LOC110492879


Basic Information

Item Value
gene id LOC110492879
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 11952562 ~ 11958858 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946150.1
acacacacagggtgtttCCACACGTGTGTGGATGAACCATGTTAAGGTGTGTTTTGGGGCAGGATCCTAGTAAATTGACCTATCACACGTTGTGGTTGTAGGGGCCAGTCACAAGTGGATAGTGGAGGAAACGACAGCTGTCTACCATCAGACCAGCCGAACGGAGCAGACTAATATATTGAGTAGATTTTATTAAacttttattttcatttattgaTTGGTGTGAGTGAAAACTGTGTTACGAAATCTGGAGCAGAAGAGCAGAGAGCACCATCTCTACACAGCATGAccccggagagagagaggaggagGATAATGAGTTGTGAAGCAGCGAGGGCTAGGCGGAGAGCAGAGTCTCAGGTGTTGATTGACATGTCTcaactcctccctctcccttcctccctccgccCACAGCTAGACAAACCCTCCATCATACGACTAACCATCAGCTACCTACGCATACACACACTGCtctctggtacacacacacacacacacactcactttctctctcactcactcacaaacaaacaaacaaatacacacacccaGTCATGTTGTTTATGTCTCTTTATCCTAGGCTTTGCTGACCGACAGACGTGGGAGAGGAGGgacgaggagggagagagggaaacgagggaggagggagagagggaaacgagggagaggagggaggagggagggagagagaggtgggcgGAGGGAAATAGGGAGGCGGGAGACAGGGAGCTCGGGGAGAGGAGCGAGGAGCGAaagaaggagatgggggagacagATCTATACCTGAGGATTCTGGGTGGCTTTGTCGTCGTGGTAACGACAGAAGGAGACATGATCTACCTGTCAGATAACATCAGAGAATACATGGGTTTAACTCagGTGGAGTTGATGGGGCATAGCATATATGATTTCACACACCCCTCTGACCATGAGGAAATCAGAGACAACCTTGACCTCACTGCAGGGCGGAGCGGGTGTGGAGGACTGAGAGACTTTCTGATGAGGATGAAGTGTACAGTGACTCACAGAGGAAGAACTGTCAACCTCAGATCAGCCGGCTGGAGGGTGCTGCAGTGTCGCGGGTgtttgaaggtgtgtgtgtcaggaccCTCTCTTACTTGTGTGCTCTTCACCTGCCAGCCCctgtccctcacacacacactcctacacacacacaccttcaccagCCATCACAGCATGGACATGAGGTTCACTTACTGTGAccaaagggtGACTGGGTTGTTAAGTTATCGTCCAGAGGAGTTGCTGGGTGTCTCTATGTATGATCTGTGTCACACTCTGGACTTACACACTCTGACCAAAAGCCACCTGAaccTGTGTTCTAAGGGTCAGTCAGTGAGTGGGGTGTACAGGGTGTtggttagagggggagggtaCATGTGGGCAGAGACTCACAGTGCTGTCATCTCCAAACCCCGCCCAACGCAGCCACACCCATCACAGCCACACCAATCTAGACCCTCACCGCCACTCTTCGTCGCTTGTGTCACATACATCCTCAGTGGTGTTGAAGAGCCAACTCAGCTTCTGTCTCTGGGCCAGATGAACTGAGGGGAGTAACCTCTAGCCCCTCCCTGGACCTCTTTGAGGAAGGACATTTTTCATTCTACATAACAATTCTGCATTTTCTACATAAAATCTTAGCTTTATTTAGTATAGCTGTAGCTACATATTGTGAAACAGACACTGTGAAGATATTAATGTGATTAAGACTGTTTGCTAATAAATAATCATGTCCACTTCTGC
>XM_036946152.1
