LOC100136067 (gdh2)


Basic Information

Item Value
gene id LOC100136067
gene name gdh2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 11967289 ~ 11991296 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946153.1
GGAGGCGTCCAAGCCTTGGTGGTCAGCGCAGACTTAAAGTGAACGGGCGCGCACTTCCAACGGCCATTCAGTCGGAAGAGGGGACACAGTGAAGGTGTGCTGCTGTGCCGTTTAGTCATCCCTCCCTCTGACCGGTTAATAGATAGATAGAAACCCCCGTCGCTGTTGTTTTACTCCCCCCCCGTTAAACGGTTAGATCGATCATGTACCGGTACTTCGGGGAGCTGTTATCCCGCGGGGCGGGCAGTGCCCTGGCCTCGGGCTGCGTGGAATCTGCTCTCCCGGCATCGGCCGCTCTGATGCGGGTCCGACAGTATAGTGAACAGCCCGACGACCCCAACTTCTTTCGCATGGTGGAGGGTTTCTTCGACCGCGGAGCCGCCATCGTTCAGGACAAGCTTGTTGAGGACCTGAAGAGCAGGGAGACCCCCGAGCAGAAGATGAAACGAGTGAAGGGGATTCTCCGCATCATCAAGCCCTGCAACCACGTCCTCAGCGTCTCTTTCCCCATCAAGAGGGACAACGGAGagtgggaggtggtggagggctACCGCGCCCAGCACAGCCAGCACAGGACGCCCTGCAAGGGGGgGATCCGTTACAGTGAAGAGGTGTCTGTTGATGAGGTGAAGGCTCTGGCCTCTCTGATGACATACAAGTGTGCCGTGGTCGatgtacCATTCGGGGGGGCTAAAGCTGGTGTCAAGATCAACGTCAAAAATTACTCTgacAATGAGTTGGAGAAGATCACTAGAAGGTTCACCATTGAGCTGGCCAAGAAAGGTTTTATTGGGCCTGGTATTGATGTTCCTGCTCCTGACATgagcactggagagagagagatgtcctggATCGCTGACACATATGCCAACACCATCGCACACACCGACATCAACGCCCACGCGTGTGTGACAGGCAAGCCCATCAGTCAGGGCGGGATCCACGGGCGTATCTCGGCCACCGGTCGCGGAGTGTTCCATGGCATTGAGAACTTCATCAACGAGGCGTCCTACATGAGCATGCTGGGCCTGACCCCCGGCTTCCAGGACAAGACCTTCATcatccagggcTTTGGTAATGTGGGTCTCCACTCCATGCGGTACCTCCACAGGTACGGTGCTAAGTGTGTGGGCATCGCTGAGTATGACGGCAGCATCTACAACCCAGAGGGCATTGACCCCAAGCAGCTGGAGGACTACAAACTGcaacACGGTTCGATCGTAGGTTTCCCCGGGGCTAAGCCATACGAGGGCAGCCTTCTGGAAGCTCAGTGTCACATCCTGATCCCTGCCGCCAGCGAGAAGCAGCTCACACGAAACAACGCCCACAGGATCAAGGCCAAGATCATTGCTGAGGGAGCCAACGGCCCCACCACCCCTGATGCTGACAAGATCTTCCTGGAGAACAATGTCATGGTCATCCCTGACATGTACCTGAACGCCGGTGGTGTGACAGTGTCCTACTTTGAGTGGCTGAAGAACCTGAACCACGTCAGCTATGGAAGACTCACCTTCAAATACGAGAGAGACTCCAACTACCACCTCCTCAtgtctgttcaggaGAGTTTGGAGAGGAAGTTTGGAAAGCAGGGAGGACCAATCCCTGTTGTCCCCACCGCTGACTTCCAGGCCAGAGTCGCTGGAGCTTCTGAGAAGGACATTGTCCACTCTGGGCTGGCCTACACCATGGAGAGGTCTGccaggCAAATCATGCGTACAGCCAGTAAGTACAACCTGGGTCTGGACCTGCGGACGGCTGCGTACGTCAACGCCATCGAGAAGGTGTTCAAGGTCTACAACGAGGCCGGCATCACCGTCACATGATCACCTTGTCACAGCCAGACCACTCCCACACCACCCTGCTATTGGTTCACCCTGCTTCCCCATTTTTCCAATCAGCCTTCAGTACATACCAGTGTTTACATTAGAGACCCCCGCCTCCcgtttatacacacacactgacacgtaCTGTGTTCTGTGTCCCATGACCTCGCCACATCTCCCTGTATCACGTGGGTAACTCAGTATTCCTGTGTCCCATGACCTCACCACATCTCCCTGTATCACGTGGGTAACCCAGTATTCCTGTGTCCCATGACCTCGCCACATCTCCCTGTATCACGTGGGTAACCCAGTATTCCTGTGTCGTCCTGTTTCACTATTGTCGTTCAGTTTGTGAAAGAAGCAGATTGTAGCAGGAAGATAGCTttaagacccccccccctcctataaGAGTTCCCTTTTGGCCATTTTGTCTTGTTTGACCCTTGTGTTGCCATGGTTTCAGACCACAACAATGAAGTTGCCTTAGCTCTGACGGAGCTCTGTACTGAAAAGACACACATACTGAAATCCATTTAATGTTAACTCCGGACATATACTTTATTTAAAGAAAGAGATAGTTTTAAACTCTCACTTTATGTCAGGGAATGGTGATATATGTGTTCCTCGGTTCTCCTCGCAgcggggttagaggtcagggttagaggtcagggctcAGGGTTGTGCTGAGGAACACAGGGTTCTACTCCACTATATCAGTCCCCCCACAATCCCCCCTACCTTCTGCTCCTATCTTGTCCAATCTGACCCTCCCCCAAACCCTCCGCTCcgccatgagagagagaggaggagaggatcatGGGAACAAGCGTTCTCCTTCTCCAGAAAGCCGTCCAAGCCCTTGCACGGAAATTGCTTGGGGAAATTTGTATtgcctttttttttgttgaaaaccAATAAAATTCTGAGAACTGA

