LOC110491407 (LOC106578978)


Basic Information

Item Value
gene id LOC110491407
gene name LOC106578978
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 14105705 ~ 14110255 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564830.2
AAAGTAATCATTGCATGTTAATACAGTGGCCACCAAGGTTACATATTAAACCGGTGTGACACTCACTCTCAGGCAGAGAAGGGTGTAAAGCTACCTCTAAGGCATGTTCACCTGTTGCATCTTACAATGGGGGATTTGACGGACAGTAATAGCATAGATGACCGAGTTCTATCGGTCGTTCCTCGTAGAGAAGAGGACATCAAAGTTGTATTTCACAAAGTTGGCGATGACGACGACGATGAACACACAACTGAGAGAATAAATTTACAAAGTAACAGTCATGATGAGAGGAGCAATGATAAGGACGCAAGGACTAGAACAATGGAAAGCAGCGCGATGCAAAGATTCTGTCCTTTCATATATTGTAGAATTGGCGGCGGCGGGGATCACATCTCAACGGACGCTGGAGACACAGTTGCTAAAGaGAAAAAGCATTGTCCAGGACTGGGCCTGTTCTATGGCCTGCTGGCAACAGTGTTCTTCTCCGTTATAGCTCTTCTGGTGAAGACAATCGATGGAGTCCATGCTGTAGAAATCAGTGCCATTCGCTGCTTCTTCCAGATGCTGTTTGTTATGCCTATGCTTATCTATCACAAGACTGGCTTCCTTGGACCAAGAGACAAGCGGATCTATTTGGTGATGAGAGGATTCTTGGGTTCTAACGCCATGATCCTATTGTTCTATGCAGTTCAGCAGATGCCCCTGGCTGATGCAACAGTCATCATGTTCAGCAACCCAGTGTTCACTGCCTTGCTAGCCTGGATCTTCCTCAAAGAGAAATGCACAATCTGGGACTGTGTCTTCACTGTGTTCACACTGGCTGGTGTCATAATGATAGCCAGGCCTCCCTTCATATTTGGTGCTCGTATAGAGGAAATAGAGGGAGACTACACCAATCATCTCAAGGGGACTATTGCAGCCTTTGGTGGAGCGATGGGGGCAGCTTGCACTTTCGTAATACTCAGGAAAATGGGCAAAAGTGTCCACTACTATCTGTCCGTGTGGTACTATGCTGTCATTGGTTTCATTGAGTGTTTCATCACTTTGTTTATACTTGGTGAATGGACCATTCCATTCTGTGGGAGAGACAGGTGGATCCTTATGCTGATAGCGATCCTGGGCATCGCTGGCCAAACGTTCCTCACCAAAGCACTACAGATCGAGAAGGCCGGCCCTGTGGCCTTGATGAGGACCGTCGACGTGGTCCTAGCTTTTATTTTCCAGTTCATTTTTTTCAATCGAAAGCCCACCATGTGGAGTCTCGGTGGGGCATGTTGTGTGGTCGTCAGTACTTGTGGTGTGGCGCTAAGGAAGTGGTACAGCAACACACACCCAAGAAAGAGCTAAGAACCACACAAATAAATTACTTTTTTGCAAGGAATAAATTCAAGTTTATCAGTTAATATGTTAGTGTTCAGCAGATGAGTGaaaaccccccccaaaaacacAGAAAACCAAAGAAGCAACATTACATCCAAATGTTACTGTAAGGGTTGAACACAAAACTGGACACATTTCAGTATTTACATCTACATACTGTACTTAGAAAATAGGGTTTCTCAAAGGTGCTTTGGTAAGGGTGATATGTCAAACCATAATGACTCAAAGAACACTTAAATGTTTCTTTGCATTTCAGAAAAGGGTTCTTTCATCTTTTAGTGATAATTAAAATGTAGCGGTGGCAGCTCATTCAAATTTTTTGGAGCGTGGTTTGCACACAGGTGTTTTTGTGCAGTTGTGAGTGAGTGTCATTCCAGTTTATCtagtatgttgtgttgtgtcatTAATAATGACTCAGGCCAGTAATGGTCTCTTGTTAAGAAGACTCACATAAAGCCTTGTGTCAATTGAGAACTGTTGACTAAATCTCAATTCTCTCCTCAGAGAACCCCAGCCGTTCCAGAGCTAGCACATCTGATTAAACTTGTGAATTAACATAGTAATAACACCATCATTTTAACAATATAATATGGCTAACCCCATAAGAAGGGTGttctatatagcaccaaaaaAGGTTATAACCTTTTTTTTATTGGATCTTTGTATAACCTTAAAAAATGGTTCTATTTAGCACCAAAAATGGTTCCACTGTGGTTACAAGCCAAATAACACTGGTAGTGGCACTatatagaattttttttttttctgtactgAGTTCATCAGTACCACGTCAGTAcagcataaaataaaataagaatatgttcttaactgacttgcctagttaaataaaggtaatatatataaatatatataataatatatataattcatttttttaatcAGCAACATCTTATTGTATTTTAAATGGGCTGATCTCCTTTATTTTAATATACTGCTGGTCAGAATCGGTTTGTTGTGGACATTTCGAATGTGATAGGGTGATTTGTTTTCTTTTCCCCACGCAAATATGTTTAAAAGATTGCTTTGTGCAATGTGTCACTGAGATTGCTGGATAGCAATAATATTCTGTTGACCCAACGGGTAAGCAGCATAATCGGACGACTTTATGCATAACTTACGTTTctcctgcctagttaaatagtaGAATTTGATGGAAACGTGATATTTACAGTACAAATAGCTTTATGACAGTATACCACAGAAAACAACTCGTTGCCTTCCATATAAAACGTTTACTAGTAATTTAGAACTAAGCACTTGAGTTTGCACATTTTTGTTACATGCAGTATCAGTTATGATGCTTCGTATAAGTTGTATACTCCTAGTTCTCTCAGGGTTTCTATGCTGTTTTATAGTATTTCTTAATGTATCAATAGAAATAAATAGATATTTATGCTTTATCAAAAGCACTTTCTCCGACTGATTGGAAGTTTTTGACTTGAATTTGTTCTTGTTTATCAAATATATTGATGTTGTGAAAATGATTCTTAACTTTTCCGTGTTCAATCATTTTCAGGTAGGTTTACATAAATTGTTCATAACGAAAGTATGAACCATTTAAATGAACCATTTCATTCTTACATTTAATTCAGAGCCTGTTTATATGACATCATACATTGTTTCTAGAACTTCCAAGTGACTTATTTTACAATATgttgtgttcaattaaggtggaCACAGTATATCTGAACCTTTGTCTAGTTCATGTTTGATTTTATTTAACTGATACAGATTTGATTGATGAGACTGTAATGTTGGATGCACTCGCAAAAAGAAGAGCATCAAATATTTGAGTTATTACCTTCATGCCTTACTAAATCCTTTCTCATCTATGTAATTATTATATTACAGTATTTATATGACACTTTGAGATTTTATATGAGAAATAAGGATTATTCTAAATGTTGTATATTtgtcatattttttatttgaaaataaattgcaTATACATTTCACA

