LOC110491408 (LOC106578977)


Basic Information

Item Value
gene id LOC110491408
gene name LOC106578977
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 14168129 ~ 14178170 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564832.2
TTATAGATGCATCCATGTTTTATTAACAATAGAAAAGAGTTTGGGTTGAACGAACAAAAGTTTAGCTCTCTAAATAAGGACGGATTGCTGGCTAACTATAGCTGTGTTGTTAGGCAGACCAGCACCTACGGTACAGTAtttaacttagctagctaactagaatTAGCCACCAACTCAATAAAAATATAAAGCCAACAACCTAGCAGATTATCTGTATCTTCTTGTTTTTCTAGGTAACACGCCAGACATGGCATCAAAAAGCACCAAGGATATCATTGTCAACAAGTTAGGCTTTAAATCCAGTGGCTCAAAGCAAGCAGACATGGAAATGGACAGACTCAGGAAGGAAAATAATCACCTGAAGAAGATGATGgatgaaatatcaaaacgaacggCGAGGCCACCAGACTTGGACAAGAGCAAACTGCTAGAGAAAATTCTGTCTCTGGAGACATTAAGGGAGAGGAACACTCAGCAGCTGCTGGCAAAGGACAAGGAGGTGGAGACTCTGAGACAACAGCTGAGTTCCAGTGGGGGAGAGGTGGTGGCATCGCTCCAGTCTCAGCTGGaccaggggaggagagaggcagagcacAGAGAGAAACTCTTCCAGTCCCTCTCGGAGGAGACGGGGAACCTGAAGAACAACTTGGTGGCAGTGTCTGCAAGGTGTCAGGAACTGGAAGAACAGTTTCCTGATTTCCAGAATGGCAGGGTCCCCACCGGTGAGGTTGCCGTAGTTCAGGATCACCTGAGAGATGCTTTGGAGAAGAACCAACAGTGGATGGTTTATGACCAGCAGCGAGAGGCCTATGTCAAGGCAGTCCTGGCCAGAACCCTTGAGTTGGAGCAGCAACTAAATCAAGCCAACCAAGCtctccaacaacaacacaaagaaggCGATTCAGCCGCACCTGAGAAGTCTTCCCCCCAGCTGCAGGAGTACTACGACAAGCTTCTGCTGCAGGCCAAGCGGGACGTGGAGGCCCAGAAGGAGGCTGCTGCGCGGGCCCAGGGGAGGTACGAGGAGCGCTGCCGGGAGGTGGCCGAGGCCCAAGAACAGCTCCAGGCCGAGCGCCTCAGCAGGAGACACAGAGTCAGCGAGGAGAGGAAGTGCTTGGCTGACAGGATGAGGTCCGAGCGGGACAGCATGGACGCCAGGTTGGAAGACGAGAGGAAGAGGTCTGCTGAGCTTCTGCTGCAGGTGAATCTACTCCAGAAATCTCAGTTAAATCAAaatgaggagcagaggagagttgCTGTACTGGAACAGCAGATCCAGCTGTCTGCCAAAGACTTTGAGAACGAGAAGCTCGATCGGCACAGTTTACAGCATCAGTTGCACAAGGTCCTGAAAGAGCTGCGCAAGGCTCGGGACCAAATCACGAGACTGGAATCCAGCCATCAACAGAGCGAGTCTCGTTTCTCTGAGCCAAGTTCTTACAACAAGCTGGAGTTTGATAGGCTGTCCATTGAGGATCCCATCCCCACCTCGCCCTCCAAAAGCCTTCTGGACGAGAGTTTCCTGGAGTGTCCAAAGTGTAGAGCCCCATACGCCACCAGTCAACACAGAGAACTGCTGGCCCACCTCGACTACTGTTTCACTTGAACAGCCTCTGGGAATTAACAAGGGAGTACATCTGGCCATTCTCGGTCTTGCTTTTGTCTATAAGATATTGTATTTCTATAATCTTATAAGAGGAAGTCTATTTGGTTTGTGTTTATGCTCTTTTTACATGACGATGTTTCTTTCCCATTTTTGTATGTGTCTACTGATGATCTACTGTAAGTTCCTGAAGGTGTGTTTACCAATAAATCAGTGACTATTTTTGATTGACAAGAATAAACTATTttgaattattattatatatattttttgtgatttaaaaaaaatcttatgTGGATGGTTTTGTCATAGAACGTATGTAAGATTAGAACATGAAACAAGTGTTCACCACATAGGTCCTTTATTTTTTCTGTTGTACCTCATCTTTCTATAAGCATTGTTTGCATTCCTAAGGTGTATTCCATCagttttaaaggcccagtgcagtcaattcagtttttcatgtgttttgtatcatattggTACAGCtgaggaaactaacactgtaaaagtacGAACAATTTTGAccagtttatttaactaggcaagtcagcgaagaacaaattcttatttacaatgacagcctaccccggccaaaccctaacccggacaattgtgcgccgccctatgggactcccaatcacagcctgttgtgatacagcctggaatcgaaccagggtctgtagtgatgcctctagcgcttagaccgctgcgccactcaggagccaatGGATTGATCCCCAAGCCACAATCCTAATGCACCGCTTTAGTGTCCTCTACTCAGACCACTCTGAtattcctagcaaaattcttgcttgagaataGTTTTGTTAAAAAGCAATTTtcaattttctttatttttgaccattaGAATGGACAACTATCACAGTAAGTtacttgttacccagaaatgacttgatattgagataaaaaattGCTGCACTGGGCAATGTTACATGTGTGAGTAAGGCCCACTTCCGCCTCAGTTCTTACTTTGCAAACCAGCTCCAATGAGATTGCATGAGTAAGTCCTTGCATTAAACTATTTAAGGCCAAGGATTAGCGAGGCTTCTCTTGGGTAGGGGAAAAGAGGTTCATGTGTGTCTATTCAAGGAACGTTACAACAAGGACTTAGCTTTAAGGTTACTGCTGCAGAATACTCATATGGTTGGTTCCAAGCAGTGCGTTATGAATAATTCTCAGTTTGATgccttttttaaaattgtatttatacATTTTGAAACCAGTTTGGTGATAAATAGATTATTGTCCTTTTTCAGATAATTGGGTGTCTTTgtttttcatttgatttgatttttgtttTGGCCTGTATCCAAAAGCTATCTTTACACTTTGTTATACACTGTACAAAAATGTGCAATAAAGATGATAGTGCAATGGCTATCAACACAA
>XM_021564831.2
TGATAAAAAATGAGTGCCCGCGTCATCTGACACCCGGATATGACGCCTGACGCGCTGCATTCAAACTTGTTTTCAACTTGGAAGCAAGAAAGTGTCCGTTTCATTCTCATAAATCAAGCATCCTAGGTTGTTATTTCGGAAACAGAGTCCTACATTTTTTTCTAGGTAACACGCCAGACATGGCATCAAAAAGCACCAAGGATATCATTGTCAACAAGTTAGGCTTTAAATCCAGTGGCTCAAAGCAAGCAGACATGGAAATGGACAGACTCAGGAAGGAAAATAATCACCTGAAGAAGATGATGgatgaaatatcaaaacgaacggCGAGGCCACCAGACTTGGACAAGAGCAAACTGCTAGAGAAAATTCTGTCTCTGGAGACATTAAGGGAGAGGAACACTCAGCAGCTGCTGGCAAAGGACAAGGAGGTGGAGACTCTGAGACAACAGCTGAGTTCCAGTGGGGGAGAGGTGGTGGCATCGCTCCAGTCTCAGCTGGaccaggggaggagagaggcagagcacAGAGAGAAACTCTTCCAGTCCCTCTCGGAGGAGACGGGGAACCTGAAGAACAACTTGGTGGCAGTGTCTGCAAGGTGTCAGGAACTGGAAGAACAGTTTCCTGATTTCCAGAATGGCAGGGTCCCCACCGGTGAGGTTGCCGTAGTTCAGGATCACCTGAGAGATGCTTTGGAGAAGAACCAACAGTGGATGGTTTATGACCAGCAGCGAGAGGCCTATGTCAAGGCAGTCCTGGCCAGAACCCTTGAGTTGGAGCAGCAACTAAATCAAGCCAACCAAGCtctccaacaacaacacaaagaaggCGATTCAGCCGCACCTGAGAAGTCTTCCCCCCAGCTGCAGGAGTACTACGACAAGCTTCTGCTGCAGGCCAAGCGGGACGTGGAGGCCCAGAAGGAGGCTGCTGCGCGGGCCCAGGGGAGGTACGAGGAGCGCTGCCGGGAGGTGGCCGAGGCCCAAGAACAGCTCCAGGCCGAGCGCCTCAGCAGGAGACACAGAGTCAGCGAGGAGAGGAAGTGCTTGGCTGACAGGATGAGGTCCGAGCGGGACAGCATGGACGCCAGGTTGGAAGACGAGAGGAAGAGGTCTGCTGAGCTTCTGCTGCAGGTGAATCTACTCCAGAAATCTCAGTTAAATCAAaatgaggagcagaggagagttgCTGTACTGGAACAGCAGATCCAGCTGTCTGCCAAAGACTTTGAGAACGAGAAGCTCGATCGGCACAGTTTACAGCATCAGTTGCACAAGGTCCTGAAAGAGCTGCGCAAGGCTCGGGACCAAATCACGAGACTGGAATCCAGCCATCAACAGAGCGAGTCTCGTTTCTCTGAGCCAAGTTCTTACAACAAGCTGGAGTTTGATAGGCTGTCCATTGAGGATCCCATCCCCACCTCGCCCTCCAAAAGCCTTCTGGACGAGAGTTTCCTGGAGTGTCCAAAGTGTAGAGCCCCATACGCCACCAGTCAACACAGAGAACTGCTGGCCCACCTCGACTACTGTTTCACTTGAACAGCCTCTGGGAATTAACAAGGGAGTACATCTGGCCATTCTCGGTCTTGCTTTTGTCTATAAGATATTGTATTTCTATAATCTTATAAGAGGAAGTCTATTTGGTTTGTGTTTATGCTCTTTTTACATGACGATGTTTCTTTCCCATTTTTGTATGTGTCTACTGATGATCTACTGTAAGTTCCTGAAGGTGTGTTTACCAATAAATCAGTGACTATTTTTGATTGACAAGAATAAACTATTttgaattattattatatatattttttgtgatttaaaaaaaatcttatgTGGATGGTTTTGTCATAGAACGTATGTAAGATTAGAACATGAAACAAGTGTTCACCACATAGGTCCTTTATTTTTTCTGTTGTACCTCATCTTTCTATAAGCATTGTTTGCATTCCTAAGGTGTATTCCATCagttttaaaggcccagtgcagtcaattcagtttttcatgtgttttgtatcatattggTACAGCtgaggaaactaacactgtaaaagtacGAACAATTTTGAccagtttatttaactaggcaagtcagcgaagaacaaattcttatttacaatgacagcctaccccggccaaaccctaacccggacaattgtgcgccgccctatgggactcccaatcacagcctgttgtgatacagcctggaatcgaaccagggtctgtagtgatgcctctagcgcttagaccgctgcgccactcaggagccaatGGATTGATCCCCAAGCCACAATCCTAATGCACCGCTTTAGTGTCCTCTACTCAGACCACTCTGAtattcctagcaaaattcttgcttgagaataGTTTTGTTAAAAAGCAATTTtcaattttctttatttttgaccattaGAATGGACAACTATCACAGTAAGTtacttgttacccagaaatgacttgatattgagataaaaaattGCTGCACTGGGCAATGTTACATGTGTGAGTAAGGCCCACTTCCGCCTCAGTTCTTACTTTGCAAACCAGCTCCAATGAGATTGCATGAGTAAGTCCTTGCATTAAACTATTTAAGGCCAAGGATTAGCGAGGCTTCTCTTGGGTAGGGGAAAAGAGGTTCATGTGTGTCTATTCAAGGAACGTTACAACAAGGACTTAGCTTTAAGGTTACTGCTGCAGAATACTCATATGGTTGGTTCCAAGCAGTGCGTTATGAATAATTCTCAGTTTGATgccttttttaaaattgtatttatacATTTTGAAACCAGTTTGGTGATAAATAGATTATTGTCCTTTTTCAGATAATTGGGTGTCTTTgtttttcatttgatttgatttttgtttTGGCCTGTATCCAAAAGCTATCTTTACACTTTGTTATACACTGTACAAAAATGTGCAATAAAGATGATAGTGCAATGGCTATCAACACAA
>XM_021564833.2
TGATAAAAAATGAGTGCCCGCGTCATCTGACACCCGGATATGACGCCTGACGCGCTGCATTCAAACTTGTTTTCAACTTGGAAGCAAGAAAGTGTCCGTTTCATTCTCATAAATCAAGCATCCTAGGTTGTTATTTCGGAAACAGAGTCCTACATTTTTTTCTAGGTAACACGCCAGACATGGCATCAAAAAGCACCAAGGATATCATTGTCAACAAGTTAGGCTTTAAATCCAGTGGCTCAAAGCAAGCAGACATGGAAATGGACAGACTCAGGAAGGAAAATAATCACCTGAAGAAGATGATGgatgaaatatcaaaacgaacggCGAGGCCACCAGACTTGGACAAGAGCAAACTGCTAGAGACATTAAGGGAGAGGAACACTCAGCAGCTGCTGGCAAAGGACAAGGAGGTGGAGACTCTGAGACAACAGCTGAGTTCCAGTGGGGGAGAGGTGGTGGCATCGCTCCAGTCTCAGCTGGaccaggggaggagagaggcagagcacAGAGAGAAACTCTTCCAGTCCCTCTCGGAGGAGACGGGGAACCTGAAGAACAACTTGGTGGCAGTGTCTGCAAGGTGTCAGGAACTGGAAGAACAGTTTCCTGATTTCCAGAATGGCAGGGTCCCCACCGGTGAGGTTGCCGTAGTTCAGGATCACCTGAGAGATGCTTTGGAGAAGAACCAACAGTGGATGGTTTATGACCAGCAGCGAGAGGCCTATGTCAAGGCAGTCCTGGCCAGAACCCTTGAGTTGGAGCAGCAACTAAATCAAGCCAACCAAGCtctccaacaacaacacaaagaaggCGATTCAGCCGCACCTGAGAAGTCTTCCCCCCAGCTGCAGGAGTACTACGACAAGCTTCTGCTGCAGGCCAAGCGGGACGTGGAGGCCCAGAAGGAGGCTGCTGCGCGGGCCCAGGGGAGGTACGAGGAGCGCTGCCGGGAGGTGGCCGAGGCCCAAGAACAGCTCCAGGCCGAGCGCCTCAGCAGGAGACACAGAGTCAGCGAGGAGAGGAAGTGCTTGGCTGACAGGATGAGGTCCGAGCGGGACAGCATGGACGCCAGGTTGGAAGACGAGAGGAAGAGGTCTGCTGAGCTTCTGCTGCAGGTGAATCTACTCCAGAAATCTCAGTTAAATCAAaatgaggagcagaggagagttgCTGTACTGGAACAGCAGATCCAGCTGTCTGCCAAAGACTTTGAGAACGAGAAGCTCGATCGGCACAGTTTACAGCATCAGTTGCACAAGGTCCTGAAAGAGCTGCGCAAGGCTCGGGACCAAATCACGAGACTGGAATCCAGCCATCAACAGAGCGAGTCTCGTTTCTCTGAGCCAAGTTCTTACAACAAGCTGGAGTTTGATAGGCTGTCCATTGAGGATCCCATCCCCACCTCGCCCTCCAAAAGCCTTCTGGACGAGAGTTTCCTGGAGTGTCCAAAGTGTAGAGCCCCATACGCCACCAGTCAACACAGAGAACTGCTGGCCCACCTCGACTACTGTTTCACTTGAACAGCCTCTGGGAATTAACAAGGGAGTACATCTGGCCATTCTCGGTCTTGCTTTTGTCTATAAGATATTGTATTTCTATAATCTTATAAGAGGAAGTCTATTTGGTTTGTGTTTATGCTCTTTTTACATGACGATGTTTCTTTCCCATTTTTGTATGTGTCTACTGATGATCTACTGTAAGTTCCTGAAGGTGTGTTTACCAATAAATCAGTGACTATTTTTGATTGACAAGAATAAACTATTttgaattattattatatatattttttgtgatttaaaaaaaatcttatgTGGATGGTTTTGTCATAGAACGTATGTAAGATTAGAACATGAAACAAGTGTTCACCACATAGGTCCTTTATTTTTTCTGTTGTACCTCATCTTTCTATAAGCATTGTTTGCATTCCTAAGGTGTATTCCATCagttttaaaggcccagtgcagtcaattcagtttttcatgtgttttgtatcatattggTACAGCtgaggaaactaacactgtaaaagtacGAACAATTTTGAccagtttatttaactaggcaagtcagcgaagaacaaattcttatttacaatgacagcctaccccggccaaaccctaacccggacaattgtgcgccgccctatgggactcccaatcacagcctgttgtgatacagcctggaatcgaaccagggtctgtagtgatgcctctagcgcttagaccgctgcgccactcaggagccaatGGATTGATCCCCAAGCCACAATCCTAATGCACCGCTTTAGTGTCCTCTACTCAGACCACTCTGAtattcctagcaaaattcttgcttgagaataGTTTTGTTAAAAAGCAATTTtcaattttctttatttttgaccattaGAATGGACAACTATCACAGTAAGTtacttgttacccagaaatgacttgatattgagataaaaaattGCTGCACTGGGCAATGTTACATGTGTGAGTAAGGCCCACTTCCGCCTCAGTTCTTACTTTGCAAACCAGCTCCAATGAGATTGCATGAGTAAGTCCTTGCATTAAACTATTTAAGGCCAAGGATTAGCGAGGCTTCTCTTGGGTAGGGGAAAAGAGGTTCATGTGTGTCTATTCAAGGAACGTTACAACAAGGACTTAGCTTTAAGGTTACTGCTGCAGAATACTCATATGGTTGGTTCCAAGCAGTGCGTTATGAATAATTCTCAGTTTGATgccttttttaaaattgtatttatacATTTTGAAACCAGTTTGGTGATAAATAGATTATTGTCCTTTTTCAGATAATTGGGTGTCTTTgtttttcatttgatttgatttttgtttTGGCCTGTATCCAAAAGCTATCTTTACACTTTGTTATACACTGTACAAAAATGTGCAATAAAGATGATAGTGCAATGGCTATCAACACAA

