XLOC_032313 (tespa1)


Basic Information

Item Value
gene id XLOC_032313
gene name tespa1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 46697710 ~ 46722893 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063088
AAATGGTGTGTAACCGTGTTTCCCTCaccagtgtgtgcgtgtgtgtgtggccaCAACAAGTTGTCATTCTGCTCTTCACAGCAGCGCATCTTCCTCCTACCGCTTCCGTCAGTTACAGCGCGTCACCAAAGTTTGCGTCGGCGGTTCAACAATCGACCATGGCTCTCCATCTCGCAGgtattatttttagttatgcgGTGGATCTTCTTTAAGATGTAATTCTGTGAGGGGGATGCTGGACGCAGGAGCGGTGAATTACGCCGTTGCCGGGAGAATGGACGGTTCGAGGCACTTTTAAGGAGATCACAGAGATGGAGAGTCCTTCTAAGATTGAGAGACGGCAGGCGTGGGCGCTCAGCAGCCGCCGCAAGTTTACCGTCAGAGATGGAGAACACCGCAGCCCAACAGCAGACGATCAGCCCCACTTCTCTCTTCAAGATGACGTCTTTGTGGATGGATGCTCTGCAGGAAAGATTGAAAGCTGGCTCCAAGGTTGTGGGAGTGAAGCCAGCCCTGCCAAAAGCATTCACCTAGCAGGCTCTTTGAGGACAGGCGTCAGCTTTGAGGATGATCTGATTCTGGGAGCAGAAGCCACTGGATTATATGCCTCATCAAGTGCGCAACAATTTAGCACACCTCAACAGAAGCTTAACCTGCCATTGTACAGCATGGGTCAAAGTGTTGCTTCCAGCGCTTTCTCTACCACTACTGCCAGGACCGCTTCCAGTTTGTCTGAGGTCCTTCAGATGCGTGCAGAAGATGCAGAGGAAACCCTTTTCCAGTTGGGTTTTGGTTGCGAGGAACCACAAGTGACCGCTCGCATCCCAGTCCGCTTCTTCAACTTTCCGTCCCAGCTCCGAGGCATTAACTTCCGTTTGTTCCTCGAATCCCAGCTCTCAAGAATACGCCAGGAAGACCCCTGTCTTTCATTAGCAAGTCGTTTCCGACAAGTAGAAGCATTGACGGCAATGGCGAACGCCTTCTACTCGTTGTACTCCCATGTGTCCCGAACACCACTCCAAAAGCTCGCACCGCCCCAGTTAACCTTCACCTCCCCAATTGTGGAGAGGTCAAGGTCTCGAAACAGTGTCCGCAGTGAACCACGCTCCCCTGTTGAAAGACTAAAAGACACTATCTCCAAGATGTGCTTGTATACAGGATCTCGTGGTTCGGACTCTACGCCTCCAAACAACTCACCCCGAAAGCGTAAAAGTAGTCTCTCAGGTGTTGTGGAGAAGAGTgcagaaaataataatgatgacacCGAACAAGATTTATGCCTTCAAATGGAAGTAGATTATTTGGACCAAAACCTAGACTGGTTTATAGACAGCAGGACAGAACTTAACAATAGGACTTGTGAAGAAAACACTGAAAGGACTGATTACTCTGAGCCTATACCTTGTGAGTCACTATCTGGGATGACAAGTGAAAATGTACACAAGCACAGACACAGATTAGAAGAGTGTACACCATGCCTGGAGCCAAAAACGGACATGGACAAGAAGTCCAAAGGTTGTAATGTTGATTCTGTTCACATGAACAGATCTAGAGTTAATGTGGAACCAGTTCCTATCATCACCCATGATATCATTTGCCCTCAGGTTGTTGAATATGTGAAACAGGCACCTTATCGCTGCATGTACACAAATAATGTGGATGCCAAAGACTCACACCAGGCACACCAGGCAACAAATACACCCTCTGTAAGACAATCAAATTCTATGAACGTACCCAAGTCATTATGTCAGATCACAATCACTGGATGGGAGGATGACACCACCTTCCTCAATACACAGGAGCAGTGTTCAGCCAACATCAACAGCTATTTAACTCCAGTAAAACCACCAAACCTGAACAAGCAAGGCAACTCCTTTGAGCTGGAAGAGGTTCACAGTGCAGAAGAAGAGGAAGCCACTTCATCAGAATTCTGCTCTGCTGTCACATTATCCGTCTCACCACAGCATAACAAATCGTTGCCTCTCCGAGGGGACAGTTTCCAATCAGACAGCAGTGGATATGTAGAAGAGGAAGCACAACAGTCCCACTCCAGCCTGGAGAAAACGTAACATCAGAACTTGGACTAATGAAGAAGCACAGAGCATGTCTACTAATGCTGTTCAGGTCAACATGGAAGGGTGTTCGAGTGGTTTCACCCATAAGGAATTGATTGTGTTAACTTAATAGTAACTGCTGAATAAGACCAGAAGCATGTACAGAATTGAAGCCTGTTCACACCAAGCATGATAGCTatgaatattaatttaacaaCCCCGTGCAACCAGCAAATGTCCGCAATGTGCTACTAGTACATCTGAGCTACTAGTACAAAATGATTAATATAAGGTGGCACTGGTTATCACAgctgcctcacatcaagaaggtt
>TCONS_00063089
TTCTTTAAGATGTAATTCTGTGAGGGGGATGCTGGACGCAGGAGCGGTGAATTACGCCGTTGCCGGGAGAATGGACGGTTCGAGGCACTTTTAAGGAGATCACAGAGATGGAGAGTCCTTCTAAGATTGAGAGACGGCAGGCGTGGGCGCTCAGCAGCCGCCGCAAGTTTACCGTCAGAGATGGAGAACACCGCAGCCCAACAGCAGACGATCAGCCCCACTTCTCTCTTCAAGATGACGTCTTTGTGGATGGATGCTCTGCAGGAAAGATTGAAAGCTGGCTCCAAGGTTGTGGGTGAGTGTTTGTGGGTCTAAACGCTTtctataaaagtcattttgtgtcAGTTGTAGTACAATAACAACAAATGAGTGGAAAACCGCAAATGTTTTCTCTTTAAGGTCACGCAGGTTAAAAATAACATTAGCAATCTTTGAAGGTGAAGGACCTTGTTTTCGCAAAACACCTTCACCTGAATGCTTGTTGTGTGAATTATTTGATCTACATTGTTTTGCTCCATTTATAGACTACAGAGGAAGATTTTGTTTTCACATTTTCCCACTCTGTATCAGGAAATGGCAGAATAAGTTgagattattgttattgtttctCACTGTTGTGGCTTTGCAAGTTTCTTCAGGTGCAAGAAAAGCTTTAGAAAGAGTTTTGAAAACAATTTCAAAGAATAAGGATCAAAACATTTGGCTACATTTTAGATAAGGTGGCCTTATACA

