTAGAGTGTTTGACTGAATGTTAAGTGGCAATTTTGGAATAAGCATGAAACTGAAAGGATGTGTAGTGGAACACACCGTTCTGCAGATAGCTCAGCCTGGCACGGTGACGTCCTCTTTCACCAAACAGTTAGCATGCTGCGTACAGAGTTCCTACTGCAAACAAATAGAGAACATAGGAAGGGGGTAAAATGGGGGCGTTTTGGAGAGTGTGTTGGAGAGGATGGAAAGTTAATTTTACTTGCTGCTTTGAAACATTATATTCCTGTGTTTTGTGCATTATATTATgatatactatatataatatttatatataaatatatattattcatATATAATACCACGGTGTACAGAGTCGATAGTGTTGCTGTCTGGGACAAATGCGTctcagagagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagtccttGCCCGGGTTGTTTCCGAGCCACTGAGCCGAACAAGAGAGGAACAAGTCTTCAGTTCTCCATCtaagcaaaaaatatataatctcaCAACCATATACACTTAGAAATAACAAATATTCCCGATAGCTGAAACTGTTGACTGCCGTGTACAAGGCCATGGCAACCAAGCTACTGCATGTCTATAAGTAAGAGTACAATTAATGTATCTAGAGAAGAATTGCAATAAAGATGTTGTAGAAGCATAAGGGAGGATCAGTCCATATGAACGCACTCTGTATGTTTATAAGGAATACAGACAGCTGGCCAACCGAGtgacgcagcagtctaaggcactgcatcacagtgttgCAGCGTCACTACTGCCtggggttcgattccaggctgtgtctcaaccggccgtgaccgggagtcccatagggcggcgcaacAATTgccccagcatcgtccgggttaggggagggtttggctgggagGGCTttcttggctcatcgcgctctagcgactccttgggGCAGGCCGGGCTCCTCCAGGCTGACTTTAGtcatcagttgaacggtgtttcctccaacacattggtgcggatgacttccgggttaagctggcagggtgttaagaagcacggtttggcgggtaatgtttcagaggacgcatgattCGACCTTCGACTCTCccctgagcccgttggggagttggaatgatgagacaagattgtaatatCACCAGATTggggagggaaagggggtaaAATGACAAAATAAAGAAGGAATATGGACAGTTAAGTGTCTGTCTACAGTGTAATACAAAGATTTCAGCTGTAGAAGTGATCCCAGCGCAGATGCTGATCTACGGTCAGTTTTGTGTTCCTCCCTTATGGTTAAGGCTAGTTAAGGCTATGGATCATACATAGATCATGTATAGATAATATATAGGTAATATACAGATAATGTATAGATAATATTCATATAAT

Function

NR:

description
PREDICTED: glutamate receptor ionotropic, NMDA 2C-like

GO:

id name namespace
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005234 extracellularly glutamate-gated ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function

KEGG:

id description
K05211 GRIN2C; glutamate receptor ionotropic, NMDA 2C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945870.1 True 6239 mRNA 0.54 17 11536438 11636884
Loading

Neighbor

gene id symbol gene type direction distance location
ca10a LOC106578887 coding downstream 610233 10574498 ~ 10926205 (-)
LOC110491339 NA coding downstream 1067792 10463727 ~ 10468646 (-)
LOC110492824 LOC106592390 coding downstream 1070224 10460523 ~ 10466214 (-)
LOC100135963 LOC100135963 coding downstream 1112397 10409443 ~ 10424041 (-)
trnaa-agc-6 NA coding downstream 1309657 10226709 ~ 10226781 (-)
LOC110491342 LOC106578908 coding upstream 15545 11652429 ~ 11667766 (-)
LOC110491344 LOC106578909 coding upstream 80664 11717548 ~ 11726644 (-)
LOC118939489 LOC106578915 coding upstream 157455 11794339 ~ 11801864 (-)
si:dkey-21e13.3 LOC106578917 coding upstream 186519 11823403 ~ 11839246 (-)
LOC110491353 LOC106578918 coding upstream 203882 11840766 ~ 11844517 (-)
G1341339 NA non-coding downstream 298 11535505 ~ 11536140 (-)
G1341084 NA non-coding downstream 4008 11532224 ~ 11532430 (-)
G1341081 NA non-coding downstream 5872 11530355 ~ 11530566 (-)
G1341077 NA non-coding downstream 10683 11525550 ~ 11525755 (-)
G1341075 NA non-coding downstream 11533 11524495 ~ 11524905 (-)
G1341456 NA non-coding upstream 102732 11739616 ~ 11740408 (-)
G1341401 LOC106578914 non-coding upstream 141120 11778004 ~ 11781592 (-)
G1341502 NA non-coding upstream 208841 11845725 ~ 11846013 (-)
G1341521 NA non-coding upstream 277655 11914539 ~ 11915318 (-)
G1341523 NA non-coding upstream 293698 11930582 ~ 11930994 (-)
G1340519 NA other downstream 511236 11024102 ~ 11025202 (-)
G1339765 NA other downstream 1272696 10263274 ~ 10263742 (-)
G1339219 NA other downstream 1832807 9703116 ~ 9703631 (-)
LOC110491322 LOC106589467 other downstream 2397768 9133541 ~ 9138698 (-)
G1338014 NA other downstream 3066294 8467208 ~ 8470144 (-)
G1341480 LOC106578921 other upstream 353360 11946567 ~ 12097768 (-)
G1342941 NA other upstream 1062102 12698986 ~ 12700168 (-)
G1343278 NA other upstream 1614550 13251434 ~ 13251668 (-)
G1343452 LOC106578962 other upstream 1948252 13585136 ~ 13634178 (-)

Expression

LOC110492826(LOC106590946) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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LOC110492826(LOC106590946) Expression in each Bioproject

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LOC110492826(LOC106590946) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
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Co-expression Network