LOC110491410 (LOC106578975)


Basic Information

Item Value
gene id LOC110491410
gene name LOC106578975
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 14147543 ~ 14160863 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946253.1
AGCAGAGTAAAGGACGTTTTTGTGATTTGTCCAGCACCACAGCAGAGAATGCAGGTCGGTGCAAACGGAGGCCACTAACTACCCACCGTTTACACCTTGCGACTTTTCCGGGTGATGCGTCTGTGAGAGAAGGGAGGCAAACGAGAACAATTCAAAATGGGAGACAAGGATAGTGTGGAGAAGTACCTGGAGAACAATCCCCAGTTCGCCAAAGAGTACTTTGACAAAAAGTTGAGCCCCGAAGTGATCGCGACAACGTTCGCAGAAAATCTCAAAGATCAATCTTCCTTCAAAGATGTCTCCCAAATTCAGGAGGCCAACATCATCTATGACCTGGTCAAAGAAATGCAATCGCAAATCGTTATGGAAAAGGTATTGCACAAGGTCCTGCAGAGGGTTTGCTTGATTTTGAACGCAGACCGGTGCAGTTACTTTGGTCTTCGAGCTAGAAATGGAATACCTGAGCTTACAACGACGCTCTTCAATGTCACCCCTACCTCCAAATACGAAGAAAACCTTGTCAACCCCGCTAATGAGATTGTGTTTCCAATCGATATGGGTGTAGTTGGATACACAGCGCACTCCAAAAAGATGCACAACATTCCGGATGTTACAAAGAATAACCGCTTCAGTGACTTTGTGGACAAGCAGACAGGATACAAAACCAAAAACATGCTCTCATTCCCCATGATGGCTGATAAGGAATGCCTTGGTGTTGCCATGGCACTAAACAAAATTGGGGCTGAAGAATTCTCAAAAGCCGACGAGGAACTCTGGAACAAGTACTTGGTCTTTGCCCAAGTCATTGCCACGCAGCATCACACTGCATACATGTTCAACGTGGAATCCAGGAAAGGTCAGGTCCTTCTGTGGTCTGCCAGCAAAGTATTTGAAGAGTTGACAGACATTGAGAGACAGTTCCACAAAGCTCTGTACACTGTGAGAATCTACCTCAATTGTGAAAGATACTCCGTGGGCCTCTTGGACATGACCAAAGAGAAGGAGTTCTACGATGAGTGGCCAGTGAAGCTGGGAGACGTACCACCGTACAGCGGACCAAAGACCCCCGACGGAAGAGAAGTCATCTTCTACAAGATCATCGACTATCTCTTAGAAGGACCCAAAGAGGAAATCAAAGTCATACCGGGTCCTCCTATTGACCACTGGGCCCTGGTGAGTGGGCTCCCCACTTACGTGTCAGAGAACGGCTATATTTGTAACATGATGAATGTTGCCGCTGATGAGTACTTCACGTTCCAGAAAGAGGCTGTGGATGAGTCAGGTTTCATCATCAAGAATGTCTTGTCCCTTCCCATCGTCAACAAAAAGGAAGAAATTGTGGGTATTGCCACTTTCTTCAACAGGAAAGATGGTAAACCATTCGATGAGCACGACGAACAGATCACTGAGGCCCTCACCCAGTTCCTGGGATGGTCGGTGTTGAACTGCGACACATACGACAGACTGAACAGGATGGAGTGGAGAAAGGACATCGCCCAGGAGATGCTCATGTGTCAGACTAGATGCACCAACACAGAAATGCAGAGTATCCTGAACACAAAGGAAAAGTTTGATGCGGATCCAGAGGACTGTGACCAGAAAGAGATGTACAAACTCTTGAGATCAAATTGTCCTGTGGCCATAGACGTCGACCTGCTACTGTTCTCCTTCAGTGACTTCCCTGTGACTGAGCACGGCCTCATCATGTGCGGGATTCGCTGCTTCTTTGAGCTGAACGTGGTGGAGAAGTTCAAAGTGCCAGCAGAGACCCTCACGCGATGGATGTACACTGTCCGGAAAGGTTACCGTGACATCACCTACCACAACTGGAGACACGGCTTCAACGTGGGCCAGACCATGTTCTGTCTTCTACAGACTGGCAGGCTGAGGAAATATTACTCTGACCTGGATGCCTTTGCCATGGTGGCCGCTGCATTCTGCCACGATATTGACCACAGGGGGACCAACAACTTATACCAGACAAAGAGTGGATCGCCTTTAGCCAAACTACACGGCTCCTCCATCATGGAGAGGCACCATTTGGAGTATAGCAAGACGCTCATGGCTGAGGAGAGCCTGAACATCTTTGTGAATCTCCAGAAGCGTCAGTTTGAGACTGTACAGCACTTGTTTGACGTCTGCATCATTGCCACTGATCTGGCCTTGTACTTCAAAAAAAGAACAATGTTCCAGAACATTGTGAACGCCACTGAGCCAATGGAAACCGAGAAGGATAAAATCGATCATATTTCCAACAACCCAATCAGGAAGGAAATTATCATGGCCATGATGATGACAGGTTGTGACTTGTCTGCCATCACCAAACCATGGGATGTCCAGAGCAAGGTGGCTCTTATGGTCGCAGCTGAGTTCTGGGAGCAAGGTGACTTGGAAAGGACCGTTCTCGATCAGCAACCCATTCCCATGATGGACAGAAACTGTGCGGCGGAGTTACCCAAGATGCAGTGCGGTTTCATTCAGtttgtgtgtgcgttcgtgtACAAGGAATTCTCAAGGTTCCACGTAGAGATCACCCCCATGTTTGATGGGCTGAACATCAACCTAAAGAACTGGAAAGAGCTGGCCGACATCCACGCCGCCAAGATGGCGGCCATCGAGGAAGAGAAAAAGAAGCTTGAGGCACCACCAGCAGATGAGGTCCCAGAGGGGGGAAAGTCCAAGACCTGCACCATTGCCTAACCCCCTGGAGTGTGCCTCTGCCCTTGCCGTGTGGCGGAGGATCCCTAGGCGCAGCAGGCAGTCAGTGTGAAGTTGTATCCCTTTGTGGACTGACTCGATCGCTTCCCCTCATTCTCAGGACTTGATAAGCCAATCCTGATGGATCAACACAGATGTACCAGCAGTTGGAGCATTACCATATCTGGACAGCACAGTTAAAGTAGAGCATATCTTTCACAGATAACTAACTATAGGTACTACTTAATCAACAACTAACATCATCTATGTAATGAAACAAACATTACATCTTAACATCTTCCAAATGGCATATATTGTATTTAAATACTATTTATTGAGACACATTCTGCTCGGGGAAATAATTAGCTGTACATTTTTATCCATACTCTGATGGCCCATAAAGATATGAGGGTGAGAGTTCAGTGGACAAACTTTTATAACTGAGCTGTTTTATGAGAACAGGAATACTGCTAAATATCTTATATACACATCTCAAGATTTTTTTTTACGAACAAATATGAGTACAAATGATAACACAAActctgtagaaagagagagacagacactgctCCTTTAGAATGCTGTGCTGCAAGAGCACACACTTCTTCCCATAACTCAAGCTTAAAAGGTAAACTTGCTACTGTGTTTTAGCAAGTGACAATTGACTTTACCGAAGGTTAATATAGCAGCAATGCTGAAAACGTGCACACTCTTCTGAGCCTTGTGAAGGTATATTTGTGTTAATAtgctaaatatatatttttggattGTTTGTCAGATTTTCTACTTGATGTATTTTAAGAGTCTTTAGATCGTATGAACTGATGATCTGGTTAGAAGTCGCGTTTGAGCATCAGGTATCCATTGCAAACTGTGTACAATTTTAAACTGCACAACATTTTCCCAATAACTTGAAAATGTAATATACATATTACTTGCTATTTATACATATGTGTATCATATATTGAAATGCAGTAATCTTTCAAAAATATAGATTATGCTATTATGTATGTGCATTCTCCAAAGAAATGTAGTTCATCACATAggaaatgtatgtaaaatatgTACAAATTAAATCTACAATTTGCTTGTTACTAGGAGGCAAGCCTCGGAAATGTTCTATCAGGTTCGTGTGTCTTCAAGTACCTGACCATAAGATGATTTGATGGGATTGAGTTTGCTTGCCAGACAGCTTTTGAGATCTGCACAGCTTTAAACTTTAAATACCCTACTTACTGTAGATCAAGCAGGCTACCGAAGTCTTatcatatctactgtttgtgagGGCCATCATGTTTGTTTGATGGAGTACCAGCCTCCAATGTGGTCTCAGGCAGGCCAAAGTCCTTCTTTTCTTTGTTTGACCATTCGGGGACCTGTGTAAAATGTACTTATGCAACAGTGAGAAAGTTAATTGATGAACCCGATTGAATTGCAATGGGGTTCCCATAAAAAGAACTCCTTACGATTCCTGCCGAGACATCTCCTTTCGACCTACTGTAACAGGTGACTGAGGCGTCTGCGGAGGCAGTGGCTGTTGGCAGGAAACAATGCAGGCAAAGTTTGATTCTTTGCTAATGCAACGTGCCCTGTCAATCAAGAGCACTAATCCAATAAGAGTGGCTTTGACAGCCAACCTGCATCTTAAATGGCTTCTCTGAATCTTTGTTCCTAAAGCTGCTAGGCAGGGCAGGCCACTCGGATCAGGGCTTTACACTATGACAGCCATATGGGAAAGTGAGTTCATCTATCCTACACATACATTTAAAGGACCCCAAGATGCAGATCTACTAATTAAATTGAGTTATCCTTGAGAGAGATTAGAATTTGATGTCTGATCAAACTAATTCTACTGTATGTACGTGTCATAAGATGTAACGTAAAATAAAGGCATACATCAAAGTC