acacacacagggtgtttCCACACGTGTGTGGATGAACCATGTTAAGGTGTGTTTTGGGGCAGGATCCTAGTAAATTGACCTATCACACGTTGTGGTTGTAGGGGCCAGTCACAAGTGGATAGTGGAGGAAACGACAGCTGTCTACCATCAGACCAGCCGAACGGAGCAGACTAATATATTGAGTAGATTTTATTAAacttttattttcatttattgaTTGGTGTGAGTGAAAACTGTGTTACGAAATCTGGAGCAGAAGAGCAGAGAGCACCATCTCTACACAGCATGAccccggagagagagaggaggagGATAATGAGTTGTGAAGCAGCGAGGGCTAGGCGGAGAGCAGAGTCTCAGGTGTTGATTGACATGTCTcaactcctccctctcccttcctccctccgccCACAGCTAGACAAACCCTCCATCATACGACTAACCATCAGCTACCTACGCATACACACACTGCtctctgGCTTTGCTGACCGACAGACGTGGGAGAGGAGGgacgaggagggagagagggaaacgagggaggagggagagagggaaacgagggagaggagggaggagggagggagagagaggtgggcgGAGGGAAATAGGGAGGCGGGAGACAGGGAGCTCGGGGAGAGGAGCGAGGAGCGAaagaaggagatgggggagacagATCTATACCTGAGGATTCTGGGTGGCTTTGTCGTCGTGGTAACGACAGAAGGAGACATGATCTACCTGTCAGATAACATCAGAGAATACATGGGTTTAACTCagGTGGAGTTGATGGGGCATAGCATATATGATTTCACACACCCCTCTGACCATGAGGAAATCAGAGACAACCTTGACCTCACTGCAGGGCGGAGCGGGTGTGGAGGACTGAGAGACTTTCTGATGAGGATGAAGTGTACAGTGACTCACAGAGGAAGAACTGTCAACCTCAGATCAGCCGGCTGGAGGGTGCTGCAGTGTCGCGGGTgtttgaaggtgtgtgtgtcaggaccCTCTCTTACTTGTGTGCTCTTCACCTGCCAGCCCctgtccctcacacacacactcctacacacacacaccttcaccagCCATCACAGCATGGACATGAGGTTCACTTACTGTGAccaaagggtGACTGGGTTGTTAAGTTATCGTCCAGAGGAGTTGCTGGGTGTCTCTATGTATGATCTGTGTCACACTCTGGACTTACACACTCTGACCAAAAGCCACCTGAaccTGTGTTCTAAGGGTCAGTCAGTGAGTGGGGTGTACAGGGTGTtggttagagggggagggtaCATGTGGGCAGAGACTCACAGTGCTGTCATCTCCAAACCCCGCCCAACGCAGCCACACCCATCACAGCCACACCAATCTAGACCCTCACCGCCACTCTTCGTCGCTTGTGTCACATACATCCTCAGTGGTGTTGAAGAGCCAACTCAGCTTCTGTCTCTGGGCCAGATGAACTGAGGGGAGTAACCTCTAGCCCCTCCCTGGACCTCTTTGAGGAAGGACATTTTTCATTCTACATAACAATTCTGCATTTTCTACATAAAATCTTAGCTTTATTTAGTATAGCTGTAGCTACATATTGTGAAACAGACACTGTGAAGATATTAATGTGATTAAGACTGTTTGCTAATAAATAATCATGTCCACTTCTGC
>XM_036946151.1
TCACATCAGATCGTAGTGCAGAAAAGACGTTTAATATCACAACTAAAAATAGAGAATCAGTTCACAAACGTAATTGTTTTTAAATGATACATTATCTTATTCATAGTGCATTTCACCTGCATATATGCTCGAGTAACTGCATTGTATATTTGAGAATACACTCAGGTCTAAAATTactggcacccttgataaagacgaGCAGAAAATACAGTAGAAAATGAATCCCACTGTGTTTCCTTATTATTCAATCTTCAAGGAAACCTTTGACTCAGTCTTTCATGCCACAAGACAACCAGTCGGTCGACATGTGCCTAGTCAACACTTTTTAGGCATTAATGGGAACTCCATAGAAAGCGGGTGTTGTGGTGTGCCTTAGAAGTAGGGTACGAAGAGTTTACCCACCATgcaccccaccacacacactgtcattATCATTgtactatttctctctatctttctctctgtctctattccttAGGATAATGAGTTGTGAAGCAGCGAGGGCTAGGCGGAGAGCAGAGTCTCAGGTGTTGATTGACATGTCTcaactcctccctctcccttcctccctccgccCACAGCTAGACAAACCCTCCATCATACGACTAACCATCAGCTACCTACGCATACACACACTGCtctctggtacacacacacacacacacactcactttctctctcactcactcacaaacaaacaaacaaatacacacacccaGTCATGTTGTTTATGTCTCTTTATCCTAGGCTTTGCTGACCGACAGACGTGGGAGAGGAGGgacgaggagggagagagggaaacgagggaggagggagagagggaaacgagggagaggagggaggagggagggagagagaggtgggcgGAGGGAAATAGGGAGGCGGGAGACAGGGAGCTCGGGGAGAGGAGCGAGGAGCGAaagaaggagatgggggagacagATCTATACCTGAGGATTCTGGGTGGCTTTGTCGTCGTGGTAACGACAGAAGGAGACATGATCTACCTGTCAGATAACATCAGAGAATACATGGGTTTAACTCagGTGGAGTTGATGGGGCATAGCATATATGATTTCACACACCCCTCTGACCATGAGGAAATCAGAGACAACCTTGACCTCACTGCAGGGCGGAGCGGGTGTGGAGGACTGAGAGACTTTCTGATGAGGATGAAGTGTACAGTGACTCACAGAGGAAGAACTGTCAACCTCAGATCAGCCGGCTGGAGGGTGCTGCAGTGTCGCGGGTgtttgaaggtgtgtgtgtcaggaccCTCTCTTACTTGTGTGCTCTTCACCTGCCAGCCCctgtccctcacacacacactcctacacacacacaccttcaccagCCATCACAGCATGGACATGAGGTTCACTTACTGTGAccaaagggtGACTGGGTTGTTAAGTTATCGTCCAGAGGAGTTGCTGGGTGTCTCTATGTATGATCTGTGTCACACTCTGGACTTACACACTCTGACCAAAAGCCACCTGAaccTGTGTTCTAAGGGTCAGTCAGTGAGTGGGGTGTACAGGGTGTtggttagagggggagggtaCATGTGGGCAGAGACTCACAGTGCTGTCATCTCCAAACCCCGCCCAACGCAGCCACACCCATCACAGCCACACCAATCTAGACCCTCACCGCCACTCTTCGTCGCTTGTGTCACATACATCCTCAGTGGTGTTGAAGAGCCAACTCAGCTTCTGTCTCTGGGCCAGATGAACTGAGGGGAGTAACCTCTAGCCCCTCCCTGGACCTCTTTGAGGAAGGACATTTTTCATTCTACATAACAATTCTGCATTTTCTACATAAAATCTTAGCTTTATTTAGTATAGCTGTAGCTACATATTGTGAAACAGACACTGTGAAGATATTAATGTGATTAAGACTGTTTGCTAATAAATAATCATGTCCACTTCTGC
>TU1533489
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtagggtGACTGGGTTGTTAAGTTATCGTCCAGAGGAGTTGCTGGGTGTCTCTATGTATGATCTGTGTCACACTCTGGACTTACACACTCTGACCAAAAGCCACCTGAaccTGTGTTCTAAGGGTCAGTCAGTGAGTGGGGTGTACAGGGTGTtggttagagggggagggtaCATGTGGGCAGAGACTCACAGTGCTGTCATCTCCAAACCCCGCCCAACGCAGCCACACCCATCACAGCCACACCAATCTAGACCCTCACCGCCACTCTTCGTCGCTTGTGTCACATACATCCTCAGGTAGGAGGGGCCACAGAGTGTTCACGTTATGTATGCTGTAGCCATAGTCTTGTAAAGAGTATTTTAGAGATAGCATTGTAGAGATCATATTTAAGAGATAG
>TU1533491
ctcgtatgTCCTGTATTAGAGGCACTAACAAGATGCTCCCCCCCCCTCCAGTGTGTTCTAAGGGTCAGTCAGTGAGTGGGGTGTACAGGGTGTtggttagagggggagggtaCATGTGGGCAGAGACTCACAGTGCTGTCATCTCCAAACCCCGCCCAACGCAGCCACACCCATCACAGCCACACCAATCTAGACCCTCACCGCCACTCTTCGTCGCTTGTGTCACATACATCCTCAGTGGTGTTGAAGAGCCAACTCAGCTTCTGTCTCTGGGCCAGATGAACTGAGGGGAGTAACCTCTAGCCCCTCCCTGGACCTCTTTGAGGAAGGACATTTTTCATTCTACATAACAATTCTGCATTTTCTACATAAAATCTTAGCTTTATTTAGTATAGCTGTAGCTACATATTGTGAAACAGAC

