XLOC_032319 (si:ch211-286o17.1)


Basic Information

Item Value
gene id XLOC_032319
gene name si:ch211-286o17.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 47424266 ~ 47462413 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063093
CTTATGTGTTACACAACTTACAAAGATGATATATATTTGATTACATACTGCAAGTTCTCCGAATGACATCACAGCACTCCAGAAAGTCTCTATTTTGTTTTATGCTGTTTTAACGTGAACTAAAAGGTGCAATTTGAGCTACTCTGGATAAAAGCACAATATACTCCGTAATTACAACAGCGCTCAGGGAATGAAGAAAAGAGGAGaatagtgtgtgcgtgtgtgtatgtgtgtgcgcggtgAACGAGAGGGGGGAAGGGCCACACATGAGTCTATAAGAGCAGACATCAGCTTTATCCTTCTGTGACACTCACTCAGGAACGAACCCgaacaaactcacacacacatacatacacacacactgatcctCGGGATGGCGacacagaaaaaaagccacaAAGCTTCATATTGCGCCTTCTTCATCTGTCTTTTTGCCGTCTTATTTCAAGGTGTGATTTGTGAAGAAAGAGCTGTGCGTGGGGATGGTGATCTACTTATTACGACACCTAAAGATACCTCTCAGATGCAGATTATCATTTTTCCCACGTTCATAAACGATTCAACACCCGCAGTAAATGGCAGCAGTGAGGCTCACTCAACTCAACGTACCAAAACCAGCAACACAGTCCAGCCTGAAAAACACAGTGTCACTTCAAAGAGCAATGTGGTCTGTGTGGATAAAAAACCAGAGCAATACAAACATGATGTGCTGCTGAAACTAAAGGCCTCCTCCACATGTGAAGAGACTAAAGCCAAGATACAGTATGTTCTAGACGTTCTCTGTGGTGAAGACTGCAAACTTGAAATCTATCAGATAGACAACACTGATGAGGTCATTGTTTATGGAGACAGCATTGAAGATGATCCTAAAGGAATGGCTGGGAAGTTCAACATCGACAACATTACAGATAAGGTGAATGTAGACGAAGCAGTGGCTAACATGGGCCAACGCTCCAAAATTGTCCTGATCTCTATTCTGATAGCGGGTTTGCTTCTCGCTGCTTTGCTAATTGCTGGATACATTCTGAAGACTCATCGAGGGAAATCAAAAGGGATGCGACTGGCTGAGGACTCTTTCCAAGTGGACCAAGAAAACCAAGGCAACACACTGCTGTCTGTGGCTCCTCTGCCTCAACAAGAACCTCTGGACAAGCCCATCATCAATGGAGAATCTCCAGACTCGCCACCCACCAACGGACACAATGCCACCCAGACACAGGTGGCAGATACTCCCATGTAATAGGATCAGAGTCAACATCAgaccaataaacaaacaaaaaaaagagttatCATACACACAACAACACTTGATGTGGTAAAAACTGCAACAGAGACGATGGTGCTGAGGAAAACAATGATGAAAGTACAAGAAAGACTGATCTCTGGGTAGCTCTTTTATGTAAAACTGAGAGATAAAAGAAGCAAATCTGCTCCAGTTGTGCTTGAAATGCTGAATAACTCCACATCTATTGCAGTATATAGAAAcatcaaacattttaaatatgttttgacTCCAACAGTGCAAAAATTTATAGATTCTGTGCCAAAGAATAGATCATTTTTTAAGGAATTTGTAAACTGCAAGTAATGAATAGGATTCACATTGTGCATTTAGATGAGCCAACATTTCAAGTATGCCTTTTCAGTCTGGAAAAGCATGCTCAACAGCTTTTTCATATACAGTAGCACATAGAGACACAGATGTTTCTTaacatcaattaattaattacatatcATAAAATGAACAATGTAGATTATAACAGTTATTAAATCCAGTTAGGCCAATGCCTCTATTTGGTGTTTAACTTGTGTTCGGGTGTTAACACTTGTTTGGAGTTTTGTTAGGACTCTTCTTACTTCGTCAAACGTATGAATGGACAAACCTACATTAAGGCAGCAGGAAAGCAAGCGACTAAAAAAAGAACAATTTCAATCATAATCCATCTATTCCGGCAGTGAAGTATGAAGTCTATAGTTTTGTTGCGATTTTACACAATACATCCCATAACAATCACATTCAGTCAGTCTCCAAGGTCTTTTTTTGTAGGTTGGTTATACAAGTGCTCACGCTACGAAAGCAATCCAGTctaaagcattttcaaaaaagtggaCAAGTGAAAGTGGACAAGTTTAAAACATACTACTGTACAATCTGATTTTAGCTTCATCCACTTGTGTTTATAATTGACAGTGAtgcatcttaaagggatagttcacccacaaatgaaaagttacttaatatttactcaccctcaagtgattatAAAGCTTTATGAGTTGCTTTAGTCCTATTCAGACGAAAGCTGAAAAACGGTAACCGTTgacatacatagtaggaaaacaaataccatggaagtcaaccCAGCAAGCACAAGATGTCAAACACTGATGTCATACTGACGTTGTACCCATGGGGACTTTGCAtttagtttggaaatgaaaattgggttgatgtcaaAATCCAACATCCAATTTAAAATCATCCAAATATAAACATCTAATGGTGTAACAGCTTGACCTTGTGTGGAGGTTACCAGTATgccgtctatcagacgttggattttggttgctatacctaGCAATTGAATATATGACGTTGTTTTCAGATGTTGACTCGATGTTGGGTTTTGGtctctttccaacacaacctaaaatcaaccatatatcaacatcatttgatgttaaCATTGAATGTCAAAATAACGTCTTTGattaaacattgaattttggtcacctgactttGCAACCTACATCTAACCTAATATATAtgtcttatgctgcgttcacaccagacgcggaacgcatgtcaagcgcgagtgatttacaagttaagtcaatgcaaacacgcgaatagacatcctgcggcgtgataCGTGTGAATGGCGCAGAGCGAATGACGCGAATTACGCAAATGGCGCGATGCGAATAACGCGATACGCTagaggcgaattgagcgtttaacgagcgtttcgcccgaatctctcgaattcgaaaatctgaacttcagcagatatTCGCGCCGCgtaaaccaatcagaagcttgctcttgtgggggcgtgattgtgacgtagaacctgttgatggtgtcctgggggaaatcctccaggcgacaccgacaacaagtcatcaaactgggcttgactcagtcagaagcactgctgaaagcctccgtcatccaggttcagtttctggaggagtttatgagctcacagagctggatgcacctgtGAAAGCATGTAGTGAACTCAGACATGGTCCTAAACTtatcgacgctgttttttagccttcatgaagtacataaacactgttattttctttataaaatacttgttagccatttagcaacgaagctacagtcatcGGGCcaacagaagccctgcccatcacgcgaatccgtgtctgttctgaagtgaattagacacgcgaatgaagcggatttcacgcccgaatgaagcggggtttgacgcgcgaatgaatcgagtaaactcaaatgttcacgcggcaatttacaCGCGAATACCGCGATTTAGCACAGCATTGTGATGTTGTGTGACTGCTAgaaatggttacaggttcccagctttcttcagaatacctcatttcatttttaacagaggaaagaaactcaaataagtttAGAACAAGTGCAGGAtggagtaaatgacagaattttctgtttttgggtgaactatccctttaaaaacaggTGTAAATGAGAGTAATTGATGGTTtcttcatgtattttttttttactttgtaagcTGTGctgcaaacaaacacaaattaacaataatactaatagaTGAACTGTTTATGTAAAAGAAAACTTGTCATCCTTAATTTTTTGCttattattgtttgctttaaACAGTCTCCATCAAGGACACACAGTTGCCTTTTGTCACCTAGCAAACCATGGCCTTTCTCCAACACGTATACAATCATATTCAATTGTATATGTTAGGATTTTCCAATTGCCACTCAATTCATTAATGTCCAAGGTTTTCTGTGCATTTCAGACATGTATTCGTTTGGCAGATGCTTTCATCTAAAGCAACTCAAAAAAACAAACTACATAATCATGGCTTCCCTGGAAATTGAACTCAGGACTTTGCCATTTGTAGCATTATGCTTTACTGGGttataaattaagtaaaatgCTTAAGTGGTAGCTTATTGTTCAGGTACAACTAAAATGCATTCTGGAAACACATTTGCAAACCTAtctacagatgaagtcagaattattaaaccccctgaattattagccccctgtttattattttccccaacttctgttaaacggagagcagatatttttcaacacatttctaaacataatagttttaataattcatttctaatcactgatttattttgtctttgcaatgatgacagtatataatatttgactagatctttttcatgacacttctatacagcttaacgtgacatttaaaggcttaactaggttaatatgggcaagttagggtaattaggcaagtgttttgtacaacgatggtttgttctgtagactatcgaaaaaatatagcttaaaaggggctaataatttttaccttaaaatgttttttaaaaaataaaaccagcttttattctagctgaaataaagcaaataattttttctccagaagaaaaaaatattagacatgctgtgaaaatttccttgctctgttaaacatcatttgggaaataatttaaaaagaaaaaaaaattaaaggggggttaataattttgatttcaactgtaaatggTAATGGCTGATGAATCACAGTCATCATCACACGATCACTATCACAGGatagctctcacacacacacacacacacaaaaaaatcatcGTAGCTTTACAATTTTTGTAATTGCCTATATTTTTATACaaagtatattttgttttatacatttttttttgtttagtgtgTAGTCTAGACATTCAGTTAATCATTTGAAGAGAAAACCTAAATGAAGTAAAACATGAAGATTATTGATGGTTTATTGTTTTGTGAAAGagtatgtgtgtatatgagtgGGTGCTTATATTTTTTTGTCTCACCATTTTAAATTTCTTTGCCAAAGTTTTGCAGTATAGTACAATTTTCACAAtgctaaaatgtaaaaatcagtACTTCAGGCTGATTTTAGTGGTTTATGTTTGTTAACTGTACTGTAAAtgatagaaaaataaatcaaaatcttGAAAAATTCAATAAACGTCAAGTTGTCACatttatctttaaataatttctaCTGAATTAACTATCTAAAAAATGAGGGGAAGTAAGCAGATGTAAATGTTCCAATACATATTTTTACTCGCACACCTAAAAGCTCTAAAAAAATGTAATCGCTGGGTtatattttgtgaaataattTCAAATTTCTTTGCCAAAGTTCTGGACaaaacaattttcaaaatgttaaaatgtaataCCCGAGTGTCAAGgttttttttgcccttgagttcgagtcatttgattttgagtatctaccgataccgaaacctGATCTGATACTTAAATactaatacataaaaaagaattaaaaagagTGAAGAAATAGATCCAGGATagtccttttttttatttaatccactttatttaaaaattcaacaacttagttaacaaacagagcacttctgtgaagtagcttgaaaaataaagtaataaaaacatcaattctTTACTTCTGGTTCTGGACGTTAGTGCAACAGTAGATATAAcaataaatctaatataaaaacaaatatcaccttaacttaaaacatttggcaggcaatcccaagtttacatatctcacagtttgcaaTGACATGCTGCACACGTTGCTGTTTTTCTGTGTCATGAAAGAAGTCTAACTCTGCTACTGCATAACTTgagaatatataatatacatatatattcaagtcCTGATCAGGAGGTAACGTCTGATTCCGATTAAGTCTGAAACCATGTGATCGGGCCCAATTTCCAatcacgtgatcggatctggacatccctagttcTAACACACATTTTTACTCACACACCAAAAAAAGCTCTGAAAAAACGTTGTCACTTTGggttatgtatattttttctcATAACTTCAAATTTTTTCACCAAAGTTCCAACTAAAACAATTTTTACTATGCTAAAATGTAATATCGGTGATTAAGGCTGATTTTAGTAGTTCATGTttgtttactgtactcaaatttttgaaaattaaatcttg
>TCONS_00063094
GGGAAGGGCCACACATGAGTCTATAAGAGCAGACATCAGCTTTATCCTTCTGTGACACTCACTCAGGAACGAACCCgaacaaactcacacacacatacatacacacacactgatcctCGGGATGGCGacacagaaaaaaagccacaAAGCTTCATATTGCGCCTTCTTCATCTGTCTTTTTGCCGTCTTATTTCAAG