Function

NR:

description
cone cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha'-like

GO: NA

KEGG:

id description
K13757 PDE6C; cone cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha'

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946253.1 True 4602 mRNA 0.44 22 14147543 14160863

Neighbor

gene id symbol gene type direction distance location
LOC110491406 lgi1 coding downstream 29503 14110577 ~ 14118040 (-)
LOC110491407 LOC106578978 coding downstream 37288 14105705 ~ 14110255 (-)
LOC110491405 LOC106578971 coding downstream 46856 14016935 ~ 14100687 (-)
trnaa-ugc-126 NA coding downstream 90487 14056983 ~ 14057056 (-)
LOC110492880 LOC106579038 coding downstream 162174 13983550 ~ 13985369 (-)
LOC110491408 LOC106578977 coding upstream 7266 14168129 ~ 14178170 (-)
dnajc9 dnajc9 coding upstream 52750 14213613 ~ 14217275 (-)
LOC118939470 NA coding upstream 286334 14447197 ~ 14455717 (-)
grid1b LOC106578986 coding upstream 356456 14517319 ~ 14907970 (-)
LOC110491419 LOC106578987 coding upstream 834557 14995420 ~ 15041584 (-)
G1343942 NA non-coding downstream 1083 14146235 ~ 14146460 (-)
G1343941 NA non-coding downstream 1383 14145781 ~ 14146160 (-)
G1343940 NA non-coding downstream 1887 14144939 ~ 14145656 (-)
G1343939 NA non-coding downstream 3942 14143058 ~ 14143601 (-)
G1343937 NA non-coding downstream 4783 14141673 ~ 14142760 (-)
G1343913 NA non-coding upstream 5250 14166113 ~ 14167983 (-)
G1343997 NA non-coding upstream 102935 14263798 ~ 14320541 (-)
G1344106 NA non-coding upstream 248235 14409098 ~ 14409309 (-)
G1344123 NA non-coding upstream 260452 14421315 ~ 14421527 (-)
G1344148 NA non-coding upstream 274834 14435697 ~ 14436031 (-)
G1343452 LOC106578962 other downstream 513365 13585136 ~ 13634178 (-)
G1343278 NA other downstream 895875 13251434 ~ 13251668 (-)
G1342941 NA other downstream 1447375 12698986 ~ 12700168 (-)
G1341480 LOC106578921 other downstream 2128029 11946567 ~ 12097768 (-)
LOC110491342 LOC106578908 other downstream 2490980 11652429 ~ 11667766 (-)
G1345259 NA other upstream 1090514 15251377 ~ 15253570 (-)
G1345561 NA other upstream 1538122 15698985 ~ 15699263 (-)
G1347067 NA other upstream 2763659 16924522 ~ 16929432 (-)
G1347343 NA other upstream 3034467 17195330 ~ 17196129 (-)
LOC110491477 psme3 other upstream 3228522 17389099 ~ 17394265 (-)

Expression


Co-expression Network