LOC110491388 (LOC106578938)


Basic Information

Item Value
gene id LOC110491388
gene name LOC106578938
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 12392917 ~ 12396813 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564793.2
AGTGCGTCACTTTCCGTCGACGCTGCCTCGGGAAAGACCCTTTTCGCCGGGTGATTTTGTCGAGGGAAGCTGGGTGTTCTGTAACAGTAACTACTCGCCATCTGACCTGTCCTTCATCTGGCATCATGACATACTACAAGTTCAGCGGTTTCAGCCAGAGGTTGACAGGGTCGGCACCGGCCACCGCCTACAGTCCGCAGGGTCTGAGGTCTGGTTTGCCAGCAGAGCCTCCCACCATGACGTTTGCTACACCCACCAAGATGGTGTCAGAGTCAGGGGCCATGGTGGAATACCTAGGGGTGAACAAGGTGCCATACTTCCAGAGACTGTTCcagACATCAGATGGCGTTCCAGTCCATCTGAAGAGAGGTGTCCCTGACAGACTGTTGTACCGCACCACCATGGCCCTGACAGTAGGAGGAGCACTTTACTGCCTCGTGGCCCTCTACATCGCTGCACAACCCAGGAAAACGACCTAAACCCAGTCCAGCCGTATATCCCCAGCCAAGTTCACCAGGGGTCTGTTCAGAAGGGCCCAACATTACAGAAGTGTTCAGATTCTTTATAATATTCTAGAAGTTTCACCTCACTGATGACACCCCTGGCTTGGCCCGGGATCAACTAACCCGACACCTATCACATCATCCACAGCTCGAGGACTGAAACTATACAGAGCCATTATGTTGATAATGAGGaggaacaaaaatatgaatgtaaTTATATGAGAAAgtgtgatgtctgtctgtcacattTGTATAAAAATAAGTTGATAAATGTGATAAAAAGTTAAATACCCA
>TU1533962
CCCTTTTCGCCGGGTGATTTTGTCGAGGGAAGCTGGGTGTTCTGTAACAGTAACTACTCGCCATCTGACCTGTCCTTCATCTGGCATCATGACATACTACAAGTTCAGCGGTTTCAGCCAGAGGTTGACAGGGTCGGCACCGGCCACCGCCTACAGTCCGCAGGGTCTGAGGTCTGGTTTGCCAGCAGAGCCTCCCACCATGACGTTTGCTACACCCACCAAGATGGTGTCAGAGTCAGGGGCCATGGTGGAATACCTAGGGGTGAACAAGGTGCCATACTTCCAGAGACTGTTCcagACATCAGATGGCGTTCCAGTCCATCTGAAGAGAGGTGTCCCTGACAGACTGTTGTACCGCACCACCATGGCCCTGACAGTAGGAGGAGCACTTTACTGCCTCGTGGCCCTCTACATCGCTGCACAACCCAGGAAAACGACCTAAACCCAGTCCAGCCGTATATCCCCAGCCAAGTTCACCAGGGGTCTGTTCAGAAGGGCCCAACATTACAGAAGTGTTCAGATTCTTTATAATATTCTAGAAGTTTCACCTCACTGATGACACCCCTGGCTTGGCCCGGGATCAACTAACCCGACACCTATCACATCATCCACAGCTCGAGGACTGAAACTATACAGAGCCATTATGTTGATAATGAGGaggaacaaaaatatgaatgtaaTTATATGAGAAAgtgtgatgtctgtctgtcacattTGTATAAAAATAAGTTGATAAATGTGATAAAAAGTTAAATACCCA
>TU1533964
CCCTTTTCGCCGGGTGATTTTGTCGAGGGAAGCTGGGTGTTCTGTAACAGTAACTACTCGCCATCTGACCTGTCCTTCATCTGGCATCATGACATACTACAAGTTCAGCGGTTTCAGCCAGAGGTTGACAGGGTCGGCACCGGCCACCGCCTACAGTCCGCAGGGTCTGAGGTCTGGTTTGCCAGCAGAGCCTCCCACCATGACGTTTGCTACACCCACCAAGATGGTGTCAGAGTCAGGGGCCATGGTGGAATACCTAGGGGTGAACAAGGTGCCATACTTCCAGAGACTGTTCcagACATCAGATGGCGTTCCAGTCCATCTGAAGAGAGGTGTCCCTGACAGACTGTTGTACCGCACCACCATGGCCCTGACAGTAGGAGGAGCACTTTACTGCCTCGTGGCCCTCTACATCGCTGCACAACCCAGGAAAACGACCTAAACCCAGTCCAGCCGTATATCCCCAGCCAAGTTCACCAGGGGTCTGTTCAGAAGGGCCCAACATTACAGAAGTGTTCAGATTCTTTATAATATTCTAGAAGTTTCACCTCACTGATGACACCCCTGGCTTGGCCCGGGATCAACTAACCCGACACCTATCACATCATCCACAGCTCGAGGACTGAAACTATACAGAGCCATTATGTTGATAATGAGGaggaacaaaaatatgaatgtaaTTATATGAGAAAgtgtgatgtctgtctgtcacattTGTATAAAAATAAGTTGATAAATGTGATAAAAAGTTAAATACCCAGTGATCCTCTGTCCTTTATTGGCATGGTTCCCAAAGCAGCCATCTGTGTCTCATCTGctccgaggcacagatctggggaagggtaccaaaataattctgcagaattgaaaggtccccaagaacacagtggcctccatcattcttaaatggaagaagtttggaaccaccaaaacttttcctagagctggctgcccggccaaactgagtaatcggggaggaagggtcttggtcagggaggtgaccaagaacccgatggtcactctgacagagctccatagttcctctgtggagatgggagaccatctctgcagcactccagcaatcaggcctttatggtagagtggccagacgcaagccactcctcagtaaaaggcacatgacagcccgcttggagttaaccaaaaggcacctaaagaactctgaccatgagaaacaagatttcattatttgacctgaatgccaagtgtcatgtctggaggaaacctggcaccatccctacagtgaagcatggtggtggcagtggtggggatgttttttagcagtagggactgggagacttgttaggattgagggaaagatgaacagagccaagtacagagagatccttgatgaaaacctgcttcggggcactcagaacctcagactggggcgaaggttcaccttccaacaggacaacgaccctaagcacacagccaagacaacgcaggagtggcttcggtacaaatctctgaatgtccttgagtggcccagccagagcccggacttgacccgtgattattattatttgaccatgctggtcatctatgaacattttaacatcttgcccatgttatgttataatctccacccggcacagccagaagaggactggccacccctcatatcctggttcctctctaggtttcttcctaggttctggcctttctagggtttTTTTCatcagctgatataagaagggctttataaatacatttgattgaccctgaaccccatccaacctgacagagcttgaaaggatctgcagagaagaattggagaaactccccaaatacaggtgtgccaagcttgtagcgtcatacc

