XLOC_003232 (dnase2b)


Basic Information

Item Value
gene id XLOC_003232
gene name dnase2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 8170948 ~ 8179145 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006374
AATGTCTGTCATGAgacacacttcctcttttttacacTACGGTAGCTGCTCGGAACTAGAGAAAACGTCTCTCTTTCTGTTGTCATTCAAACAGGAAGCTTAGACAATTTCCAGACAGAAatgtttgtgttgtttcaactttcTGCGTGCTGCTTGTTGTTTTTGATGGGTTTCTCGGAGGCAGTGATATCCTGCTTAAATGAGGATGGTCAGCCGGTGGACTGGTTTATTATGTACAAACTTCCCATTTACAAGATGGAGGTTAAGGGAAGCGGAGTAGACTACATGTATCTGGACCCATCCATCATGGATTTTCAGATAAGTAAATATACAGTCAACAGCAGTACTGGAGCTTTAGGAAGAACATTGACACAGCTCTACTCTGGCTATACATCCAACAGCTCAGTGTATATGCTTTACAATGATGCTCCACCAGAACTGAAGTACCCAAGCAAGTACGGACATACAAAAGGGGTGCTGATGTTCGACCAGGATCAGGGATTCTGGCTCACACACAGTGTTCCTCATTTTCCTCCGTTCCCAGAAAGAAACTACAGCTACCCTCTCACAGGAAAATACTACGGACAGACTTTGCTCTGCATTACATTCAACTATACACAATTCCCTCGTATATCATGGCAGTTAGCGTATCTAAATCCACGTGTGTATAATTGCTCTGTCCCTGTGGCGTTTCGCCCCGATATTGGAGAAATGGCACAAATTTGTGATGGAAAGACACCTGCCATAAAAAACAGGAGGAGTTTGCAAAAGCTGCAGTCAGTTCAAGGACAGACGTTTTTCAGTTTTGCCAAATCACAGAACTATGTGGATGATATTTACACAGGCTGGGTTGCTCAAGCACTAGGGACAGATCTACTGGTGGAATCATGGCTTCACCAGGCTCATCAACTCCCCTCTAACTGCTCCCTACCCTGGCACGTGATGAACATTAACGCGGTCTGTCTACCCGGACCTCAGATGTTCAGAAGCTATGAGGATCATTCTAAGTGGTGTGTGTCTTACACTTTTAAAGACCAGTGGACATGCCTGGGGGACTTGAACAGAGATGGTGGTCAGGCTGGCAGAGGTGGAGGGTTAACATGTTGTCAAAACTCAGTTATTTATAAAGCTTTCCGTAAGGCCATGGCCAGATATAAACACTGCTGAAAAATACAGCACTGAGCAGCTCTGGACATGTATTGCTCAATGCAAGGGATTTTAACCCCTGGATGAAAACCTGCAGGTAATACAGTTTAACAACAAGACAGTGCAGAGTTAaacataaatgagtacagcccatgttcatttattttttttttttttggctcagtccctttattaatcattggtcgccacagcggaa
>TCONS_00006375
atgtttgtgttgtttcaactttcTGCGTGCTTGATATCCTGCTTAAATGAGGATGGTCAGCCGGTGGACTGGTTTATTATGTACAAACTTCCCATTTACAAGATGGAGGTTAAGGGAAGCGGAGTAGACTACATGTATCTGGACCCATCCATCATGGATTTTCAGATAAGTAAATATACAGTCAACAGCAGTACTGGAGCTTTAGGAAGAACATTGACACAGCTCTACTCTGGCTATACATCCAACAGCTCAGTGTATATGCTTTACAATGATGCTCCACCAGAACTGAAGTACCCAAGCAAGTACGGACATACAAAAGGGGTGCTGATGTTCGACCAGGATCAGGGATTCTGGCTCACACACAGTGTTCCTCATTTTCCTCCGTTCCCAGAAAGAAACTACAGCTACCCTCTCACAGGAAAATACTACGGACAGACTTTGCTCTGCATTACATTCAACTATACACAATTCCCTCGTATATCATGGCAGTTAGCGTATCTAAATCCACGTGTGTATAATTGCTCTGTCCCTGTGGCGTTTCGCCCCGATATTGGAGAAATGGCACAAATTTGTGATGGAAAGACACCTGCCATAAAAAACAGGAGGAGTTTGCAAAAGCTGCAGTCAGTTCAAGGACAGACGTTTTTCAGTTTTGCCAAATCACAGAACTATGTGGATGATATTTACACAGGCTGGGTTGCTCAAGCACTAGGGACAGATCTACTGGTGGAATCATGGCTTCACCAGGCTCATCAACTCCCCTCTAACTGCTCCCTACCCTGGCACGTGATGAACATTAACGCGGTCTGTCTACCCGGACCTCAGATGTTCAGAAGCTATGAGGATCATTCTAAGTGGTGTGTGTCTTACACTTTTAAAGACCAGTGGACATGCCTGGGGGACTTGAACAGAGATGGTGGTCAGGCTGGCAGAGGTGGAGGGTTAACATGTTGTCAAAACTCAGTTATTTATAAAGCTTTCCGTAAGGCCATGGCCAGATATAAACACTGCTGA

Function

symbol description
dnase2b Predicted to enable deoxyribonuclease II activity. Predicted to act upstream of or within DNA metabolic process. Is expressed in several structures, including digestive system; gill; immune system; integument; and retina. Orthologous to human DNASE2B (deoxyribonuclease 2 beta).

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0004531 deoxyribonuclease II activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090824-2 Predicted to enable deoxyribonuclease II activity. Predicted to act upstream of or within DNA metabolic process. Is expressed in several structures, including digestive system; gill; immune system; integument; and retina. Orthologous to human DNASE2B (deoxyribonuclease 2 beta).

Ensembl:

ensembl_id ENSDARG00000077918

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006374 False 1363 mRNA 0.44 6 8170948 8179145
TCONS_00006375 True 1014 mRNA 0.45 7 8171068 8178949

Neighbor

gene id symbol gene type direction distance location
XLOC_003231 samd13 coding upstream 9799 8152872 ~ 8161149 (+)
XLOC_003230 prkacba coding upstream 20054 8129536 ~ 8150894 (+)
XLOC_003229 NA coding upstream 199918 7880142 ~ 7971030 (+)
XLOC_003228 NA coding upstream 344876 7825353 ~ 7826072 (+)
XLOC_003227 CR450813.2 coding upstream 387634 7782514 ~ 7783314 (+)
XLOC_003233 tbl1xr1a coding downstream 386178 8565323 ~ 8682447 (+)
XLOC_003234 CR847563.1 coding downstream 398909 8578054 ~ 8580557 (+)
XLOC_003235 NA coding downstream 496824 8675969 ~ 8677720 (+)
XLOC_003236 CABZ01079837.1 coding downstream 1332388 9511533 ~ 9522073 (+)
XLOC_003237 NA coding downstream 1422600 9601745 ~ 9603070 (+)
XLOC_003250 BX324177.11 misc downstream 3166658 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 3193741 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 3207217 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 3238888 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 3250248 11429393 ~ 11429689 (+)
XLOC_003224 NA non-coding upstream 884638 7281239 ~ 7286310 (+)
XLOC_003218 CU929070.2 non-coding upstream 1020042 7150820 ~ 7150906 (+)
XLOC_003238 BX005472.1 non-coding downstream 1719368 9898513 ~ 9898630 (+)

Expression


Co-expression Network