LOC110491406 (lgi1)


Basic Information

Item Value
gene id LOC110491406
gene name lgi1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 14110577 ~ 14118040 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946251.1
TACTActatcagcagcagcagcaatagcaACAATATCAATGAGCAGGTGCTCTTCCAGCTTCCATAGACTCTTCTAATGAATAGGCCGTTCCGCATTAACCATTCAAGGATTTCGTGCGCGCATAAATAATAGTCTGCGTCTCTCAAAAAATAAGCGCCGCTCTCAGCGCGATCTCTCCAGGGACTTGAGGCTTTCATCTTTTCTTATCCGATCGAGCCAAATAGATACGTATTCAGaccttcacaataaaacatatagaGCTAGCCTAGTTCTTACAAATAAGTAACACTTTAAAAACTGTGTAGCCTACATTGGATCTATTTTTACTTTTGGAATTACAACGTATTTTGGAGGATTTTAATCTGTCCAAGGATCGGAGACCTTTGTTTTATCTTCCTTCTCCTGCATTTGTAAATACTGCGCCTTGCAGAACGAATCTTTTGGATTAGTGCCTGGTCATTGAGATACAAGCTGCATTCATCACTGCAAATTCATCGAAGCAAATACAGACATTCAAGATTTGGCATTGAAACATTTTAATTTTTGATTTTTCCTTGAGGTTCATGTTCAGAAATATTCGACGGACTGGTTGTCACCAGAGAGCAACACGAGGATGGGATATGCAAGCAAAACCCTGAAAGGATGCATGGTGTTGATTTGGATCGCCACGGTCCTGCTTTTATCGGAGACCAGAAGAGTAAAGCAACCTAGATGCCCCGCATCTTGTACGTGCACCAAAGATAATGCACTGTGTGAAAATATAAGATCGGTCCCTCACAGCTTTCCACCTGATGTCGTTTCATTATCTTTTGTCAAGTCTGGATTCACCGAAATCACTGGAGGAAGCTTCTTACACACGCCTGCTCTACAGCTTCTTCTATTCACTGCCAACACGTTTGACTCAATTGATGAGGATGCGTTCCTGGGACTACCGCATCTGGAGTACCTGTTTATCGAAAACAACAAAATTGCTTCAATATCACCATATGCATTCCGGAGCCTAAAAGCACTGATACACCTGAGCCTGGCCTATAATAACCTTGAGACATTACCCAAAGATGTTTTCAAGGGCATGGATGCTTTGGCTAAAGTAGATCTGAGAGGGAACCACCTGGAATGTGACTGCAAACTAAAGTGGCTAGTGGAGTGGATGCGTACCACCAATGCGACAGTTGACCAGATCTCCTGCAGTGGGCCCCCGCTTTTCCAAGGGAAACTGATCAATGACCTTGTGCCCGGGTCATTTGACTGCATAACAGCAGAGTTTGCCTCTTATCAGCCCCTGACATTTGAATCCATTTCGGTGGAGTCCTTTACCTTTGGCATGGACCAGTTTGTTGTGTTTGCCCAGCCCTTCACTGGTACATGCAGCTTCCTGGAATGGGATCACGTTGAAATGGTTTTCAGAACCTATGACAGCGTTCAAAGTACATCCACTGTGGTATGCAAACCCATGGTGATTGATAATCAGCTGTTCATCATTGTAGCCCAGCTCTTTGGTGGCTCTCACATTTACAAGCGGGACATCTCTGCCaacaaattcataaaaatccaggACATTGACATCCTGAAAATCAGGAAACCTAATGACATTGAGACTTTCCTTATAGATGGTGAGTCCTTCTTCGTGATCGCAGACAGCTCCAAGGCCGGTTCTACCACAGTGTACAAATGGAATGGCAATGGGTTCTACTCTCACCAGTCCCTCCATGCCTGGTACCGTGACACAGACGTGGAGTACCTGGAGATCTCTGGTAAGCCCCATCTGATCCTAGCCAGCAGTTCCCAGAGGCCTGTTGTCTACCAGTGGAGCAAGAGCCTGAAGAAGTTTGACCGGCGCACTGATATCCCCGAAATGGAGGACGTGTTTGCGGTCAAGCACTTTAAGGTGAAGAGTGAACTTTTCATCTGCCTGACGCGTTTCATCGGGGACTCCAAGGTGATGAGGTGGGACGGTTCCATGTTCAAAGAGGTACAGACAATGCCTTCGCGAGGCTCCATGGTGTTCCAGCCCATCTCCATCGGCAACTGGCAGTATGCCATCCTCGGCAGCGACTACTCCCTGACGCAGGTCTATCAGTGGGACTTGAAGAGGGGCCAATTTGTTTACTTCCAGGATCTAAACATCCAGGCACCAAGGGCATTCTCTCTGGTGTCCATTGACAACAGAGAGTTTCTGCTGGCCTCCAGCTTCAAAGGGAAAACTCAGATATACGAGCACCTAATGATTGACCTGAGTAATAATTAATTAATGAAAACAATTAAGGAGTGTGCAGTTGACAAGTGCAGTAGCACTGAACACTGTGGAGAGGATGACTATACTGCACCGCTATTTGCATGATATAGCCCACTAATAAGAAAGAATTCCTGATGAATGCCTTGCTAGAAACATCTACTGTGTCCCTCTCTTTCACAGCACTCTTTCTTCTTTTTTTCCTCGTAGACAAAGCAATTGTTGACATACAGCAGCTAAGCCCTACACTACGGTAACCACGGTAATTCCTGTGCTATAAGATAAACTTAAGAGGTAAAATAAAGTAAACAAAAATGTTGCTTGTAAAGTACTCATTAACATTTAATTGACAATTTCCAGAATAAAATGTTTACGTTTTTACAATGATGAGTAAATTAATACAGCGTTTTGTATGTAGAGGGGACCACTCCAATCATGTTATATCTTTCATATGGAGCTATAGTTTTAGATTTTGAAATTACATTTTTAATTGAACCTAATCTAGGCCTAAACACATGTATTCTAATCTGTAGTAAGAGTGTGTTTTGTTTTAAATGTTGCTGTATTTTATGTATAGTAGACTAGTAATAAACCAATTTCATAAAAGCATAAA
>XM_036946252.1
GGATGGCTGAACGAACAAAAGGTAGGTTCATGTTCAGAAATATTCGACGGACTGGTTGTCACCAGAGAGCAACACGAGGATGGGATATGCAAGCAAAACCCTGAAAGGATGCATGGTGTTGATTTGGATCGCCACGGTCCTGCTTTTATCGGAGACCAGAAGAGTAAAGCAACCTAGATGCCCCGCATCTTGTACGTGCACCAAAGATAATGCACTGTGTGAAAATATAAGATCGGTCCCTCACAGCTTTCCACCTGATGTCGTTTCATTATCTTTTGTCAAGTCTGGATTCACCGAAATCACTGGAGGAAGCTTCTTACACACGCCTGCTCTACAGCTTCTTCTATTCACTGCCAACACGTTTGACTCAATTGATGAGGATGCGTTCCTGGGACTACCGCATCTGGAGTACCTGTTTATCGAAAACAACAAAATTGCTTCAATATCACCATATGCATTCCGGAGCCTAAAAGCACTGATACACCTGAGCCTGGCCTATAATAACCTTGAGACATTACCCAAAGATGTTTTCAAGGGCATGGATGCTTTGGCTAAAGTAGATCTGAGAGGGAACCACCTGGAATGTGACTGCAAACTAAAGTGGCTAGTGGAGTGGATGCGTACCACCAATGCGACAGTTGACCAGATCTCCTGCAGTGGGCCCCCGCTTTTCCAAGGGAAACTGATCAATGACCTTGTGCCCGGGTCATTTGACTGCATAACAGCAGAGTTTGCCTCTTATCAGCCCCTGACATTTGAATCCATTTCGGTGGAGTCCTTTACCTTTGGCATGGACCAGTTTGTTGTGTTTGCCCAGCCCTTCACTGGTACATGCAGCTTCCTGGAATGGGATCACGTTGAAATGGTTTTCAGAACCTATGACAGCGTTCAAAGTACATCCACTGTGGTATGCAAACCCATGGTGATTGATAATCAGCTGTTCATCATTGTAGCCCAGCTCTTTGGTGGCTCTCACATTTACAAGCGGGACATCTCTGCCaacaaattcataaaaatccaggACATTGACATCCTGAAAATCAGGAAACCTAATGACATTGAGACTTTCCTTATAGATGGTGAGTCCTTCTTCGTGATCGCAGACAGCTCCAAGGCCGGTTCTACCACAGTGTACAAATGGAATGGCAATGGGTTCTACTCTCACCAGTCCCTCCATGCCTGGTACCGTGACACAGACGTGGAGTACCTGGAGATCTCTGGTAAGCCCCATCTGATCCTAGCCAGCAGTTCCCAGAGGCCTGTTGTCTACCAGTGGAGCAAGAGCCTGAAGAAGTTTGACCGGCGCACTGATATCCCCGAAATGGAGGACGTGTTTGCGGTCAAGCACTTTAAGGTGAAGAGTGAACTTTTCATCTGCCTGACGCGTTTCATCGGGGACTCCAAGGTGATGAGGTGGGACGGTTCCATGTTCAAAGAGGTACAGACAATGCCTTCGCGAGGCTCCATGGTGTTCCAGCCCATCTCCATCGGCAACTGGCAGTATGCCATCCTCGGCAGCGACTACTCCCTGACGCAGGTCTATCAGTGGGACTTGAAGAGGGGCCAATTTGTTTACTTCCAGGATCTAAACATCCAGGCACCAAGGGCATTCTCTCTGGTGTCCATTGACAACAGAGAGTTTCTGCTGGCCTCCAGCTTCAAAGGGAAAACTCAGATATACGAGCACCTAATGATTGACCTGAGTAATAATTAATTAATGAAAACAATTAAGGAGTGTGCAGTTGACAAGTGCAGTAGCACTGAACACTGTGGAGAGGATGACTATACTGCACCGCTATTTGCATGATATAGCCCACTAATAAGAAAGAATTCCTGATGAATGCCTTGCTAGAAACATCTACTGTGTCCCTCTCTTTCACAGCACTCTTTCTTCTTTTTTTCCTCGTAGACAAAGCAATTGTTGACATACAGCAGCTAAGCCCTACACTACGGTAACCACGGTAATTCCTGTGCTATAAGATAAACTTAAGAGGTAAAATAAAGTAAACAAAAATGTTGCTTGTAAAGTACTCATTAACATTTAATTGACAATTTCCAGAATAAAATGTTTACGTTTTTACAATGATGAGTAAATTAATACAGCGTTTTGTATGTAGAGGGGACCACTCCAATCATGTTATATCTTTCATATGGAGCTATAGTTTTAGATTTTGAAATTACATTTTTAATTGAACCTAATCTAGGCCTAAACACATGTATTCTAATCTGTAGTAAGAGTGTGTTTTGTTTTAAATGTTGCTGTATTTTATGTATAGTAGACTAGTAATAAACCAATTTCATAAAAGCATAAA
>XM_021564829.2
AGAGAACGTTTATGGTTGGAGAGTGTAGAGATTCTAATGGCgtatttttgtaggcactaattCCGCCGTGGTTTGTTGGACAAAGGGTATGGGGAAAATGAATGTCGTTTTTGGATAAAATTCGAAAATAAGGGATGGCTGAACGAACAAAAGGTTCATGTTCAGAAATATTCGACGGACTGGTTGTCACCAGAGAGCAACACGAGGATGGGATATGCAAGCAAAACCCTGAAAGGATGCATGGTGTTGATTTGGATCGCCACGGTCCTGCTTTTATCGGAGACCAGAAGAGTAAAGCAACCTAGATGCCCCGCATCTTGTACGTGCACCAAAGATAATGCACTGTGTGAAAATATAAGATCGGTCCCTCACAGCTTTCCACCTGATGTCGTTTCATTATCTTTTGTCAAGTCTGGATTCACCGAAATCACTGGAGGAAGCTTCTTACACACGCCTGCTCTACAGCTTCTTCTATTCACTGCCAACACGTTTGACTCAATTGATGAGGATGCGTTCCTGGGACTACCGCATCTGGAGTACCTGTTTATCGAAAACAACAAAATTGCTTCAATATCACCATATGCATTCCGGAGCCTAAAAGCACTGATACACCTGAGCCTGGCCTATAATAACCTTGAGACATTACCCAAAGATGTTTTCAAGGGCATGGATGCTTTGGCTAAAGTAGATCTGAGAGGGAACCACCTGGAATGTGACTGCAAACTAAAGTGGCTAGTGGAGTGGATGCGTACCACCAATGCGACAGTTGACCAGATCTCCTGCAGTGGGCCCCCGCTTTTCCAAGGGAAACTGATCAATGACCTTGTGCCCGGGTCATTTGACTGCATAACAGCAGAGTTTGCCTCTTATCAGCCCCTGACATTTGAATCCATTTCGGTGGAGTCCTTTACCTTTGGCATGGACCAGTTTGTTGTGTTTGCCCAGCCCTTCACTGGTACATGCAGCTTCCTGGAATGGGATCACGTTGAAATGGTTTTCAGAACCTATGACAGCGTTCAAAGTACATCCACTGTGGTATGCAAACCCATGGTGATTGATAATCAGCTGTTCATCATTGTAGCCCAGCTCTTTGGTGGCTCTCACATTTACAAGCGGGACATCTCTGCCaacaaattcataaaaatccaggACATTGACATCCTGAAAATCAGGAAACCTAATGACATTGAGACTTTCCTTATAGATGGTGAGTCCTTCTTCGTGATCGCAGACAGCTCCAAGGCCGGTTCTACCACAGTGTACAAATGGAATGGCAATGGGTTCTACTCTCACCAGTCCCTCCATGCCTGGTACCGTGACACAGACGTGGAGTACCTGGAGATCTCTGGTAAGCCCCATCTGATCCTAGCCAGCAGTTCCCAGAGGCCTGTTGTCTACCAGTGGAGCAAGAGCCTGAAGAAGTTTGACCGGCGCACTGATATCCCCGAAATGGAGGACGTGTTTGCGGTCAAGCACTTTAAGGTGAAGAGTGAACTTTTCATCTGCCTGACGCGTTTCATCGGGGACTCCAAGGTGATGAGGTGGGACGGTTCCATGTTCAAAGAGGTACAGACAATGCCTTCGCGAGGCTCCATGGTGTTCCAGCCCATCTCCATCGGCAACTGGCAGTATGCCATCCTCGGCAGCGACTACTCCCTGACGCAGGTCTATCAGTGGGACTTGAAGAGGGGCCAATTTGTTTACTTCCAGGATCTAAACATCCAGGCACCAAGGGCATTCTCTCTGGTGTCCATTGACAACAGAGAGTTTCTGCTGGCCTCCAGCTTCAAAGGGAAAACTCAGATATACGAGCACCTAATGATTGACCTGAGTAATAATTAATTAATGAAAACAATTAAGGAGTGTGCAGTTGACAAGTGCAGTAGCACTGAACACTGTGGAGAGGATGACTATACTGCACCGCTATTTGCATGATATAGCCCACTAATAAGAAAGAATTCCTGATGAATGCCTTGCTAGAAACATCTACTGTGTCCCTCTCTTTCACAGCACTCTTTCTTCTTTTTTTCCTCGTAGACAAAGCAATTGTTGACATACAGCAGCTAAGCCCTACACTACGGTAACCACGGTAATTCCTGTGCTATAAGATAAACTTAAGAGGTAAAATAAAGTAAACAAAAATGTTGCTTGTAAAGTACTCATTAACATTTAATTGACAATTTCCAGAATAAAATGTTTACGTTTTTACAATGATGAGTAAATTAATACAGCGTTTTGTATGTAGAGGGGACCACTCCAATCATGTTATATCTTTCATATGGAGCTATAGTTTTAGATTTTGAAATTACATTTTTAATTGAACCTAATCTAGGCCTAAACACATGTATTCTAATCTGTAGTAAGAGTGTGTTTTGTTTTAAATGTTGCTGTATTTTATGTATAGTAGACTAGTAATAAACCAATTTCATAAAAGCATAAA

