XLOC_032320


Basic Information

Item Value
gene id XLOC_032320
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 47465768 ~ 47475780 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064958
TTCCGCTCCTTTTGTTCCACAGATGTTGCGACAGAATCCAGAGCTGCGCATTAAATGGTCGCCTGTACCATGTGACCTCATCCAATGTTTGTAAACACGCGTCAAGCACATGTGATCCCGAAGTGTTCTCGAACGTGTAAAGCGCCTCGGCCAATCAGAAGCCGGGGGAGTGTCTGTGGGCAGGGTTTGAGTATTTCGCCCTGGAAAAATCGATAGGGATCTTGTAAATGATGCGAGGAGTCTATGCCTCAAGAATGGGAACTGAGGAGTTTGGACGGACGGAAAACAAGTGAAGTGTGCAGGCATCCGCGGCATGCAGATGATTCATAAAAACACGCCATGAAAAGACAACCCCTTGACTGTATCAATtggCAAAACCTGCAATGCTGCTCCTGGAAGCTGAATTCAGATGGTGCCATAGAGTATTTTATGGCATCTAGCACCATTTGAAATCAGTGTTCCTGGGCCGGTCCTGACATCCCGTGGTGCATCTAAATATTGTGGACTGCTGATATTCTACTGCATTGATTGTGATTTTGTACAGCGCCATTGATGTGATCGAAGACCTGTGATGATGCCATCCAGAGGACCTTAAGGACAACACAGATGAAGAACTGATACCAACCACAGAGAACTTCTAGAGGTCTCtgtaatcctggaccaggccatatcctaagcagatgctgtggcagtcatggaggagtatagagcatgagactgattcctgaaagaccccagtgacagatgagtctctgcattgatccaGTGGGCTAGCCTGAACACCCACCGATGATCTACTCACACCGACAGCTTCTCCAAGATGgatgtccagcattctccagtgcctacagctctgcacaagaagtttaaccagaggagaaatggttgtgcccaacttagcctggtttctctctaggctTTTTTTCTTAACTTTCGTCAATtgctgaagtttgttcctcaccactggcttgcttggtttgagacttgtggaactgcacatcgatggatttgctcttcaatgtttgaaCTTTCAGGAGTAAAAAATTGAACCACActgaaataaactaaactgaacttcaactctgaaaactagactgacagtttcaa
>TCONS_00064959
CAGAGCTGCGCATTAAATGGTCGCCTGTACCATGTGACCTCATCCAATGTTTGTAAACACGCGTCAAGCACATGTGATCCCGAAGTGTTCTCGAACGTGTAAAGCGCCTCGGCCAATCAGAAGCCGGGGGAGTGTCTGTGGGCAGGGTTTGAGTATTTCGCCCTGGAAAAATCGATAGGGATCTTGTAAATGATGCGAGGAGTCTATGCCTCAAGAATGGGAACTGAGGAGTTTGGACGGACGGAAAACAAGTGAAGTGTGCAGGCATCCGCGGCATGCAGATGATTCATAAAAACACGCCATGAAAAGACAACCCCTTGACTGTATCAATtggCAAAACCTGCAATGCTGCTCCTGGAAGCTGAATTCAGATGGTGCCATAGAGTATTTTATGGCATCTAGCACCATTTGAAATCAGTGTTCCTGGGCCGGTCCTGACATCCCGTGGTGCATCTAAATATTGTGGACTGCTGATATTCTACTGCATTGATTGTGATGTATGTCATTAATAATGTCTGAAATAAACTAAACAATTTTTTGCATGCTTTAAATGTACGTGTCTATATGGTCTATGTTgcaattttgtaaaaatgtaaagtaaCCATGCTGTCATTTAAAGTCATTTCATTGTCATGAATAAAAAAGTCCCTTGTTTTTAAACTTATtacatgaattaaaaaaacaacataaatcaTCAATATTTAGTCAGTAATAATATGTCAACCTTAGAAGAGTTAAGACATTAATAATTGGAGTAATACTGATTTTCAgacacaacaaataaaaaaattgtcattttatggagaataaaaaagatatacagtatataagtaTGAAGTGCCATCTGgaattttcttctacaatgagcatttttgTCAGCCtctaatgtttatgttcagttatttcatattaaaagtgatgaaaataacctatttttgccataaaagtaaaaaaaaaaaactgaatcaagACATTAAGAAAAATGCTGATATTAGAAGAAAATCTCAGATGGCACTGAAGAGATttgtttgcatctgaactcttcatatgatAATACTTGAATAAAATGTTCAGAACTTTATAAAGTCTAATATCACTCGGCTTATTAGTCCCtgattaatcagaggtcaccacagcggaaggaaccgccaaaTATATGATATAGcctatacaaacatacatactttACTAGAAGGTTAGATTGGTCGACTGACCTTTCTTTGCCAATAAATATTAAGTTcatcaaatattattaacaaacTATTGAAAATGATACCTGAAAAAAAAACCTAGAAAAACTGTACGTTTACCCATAAATTGGATAAAAAGTTAAACAGAAAACTTGAAGATGGCTGTTTGACAGTGACATGAGTTTACAGGGCCACCTGTTGGAAAgaatggaaaaag
>TCONS_00064960
AGCGCCTCGGCCAATCAGAAGCCGGGGGAGTGTCTGTGGGCAGGGTTTGAGTATTTCGCCCTGGAAAAATCGATAGGGATCTTGTAAATGATGCGAGGAGTCTATGCCTCAAGAATGGGAACTGAGGAGTTTGGACGGACGGAAAACAAGTGAAGTGTGCAGGCATCCGCGGCATGCAGATGATTCATAAAAACACGCCATGAAAAGACAACCCCTTGACTGTATCAATtggCAAAACCTGCAATGCTGCTCCTGGAAGCTGAATTCAGATGGTGCCATAGAGTATTTTATGGCATCTAGCACCATTTGAAATCAGTGTTCCTGGGCCGGTCCTGACATCCCGTGGTGCATCTAAATATTGTGGACTGCTGATATTCTACTGCATTGATTGTGATGTATGTCATTAATAATGTCTGAAATAAACTAAACAATTTTTTGCATGCTTTAAATGTACGTGTCTATATGGTCTATGTTgcaattttgtaaaaatgtaaagtaaCCATGCTGTCATTTAAAGTCATTTCATTGTCATGAATAAAAAAGTCCCTTGTTTTTAAACTTATtacatgaattaaaaaaacaacataaatcaTCAATATTTAGTCAGTAATAATATGTCAACCTTAGAAGAGTTAAGACATTAATAATTGGAGTAATACTGATTTTCAgacacaacaaataaaaaaattgtcattttatggagaataaaaaagatatacagtatataagtaTGAAGTGCCATCTGgaattttcttctacaatgagcatttttgTCAGCCtctaatgtttatgttcagttatttcatattaaaagtgatgaaaataacctatttttgccataaaagtaaaaaaaaaaaactgaatcaagACATTAAGAAAAATGCTGATATTAGAAGAAAATCTCAGATGGCACTGAAGAGATttgtttgcatctgaactcttcatatgatAATACTTGAATAAAATGTTCAGAACTTTATAAAGTCTAATATCACTCGGCTTATTAGTCCCtgattaatcagaggtcaccacagcggaaggaaccgccaaaTATATGATATAGcctatacaaacatacatactttACTAGAAGGTGAGATTAGTCGACTGACCTTTCTTTGCCAATAAATG
>TCONS_00063095
CTGCTCCTGGAAGCTGAATTCAGATGGTGCCATAGAGTATTTTATGGCATCTAGCACCATTTGAAATCAGTGTTCCTGGGCCG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0009063 cellular amino acid catabolic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0009074 aromatic amino acid family catabolic process biological_process
GO:1901606 alpha-amino acid catabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process biological_process
GO:1902222 erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process biological_process
GO:0006558 L-phenylalanine metabolic process biological_process
GO:0006559 L-phenylalanine catabolic process biological_process
GO:0006570 tyrosine metabolic process biological_process
GO:0006572 tyrosine catabolic process biological_process
GO:0016054 organic acid catabolic process biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen molecular_function
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen molecular_function
GO:0004175 endopeptidase activity molecular_function
GO:0004180 carboxypeptidase activity molecular_function
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008235 metalloexopeptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008238 exopeptidase activity molecular_function
GO:0140096 catalytic activity, acting on a protein molecular_function
GO:0017171 serine hydrolase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000080152