Function

NR:

description
Cytochrome c oxidase subunit VIIa-related protein, mitochondrial precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564793.2 False 797 mRNA 0.50 3 12392917 12395733
TU1533962 False 760 TUCP 0.49 3 12392954 12395733
TU1533964 True 1840 TUCP 0.49 3 12392954 12396813

Neighbor

gene id symbol gene type direction distance location
LOC110491387 LOC106578937 coding upstream 1463 12383747 ~ 12391454 (+)
LOC110492833 LOC106578928 coding upstream 121088 12243065 ~ 12271829 (+)
LOC100136067 gdh2 coding upstream 401621 11967289 ~ 11991296 (+)
LOC110492879 NA coding upstream 434059 11952562 ~ 11958858 (+)
LOC110492827 LOC106589430 coding upstream 506329 11854692 ~ 11886588 (+)
LOC110491390 LOC106578939 coding downstream 6452 12402185 ~ 12403794 (+)
LOC118939507 LOC106578942 coding downstream 55696 12449383 ~ 12519956 (+)
LOC110491367 LOC106578945 coding downstream 149678 12545411 ~ 12563327 (+)
LOC110492834 LOC106578947 coding downstream 315200 12710933 ~ 13014608 (+)
LOC110491370 LOC106578952 coding downstream 862658 13258391 ~ 13267574 (+)
G1341707 NA non-coding upstream 37955 12354612 ~ 12354962 (+)
G1341752 LOC106578932 non-coding upstream 93427 12296931 ~ 12299490 (+)
G1341748 LOC106578930 non-coding upstream 113823 12277071 ~ 12279094 (+)
G1341746 LOC106578930 non-coding upstream 116739 12274684 ~ 12276178 (+)
G1341799 NA non-coding downstream 16342 12412075 ~ 12412343 (+)
G1341802 NA non-coding downstream 19914 12415647 ~ 12415900 (+)
G1341803 NA non-coding downstream 21123 12416856 ~ 12417109 (+)
G1341821 LOC106578942 non-coding downstream 61882 12457615 ~ 12471368 (+)
G1341689 NA other upstream 163849 12223773 ~ 12229068 (+)
G1341172 NA other upstream 610026 11781728 ~ 11782891 (+)
G1339525 NA other upstream 2332787 10059878 ~ 10060130 (+)
G1339045 NA other upstream 2690537 9701975 ~ 9702380 (+)
G1341820 NA other downstream 71707 12467440 ~ 12469121 (+)
G1342581 NA other downstream 885708 13281441 ~ 13281819 (+)
G1342713 LOC106578962 other downstream 1195555 13591288 ~ 13636378 (+)
LOC110491400 NA other downstream 1359183 13753527 ~ 13758332 (+)

Expression


Co-expression Network