Function

symbol description
gdh2 Enables glutamate dehydrogenase (NAD+) activity. Involved in nitrogen compound metabolic process. Located in mitochondrion.

NR:

description
glutamate dehydrogenase, mitochondrial

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0016639 oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K00261 GLUD1_2, gdhA; glutamate dehydrogenase (NAD(P)+)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946153.1 True 2756 mRNA 0.54 13 11967289 11991296

Neighbor

gene id symbol gene type direction distance location
LOC110492879 NA coding upstream 8431 11952562 ~ 11958858 (+)
LOC110492827 LOC106589430 coding upstream 80701 11854692 ~ 11886588 (+)
LOC110491349 LOC106578916 coding upstream 173142 11790166 ~ 11794147 (+)
LOC110491348 LOC106578914 coding upstream 180928 11750790 ~ 11786361 (+)
prph2a LOC106578913 coding upstream 226890 11730859 ~ 11740399 (+)
LOC110492833 LOC106578928 coding downstream 251769 12243065 ~ 12271829 (+)
LOC110491387 LOC106578937 coding downstream 392451 12383747 ~ 12391454 (+)
LOC110491388 LOC106578938 coding downstream 401621 12392917 ~ 12396813 (+)
LOC110491390 LOC106578939 coding downstream 410889 12402185 ~ 12403794 (+)
LOC118939507 LOC106578942 coding downstream 460133 12449383 ~ 12519956 (+)
G1341234 NA non-coding upstream 156780 11808608 ~ 11810509 (+)
G1341228 NA non-coding upstream 166892 11799894 ~ 11800397 (+)
G1341210 NA non-coding upstream 228987 11737731 ~ 11738302 (+)
G1341192 NA non-coding upstream 288781 11677812 ~ 11678508 (+)
G1341152 NA non-coding downstream 921 11992217 ~ 11993860 (+)
G1341297 NA non-coding downstream 36574 12027870 ~ 12028652 (+)
G1341311 NA non-coding downstream 63704 12055000 ~ 12055394 (+)
G1341314 NA non-coding downstream 67098 12058394 ~ 12058924 (+)
G1341640 NA non-coding downstream 142091 12133387 ~ 12133748 (+)
G1341172 NA other upstream 184398 11781728 ~ 11782891 (+)
G1339525 NA other upstream 1907159 10059878 ~ 10060130 (+)
G1339045 NA other upstream 2264909 9701975 ~ 9702380 (+)
G1339018 NA other upstream 2340889 9625939 ~ 9626400 (+)
G1341689 NA other downstream 232477 12223773 ~ 12229068 (+)
G1341820 NA other downstream 476144 12467440 ~ 12469121 (+)
G1342581 NA other downstream 1290145 13281441 ~ 13281819 (+)

Expression


Co-expression Network