Function

NR:

description
endothelial PAS domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946150.1 False 1767 mRNA 0.50 8 11952562 11958858
XM_036946152.1 False 1665 mRNA 0.50 9 11952562 11958858
XM_036946151.1 False 1934 mRNA 0.48 7 11952888 11958858
TU1533489 False 433 lncRNA 0.49 2 11957300 11957864
TU1533491 True 421 TUCP 0.50 2 11957526 11958797

Neighbor

gene id symbol gene type direction distance location
LOC110492827 LOC106589430 coding upstream 65974 11854692 ~ 11886588 (+)
LOC110491349 LOC106578916 coding upstream 158415 11790166 ~ 11794147 (+)
LOC110491348 LOC106578914 coding upstream 166201 11750790 ~ 11786361 (+)
prph2a LOC106578913 coding upstream 212163 11730859 ~ 11740399 (+)
LOC110491347 LOC106578912 coding upstream 223536 11727101 ~ 11729026 (+)
LOC100136067 gdh2 coding downstream 8431 11967289 ~ 11991296 (+)
LOC110492833 LOC106578928 coding downstream 284207 12243065 ~ 12271829 (+)
LOC110491387 LOC106578937 coding downstream 424889 12383747 ~ 12391454 (+)
LOC110491388 LOC106578938 coding downstream 434059 12392917 ~ 12396813 (+)
LOC110491390 LOC106578939 coding downstream 443327 12402185 ~ 12403794 (+)
G1341234 NA non-coding upstream 142053 11808608 ~ 11810509 (+)
G1341228 NA non-coding upstream 152165 11799894 ~ 11800397 (+)
G1341210 NA non-coding upstream 214260 11737731 ~ 11738302 (+)
G1341192 NA non-coding upstream 274054 11677812 ~ 11678508 (+)
G1341184 LOC106578908 non-coding upstream 289481 11659702 ~ 11663081 (+)
G1341287 NA non-coding downstream 28067 11986925 ~ 11987540 (+)
G1341152 NA non-coding downstream 33359 11992217 ~ 11993860 (+)
G1341297 NA non-coding downstream 69012 12027870 ~ 12028652 (+)
G1341311 NA non-coding downstream 96142 12055000 ~ 12055394 (+)
G1341314 NA non-coding downstream 99536 12058394 ~ 12058924 (+)
G1341172 NA other upstream 169671 11781728 ~ 11782891 (+)
G1339525 NA other upstream 1892432 10059878 ~ 10060130 (+)
G1339045 NA other upstream 2250182 9701975 ~ 9702380 (+)
G1339018 NA other upstream 2326162 9625939 ~ 9626400 (+)
G1338571 NA other upstream 2769389 9178047 ~ 9183173 (+)
G1341689 NA other downstream 264915 12223773 ~ 12229068 (+)
G1341820 NA other downstream 508582 12467440 ~ 12469121 (+)
G1342581 NA other downstream 1322583 13281441 ~ 13281819 (+)

Expression


Co-expression Network