LOC110491395 (LOC106578965)


Basic Information

Item Value
gene id LOC110491395
gene name LOC106578965
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 13659381 ~ 13667159 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564804.2
TTCATCTTGAGCCTTTTCTTCTGTTCCAGATGCATCTCCATCTTCTTTGTGGAGTTTCAGATGCACTTTGGAGTGGACTATTCAGGGACAGCCTGGATCCACAGTCTGGTGGACTGCACCACTATGCTGTGTGCTCCTCTAGGCAGCTTCATTGGGAACCGTCTGTCGTGCCGCATCGCTGTGATCCTTGGTGGCTTTCTGTCCTCCATCGGCCTGGTCCTCAGCTCTTTCGCTACCAGCCTGGAGTACCTGTACCTCACCCTGGGGGTCCTCACAGGTATTGGATTTGCCCTCTGCTACACCCCTGCCATAGCCATGGTGGGCTCATATTTCTGTGAAAGGAAAGCCCTGGCGTACGGGATCGCCATGTCAGGCAGTGGCATCGGGACCTTCATCCTGGCCCCTGCCGTCCAGATACTCATAGAGCACTACTCATGGCGTGGGGCCCTGCTCATCCTAGGGGGTGTTGTTGCcaacctgtgtgtttgtggggcaTTACTGCGCCCTATCActctgaaagaagaagaggaggctCATGGTCCAATCCCATTGGACACCGAGTGTGGATATGGGGTGAAAGCTCCGGTGGTTAGCATGTTAGAGGAATCACTGgcgatcaacaacaacaacagccaccgcTGCTTCTGTTTCCAGTCCATGCAGGAGTACTGCTTCCTGCTCATGCCTGACTTCCTGATGCTGGCAGTGAGCTTCTTGTTCCTAGCCAGTGGCTGCAGTCTGCCCTTCGTTTACCTGGTTCCGTATGCACTGGACGTGGGTGTGACCCACCACCAGGCCGCCTTCCTCATGTCCATCCTGGGGGTCATTGACATCGTGGGGAACATCACCTTCGGCTGGCTCGTAGACAGGAGGTGCCTGAAGAAGTATCATAATGTGTGCTACATGATAGCAGTGGGCATGGAGGGGGTGTGCtgcctcttcatccctctcctgcGGACGTTCGCCCTGCTGGTGCCTTTCTCTGTGTTTTATGGGTACTTTGATGGCGCCTACGTTGCCCTCATACCTGTGGTGACCTCGGACATTGTGGGGACACATAACCTCTCCTCCGCCCTAGGGATTGTCTACTTCCTACATGCCATTCCTTACCTGCTCAGCCCTCCAATAGGAGGCTGGCTGGTTGACACCACAGGCACCTACACGGCCACCTTCTTCCTCAGTGGCTTTGCCCTCATCTCCAGCTCCCTGGTCATCAGCACGGTGACGGGGATACGCCACTGTCGCAGGACCCAAAAGCACAGAaccaaaaataaaaacacagacCCCAAACAGGAGCCTTGCCGATCAGACTTCTACACAGCCTCAAGTAAAGATGTGAACCCTTCAGTCAACACAGCAAATTCTTAACATTGGACGCTTTTGTGTAATTATGCATTTGTTTTGTTAGAATATCAAAGCACATTGAAGATTATGAGAAACGGTCATCAACTGGTACACATAATCTAGCGTGATAGTTCAGAATTGGGAATGACTTCCCTCAGATGCTAAATGGACACTAAAtggaaggtacagtgccttgcgaaagtattcggcccccttgaactttgcgaccctttgccacatt

Function

NR:

description
monocarboxylate transporter 12-B-like

GO: NA

KEGG:

id description
K11810 SLC16A12; MFS transporter, MCT family, solute carrier family 16 (monocarboxylic acid transporters), member 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564804.2 True 1585 mRNA 0.53 5 13659381 13667159

Neighbor

gene id symbol gene type direction distance location
ch25h LOC106579045 coding downstream 112870 13545178 ~ 13546511 (-)
LOC110491380 acta2 coding downstream 142710 13508655 ~ 13516671 (-)
ankrd22 ankrd22 coding downstream 167406 13482201 ~ 13491975 (-)
rnls rnls coding downstream 194986 13421146 ~ 13464395 (-)
LOC110491375 LOC106578956 coding downstream 303352 13345186 ~ 13356029 (-)
LOC110491396 LOC106578966 coding upstream 19700 13686859 ~ 13698803 (-)
LOC110491398 LOC106578967 coding upstream 74034 13741193 ~ 13753444 (-)
LOC110492837 LOC106578968 coding upstream 90962 13758121 ~ 13764921 (-)
LOC110491403 LOC106578980 coding upstream 264863 13932022 ~ 13936223 (-)
LOC110492880 LOC106579038 coding upstream 316391 13983550 ~ 13985369 (-)
G1343460 NA non-coding downstream 13016 13623964 ~ 13646365 (-)
G1343448 NA non-coding downstream 41649 13580031 ~ 13617732 (-)
G1343456 NA non-coding downstream 50428 13600786 ~ 13608953 (-)
G1343455 NA non-coding downstream 51788 13599314 ~ 13607593 (-)
G1343445 NA non-coding downstream 68085 13576846 ~ 13591296 (-)
G1343085 NA non-coding upstream 69825 13736984 ~ 13739703 (-)
G1343549 NA non-coding upstream 133545 13800704 ~ 13802846 (-)
G1343574 NA non-coding upstream 167695 13834854 ~ 13848085 (-)
G1343637 NA non-coding upstream 286166 13953325 ~ 13953548 (-)
G1343639 NA non-coding upstream 288557 13955716 ~ 13955937 (-)
G1343452 LOC106578962 other downstream 25203 13585136 ~ 13634178 (-)
G1343278 NA other downstream 407713 13251434 ~ 13251668 (-)
G1342941 NA other downstream 959213 12698986 ~ 12700168 (-)
G1341480 LOC106578921 other downstream 1639867 11946567 ~ 12097768 (-)
LOC110491342 LOC106578908 other downstream 2002818 11652429 ~ 11667766 (-)
G1345259 NA other upstream 1584218 15251377 ~ 15253570 (-)
G1345561 NA other upstream 2031826 15698985 ~ 15699263 (-)
G1347067 NA other upstream 3257363 16924522 ~ 16929432 (-)
G1347343 NA other upstream 3528171 17195330 ~ 17196129 (-)
LOC110491477 psme3 other upstream 3722226 17389099 ~ 17394265 (-)

Expression


Co-expression Network