Function

NR:

description
centrosomal protein of 55 kDa-like isoform X2

GO: NA

KEGG:

id description
K16456 CEP55; centrosomal protein CEP55

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564832.2 False 3019 mRNA 0.44 9 14168129 14177992
XM_021564831.2 False 2951 mRNA 0.45 9 14168129 14178170
XM_021564833.2 True 2933 mRNA 0.45 9 14168129 14178170

Neighbor

gene id symbol gene type direction distance location
LOC110491410 LOC106578975 coding downstream 7266 14147543 ~ 14160863 (-)
LOC110491406 lgi1 coding downstream 50089 14110577 ~ 14118040 (-)
LOC110491407 LOC106578978 coding downstream 57874 14105705 ~ 14110255 (-)
LOC110491405 LOC106578971 coding downstream 67442 14016935 ~ 14100687 (-)
trnaa-ugc-126 NA coding downstream 111073 14056983 ~ 14057056 (-)
dnajc9 dnajc9 coding upstream 35443 14213613 ~ 14217275 (-)
LOC118939470 NA coding upstream 269027 14447197 ~ 14455717 (-)
grid1b LOC106578986 coding upstream 339149 14517319 ~ 14907970 (-)
LOC110491419 LOC106578987 coding upstream 817250 14995420 ~ 15041584 (-)
c16h10orf88 cssa19h10orf88 coding upstream 993958 15172128 ~ 15176318 (-)
G1343913 NA non-coding downstream 146 14166113 ~ 14167983 (-)
G1343942 NA non-coding downstream 21669 14146235 ~ 14146460 (-)
G1343941 NA non-coding downstream 21969 14145781 ~ 14146160 (-)
G1343940 NA non-coding downstream 22473 14144939 ~ 14145656 (-)
G1343939 NA non-coding downstream 24528 14143058 ~ 14143601 (-)
G1343997 NA non-coding upstream 85628 14263798 ~ 14320541 (-)
G1344106 NA non-coding upstream 230928 14409098 ~ 14409309 (-)
G1344123 NA non-coding upstream 243145 14421315 ~ 14421527 (-)
G1344148 NA non-coding upstream 257527 14435697 ~ 14436031 (-)
G1344187 NA non-coding upstream 278833 14457003 ~ 14457320 (-)
G1343452 LOC106578962 other downstream 533951 13585136 ~ 13634178 (-)
G1343278 NA other downstream 916461 13251434 ~ 13251668 (-)
G1342941 NA other downstream 1467961 12698986 ~ 12700168 (-)
G1341480 LOC106578921 other downstream 2148615 11946567 ~ 12097768 (-)
LOC110491342 LOC106578908 other downstream 2511566 11652429 ~ 11667766 (-)
G1345259 NA other upstream 1073207 15251377 ~ 15253570 (-)
G1345561 NA other upstream 1520815 15698985 ~ 15699263 (-)
G1347067 NA other upstream 2746352 16924522 ~ 16929432 (-)
G1347343 NA other upstream 3017160 17195330 ~ 17196129 (-)
LOC110491477 psme3 other upstream 3211215 17389099 ~ 17394265 (-)

Expression


Co-expression Network