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064958 False 1107 lncRNA 0.46 3 47465768 47475780
TCONS_00064959 False 1407 lncRNA 0.36 3 47465806 47469478
TCONS_00064960 False 1131 lncRNA 0.35 3 47465908 47469288
TCONS_00063095 True 83 miRNA 0.47 1 47467910 47467992

Neighbor

gene id symbol gene type direction distance location
XLOC_032319 si:ch211-286o17.1 coding upstream 3355 47424266 ~ 47462413 (+)
XLOC_032318 CABZ01055225.1 coding upstream 187511 47278139 ~ 47278257 (+)
XLOC_032317 NA coding upstream 483896 46980117 ~ 46981872 (+)
XLOC_032315 NA coding upstream 490521 46770695 ~ 46975247 (+)
XLOC_032316 CU634018.1 coding upstream 595470 46870184 ~ 46870298 (+)
XLOC_032321 padi2 coding downstream 367980 47843760 ~ 47865858 (+)
XLOC_032322 CU694362.1 coding downstream 499099 47974879 ~ 47975014 (+)
XLOC_032323 si:dkey-92f12.2 coding downstream 565979 48041759 ~ 48058745 (+)
XLOC_032324 NA coding downstream 589096 48064876 ~ 48066888 (+)
XLOC_032325 phc2b coding downstream 679174 48154954 ~ 48199276 (+)
XLOC_032314 CU639408.1 non-coding upstream 716144 46749506 ~ 46749624 (+)
XLOC_032329 CU137649.2 non-coding downstream 1129043 48604823 ~ 48604937 (+)
XLOC_032331 NA non-coding downstream 1244801 48720581 ~ 48917595 (+)
XLOC_032332 NA non-coding downstream 1444786 48920566 ~ 48923357 (+)

Expression


Co-expression Network