Function

symbol description
tespa1 Predicted to enable signaling receptor binding activity. Predicted to act upstream of or within COP9 signalosome assembly and positive regulation of T cell receptor signaling pathway. Orthologous to human TESPA1 (thymocyte expressed, positive selection associated 1).

GO:

id name namespace
GO:0050862 positive regulation of T cell receptor signaling pathway biological_process
GO:0010387 COP9 signalosome assembly biological_process
GO:0005102 signaling receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120727-10 Predicted to enable signaling receptor binding activity. Predicted to act upstream of or within COP9 signalosome assembly and positive regulation of T cell receptor signaling pathway. Orthologous to human TESPA1 (thymocyte expressed, positive selection associated 1).

Ensembl:

ensembl_id ENSDARG00000053311

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063088 False 2386 mRNA 0.47 11 46697710 46722893
TCONS_00063089 True 732 lncRNA 0.42 3 46697914 46706578

Neighbor

gene id symbol gene type direction distance location
XLOC_032312 oxtrl coding upstream 10631 46668717 ~ 46687079 (+)
XLOC_032311 si:dkey-7k24.5 coding upstream 203626 46481024 ~ 46494084 (+)
XLOC_032310 stau1 coding upstream 242887 46431848 ~ 46454823 (+)
XLOC_032309 pbrm1l coding upstream 266113 46406565 ~ 46431597 (+)
XLOC_032308 FAM107A coding upstream 350732 46341306 ~ 46346978 (+)
XLOC_032314 CU639408.1 coding downstream 26613 46749506 ~ 46749624 (+)
XLOC_032315 NA coding downstream 47802 46770695 ~ 46975247 (+)
XLOC_032316 CU634018.1 coding downstream 147291 46870184 ~ 46870298 (+)
XLOC_032317 NA coding downstream 257224 46980117 ~ 46981872 (+)
XLOC_032318 CABZ01055225.1 coding downstream 555246 47278139 ~ 47278257 (+)
XLOC_032306 NA non-coding upstream 377182 46309736 ~ 46320528 (+)
XLOC_032304 BX663614.1 non-coding upstream 671747 46025846 ~ 46025963 (+)
XLOC_032300 LO018004.1 non-coding upstream 1092314 45605280 ~ 45605396 (+)
XLOC_032298 CABZ01009812.1 non-coding upstream 1342185 45355409 ~ 45355525 (+)
XLOC_032295 NA non-coding upstream 1614421 44987628 ~ 45083289 (+)

Expression


Co-expression Network