Function

symbol description
si:ch211-286o17.1 Predicted to act upstream of or within cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CD34 (CD34 molecule).

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-411 Predicted to act upstream of or within cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CD34 (CD34 molecule).

Ensembl:

ensembl_id ENSDARG00000100446

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063093 False 6230 mRNA 0.37 8 47424266 47462413
TCONS_00063094 True 197 mRNA 0.46 1 47424518 47424714

Neighbor

gene id symbol gene type direction distance location
XLOC_032318 CABZ01055225.1 coding upstream 146009 47278139 ~ 47278257 (+)
XLOC_032317 NA coding upstream 442394 46980117 ~ 46981872 (+)
XLOC_032315 NA coding upstream 449019 46770695 ~ 46975247 (+)
XLOC_032316 CU634018.1 coding upstream 553968 46870184 ~ 46870298 (+)
XLOC_032314 CU639408.1 coding upstream 674642 46749506 ~ 46749624 (+)
XLOC_032320 NA coding downstream 3355 47465768 ~ 47475780 (+)
XLOC_032321 padi2 coding downstream 381347 47843760 ~ 47865858 (+)
XLOC_032322 CU694362.1 coding downstream 512466 47974879 ~ 47975014 (+)
XLOC_032323 si:dkey-92f12.2 coding downstream 579346 48041759 ~ 48058745 (+)
XLOC_032324 NA coding downstream 602463 48064876 ~ 48066888 (+)
XLOC_032329 CU137649.2 non-coding downstream 1142410 48604823 ~ 48604937 (+)
XLOC_032331 NA non-coding downstream 1258168 48720581 ~ 48917595 (+)

Expression


Co-expression Network