Function

symbol description
lgi1 Enables signaling receptor binding activity. Involved in axon guidance and positive regulation of cell growth. Located in extracellular space. Implicated in familial temporal lobe epilepsy 1.

NR:

description
leucine-rich glioma-inactivated protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946251.1 False 2847 mRNA 0.43 8 14110577 14116254
XM_036946252.1 False 2312 mRNA 0.44 9 14110577 14117646
XM_021564829.2 True 2440 mRNA 0.44 10 14110577 14118040
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Neighbor

gene id symbol gene type direction distance location
LOC110491407 LOC106578978 coding downstream 322 14105705 ~ 14110255 (-)
LOC110491405 LOC106578971 coding downstream 9890 14016935 ~ 14100687 (-)
trnaa-ugc-126 NA coding downstream 53521 14056983 ~ 14057056 (-)
LOC110492880 LOC106579038 coding downstream 125208 13983550 ~ 13985369 (-)
LOC110491403 LOC106578980 coding downstream 174354 13932022 ~ 13936223 (-)
LOC110491410 LOC106578975 coding upstream 29503 14147543 ~ 14160863 (-)
LOC110491408 LOC106578977 coding upstream 50089 14168129 ~ 14178170 (-)
dnajc9 dnajc9 coding upstream 95573 14213613 ~ 14217275 (-)
LOC118939470 NA coding upstream 329157 14447197 ~ 14455717 (-)
grid1b LOC106578986 coding upstream 399279 14517319 ~ 14907970 (-)
G1343885 NA non-coding downstream 35918 14043703 ~ 14074659 (-)
G1343668 NA non-coding downstream 129237 13981086 ~ 13981340 (-)
G1343650 NA non-coding downstream 146533 13963762 ~ 13964044 (-)
G1343645 NA non-coding downstream 149777 13960530 ~ 13960800 (-)
G1343643 NA non-coding downstream 152755 13957599 ~ 13957822 (-)
G1343936 NA non-coding upstream 18580 14136620 ~ 14139917 (-)
G1343938 NA non-coding upstream 22700 14140740 ~ 14141217 (-)
G1343937 NA non-coding upstream 23633 14141673 ~ 14142760 (-)
G1343939 NA non-coding upstream 25018 14143058 ~ 14143601 (-)
G1343940 NA non-coding upstream 26899 14144939 ~ 14145656 (-)
G1343452 LOC106578962 other downstream 476399 13585136 ~ 13634178 (-)
G1343278 NA other downstream 858909 13251434 ~ 13251668 (-)
G1342941 NA other downstream 1410409 12698986 ~ 12700168 (-)
G1341480 LOC106578921 other downstream 2091063 11946567 ~ 12097768 (-)
LOC110491342 LOC106578908 other downstream 2454014 11652429 ~ 11667766 (-)
G1345259 NA other upstream 1133337 15251377 ~ 15253570 (-)
G1345561 NA other upstream 1580945 15698985 ~ 15699263 (-)
G1347067 NA other upstream 2806482 16924522 ~ 16929432 (-)
G1347343 NA other upstream 3077290 17195330 ~ 17196129 (-)
LOC110491477 psme3 other upstream 3271345 17389099 ~ 17394265 (-)

Expression

LOC110491406(lgi1) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 75.
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LOC110491406(lgi1) Expression in each Bioproject

Bar chart with 21 bars.
LOC110491406(lgi1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
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Co-expression Network