Function

NR:

description
solute carrier family 35 member G1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564830.2 True 3358 mRNA 0.38 3 14105705 14110255

Neighbor

gene id symbol gene type direction distance location
LOC110491405 LOC106578971 coding downstream 5018 14016935 ~ 14100687 (-)
trnaa-ugc-126 NA coding downstream 48649 14056983 ~ 14057056 (-)
LOC110492880 LOC106579038 coding downstream 120336 13983550 ~ 13985369 (-)
LOC110491403 LOC106578980 coding downstream 169482 13932022 ~ 13936223 (-)
LOC110492837 LOC106578968 coding downstream 340784 13758121 ~ 13764921 (-)
LOC110491406 lgi1 coding upstream 322 14110577 ~ 14118040 (-)
LOC110491410 LOC106578975 coding upstream 37288 14147543 ~ 14160863 (-)
LOC110491408 LOC106578977 coding upstream 57874 14168129 ~ 14178170 (-)
dnajc9 dnajc9 coding upstream 103358 14213613 ~ 14217275 (-)
LOC118939470 NA coding upstream 336942 14447197 ~ 14455717 (-)
G1343885 NA non-coding downstream 31046 14043703 ~ 14074659 (-)
G1343668 NA non-coding downstream 124365 13981086 ~ 13981340 (-)
G1343650 NA non-coding downstream 141661 13963762 ~ 13964044 (-)
G1343645 NA non-coding downstream 144905 13960530 ~ 13960800 (-)
G1343643 NA non-coding downstream 147883 13957599 ~ 13957822 (-)
G1343936 NA non-coding upstream 26365 14136620 ~ 14139917 (-)
G1343938 NA non-coding upstream 30485 14140740 ~ 14141217 (-)
G1343937 NA non-coding upstream 31418 14141673 ~ 14142760 (-)
G1343939 NA non-coding upstream 32803 14143058 ~ 14143601 (-)
G1343940 NA non-coding upstream 34684 14144939 ~ 14145656 (-)
G1343452 LOC106578962 other downstream 471527 13585136 ~ 13634178 (-)
G1343278 NA other downstream 854037 13251434 ~ 13251668 (-)
G1342941 NA other downstream 1405537 12698986 ~ 12700168 (-)
G1341480 LOC106578921 other downstream 2086191 11946567 ~ 12097768 (-)
LOC110491342 LOC106578908 other downstream 2449142 11652429 ~ 11667766 (-)
G1345259 NA other upstream 1141122 15251377 ~ 15253570 (-)
G1345561 NA other upstream 1588730 15698985 ~ 15699263 (-)
G1347067 NA other upstream 2814267 16924522 ~ 16929432 (-)
G1347343 NA other upstream 3085075 17195330 ~ 17196129 (-)
LOC110491477 psme3 other upstream 3279130 17389099 ~ 17394265 (-)

Expression


Co-expression Network