LOC110491438 (LOC106579000)


Basic Information

Item Value
gene id LOC110491438
gene name LOC106579000
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 15373276 ~ 15379477 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564888.2
CTGAGGCTGATATGATCTTGCTTGGGCTATGTAGTGAAAACCTTAAGACAATCCTTGCTTTAGTGAGTGCTTCAGGAGCAGGGGCCTTTTAGTGCTGTTGCAGGACATGTAAAGCGTGGTGTGAAAGGCCTCAGTGATTCCCGTCGGGCCAGTAGAAGGTATTTTAATGGCTCACTGACCCCAGTAGCCAGGCTGTCACCACCTCTCTCACAGGGTCCGCATTGTGCTGCTGTTAACTAGACATCAAGACCCCAGAAACGCAGGAGGCTCCAGCAGGCCCCTCTGACCGAGGGGCCACAAAAGAATGAAATGGAAGAAAAACAAGAGCACCTCACAAAAGGTCTTAACATCACATGGTTGGCTGGAGAGACCAGGAAGGGAGATATGTCTTTACATATCGGCATGCCACCGAAACATCAATTCTTCATGCAACTCTTCACTACAAGGGAGTGCCCTGTGCCCCAGTCATTATGTGATCATCATGCCTATGTTTATccagaatggaatggaatagacaTTATAGTTCAAACAGTCAAAATGAATTTAATTAGTGAGGTTTAgagtgtaaatgctttttttaaatgatgtatgaaAACCtttaatagtaatataatataattccTGTTTTCATAGTTGCAATATCTAAAGTACTGTAAATTTAACAGCAGCCAGCACATacagttattctacaatgtgggaGATCTGCGGACTTGACTCTCTCGTTGGCTGGGCGCTGCAAAGCGTCACCATCTGTCACTGCTAAAGCAGTAGTCTACCCCCTGGTCTCTCTGTCAGTAAGAAAACAGTGTGGAGCAAAACGCTGTGAAGTTTGCCATACGACTTACCGATTTAAATGTTGACCTCAAATCTACATATGAGTAAAAAGAAAAACAACTAATCAAGCGCGTCCTGGAATTGCACTGCCGAGAGCTGTGGATGATTTTTCTCACATTTTGGCACATTCAAACACTAAAGAAAGACGGTACTTGATGGAATAATTCGTTTTGCATCGAAAATATGACGAAGATATTATTACATCTGGtgcatttgatgttattttttcATTCCGGAATCGGGGAAGTTTTATCAGAGGAGCCATTCGAAATTACGCAGCAGGACAGCGATATCCACGAAACTACCGATGGCACCTCCTCGCGCGAAAGCGCACGGTGGGACATGGTCTCCATCAATATGTTTAAAGTCTATGAAAAGTACAGTAAGGAACCACAACGCCATCGAGACGAAAATACCGTCAGAAGTTTTAAGGCTATTCCAGGAGTCTCCAAGAACAGTGTGTGGTTCCATTTCAACCTGTCGTCCATCCAGGAGTCGGAGGACATCCTGTCCGCCACATTCCACTTCCTGGACCAGCGTCCCCGCCACCGACCCTGGATCTGCCGGCGCTCCCGAAGCGCTTCCTGTCGCCTTCAGTGGCATCCCCCATCCCAGCTCCTCTTCCGAGGAACGTCCCCAAACTCTGCCTTTGCCTCCCTGCTGGGCAACGTCACCCTGCCCCCTCCCAGGAGAGGGTCCTGGCAGACAAGTGATGTCTCCGCTGTAGTCAAAGAGGCCAGCATCCTGGGAGTCTTCCTCATTACCGCTGAGTTTGACTTCGGGATGAGGCCCCAGAGGAACCAGGAACGCCTTTCTCCAGCCATCCTACCGTACGTCCTGGCGTATGCCAACGACATGGCCATATCTGAGCCCAACAGTGTGGCCATGACCCTGCAGAGGTACGGGCCTTTCCCTTCGGGCGAGGAGCCCACCCGGTCATCCAACGAATCTCCTCCAGCCTCTAGGCTGAAAAGAGAAGCATTGTCCCCCCTGGACCAAATACTGGACAATGACCTGCCTGAGGTCCAGTTCAACACCCTGAAGAGCCATGAGCTATGGGAGAGCACTTATTTGGTTCCCAAGATCAAGCCCTCAATGAAAGATGGGCAAAAGCATGGCCAGGAGAGCAGTGAGGGGTTGAATAAGCCCCAGGTGCTGAGCTTTGATGAGAGGACGATGAAGAAGGCTCGCAGGAGACAGTGGAGTGAACCCAGGGTCTGCGCCCGACGCTACCTGAGAGTGGATTTTGCAGACATCGGCTGGAGCGAGTGGGTGCTAGCCCCGAAAGCCTTTGATGCCTACTACTGTGCAGGCACCTGCGGATTTCCTATTCCTAAGGTTGCCCGGCCCTCGAACCACGCCACCATCCAAAGCATTGTGAGGGCGGTGGGAATCGTTCCCGGCATTCCGGAGCCCTGCTGTGTTCCGGACAGGATGAGCTCTCTGAGTGTTCTCTTCCTGGACCCCAGCCGGAACATGGTGTTGAAGGTTTACCCCAACATGTCTGTGGAGACCTGCGCCTGCCAGTAGAACCACCCGGAAGGAGCCTCAATGCATAATGCATGAGCCAGAGTACAATGAATCAGACAGAGTGGAGCAGAAGAGACATTCAGTCAGTACAGTAAAAAAGACAGAAATCTTTGGATGAGGCTGCAATGGATAAACCCACCATGGAGGGAGATCTGGATTATAGATAAGAGTTTCTGGATTATAGATAAGGGTTTCTGGATTATAGATAAGGGTTTCTGGATTATAGATAAGGGTTTCTGGATTATAGATAAGGGTGGCGAGATGCAGAGAACGCCGTGTCTGACCATCAGATTAGTGTGATTCACACAGACATTTCCTTGTCATTCAGCAGCTCAACTGTAGTTGAATTTGGGCCTGTATCACTGTCAGTTCCAAGTCTTCAGCCATCCAGAGCTCTTGATGTATACACGGATTCCAAAGTAACTCAAATGATGGACCCTATTGCCATGTACTGGACttcggtggaggctggtgggagtagCTACAGGAGGGCGGGCTCCTTGCAATGGCTTGAATGGAATAGATGGAATgctatcaaacacatggaaacgaCATGTACGACTCAGTTCCATTTACTCAGCCATTGCAATGAGCCCCtactcctatagctcctcccaccagcctccactgctgcaCTTAGACTATTGGACTCAGGTGAGCTTTAGATGTGATGTCTTCGTACGGTACAACACTCAAAAGTGGAACCTCTGTAAATAATAATGTAACTAATACAACTAAATAAGACTTATTTCTGTAAATAATTGCTGGGATCTTAAACTATGTTTTGCCTGTAGTGTTCACTAGTTGTGCAGTTTGAATTAATCTGTCAACATAAATGGTTAATACATGAGTGAATGTACTGTTATAATAAATAATCCCATGTTGTTTTCTGACATGTCATGTTTGCATAAATTTGAATCAGGAAtccattgtcgtcattttcagCGAAGAAAATGGAGATAGACAGCACATTCCTGCCACCTGCTGTTTTGAAATAGAAAATAGTTTTCAAAAAATGGCCATTTGAAGAGGTAGACCTGATATTGATTGTTTTGATCTTATTGACGGAAAGATCGGGAGAGCTTAATTACTTATAGACCACTAGTGCAAAGTCATTACATTCAAAATTGTCAGCATCAGACTGTAGTTGATTAACGTCAAACTACCACAAAAGTCTTGAGAATATTGTGCCATGTAATTTCTATTCCAACATTGTGAATTGTGCATTTATCTTTTGTTTAGGCTTTGTCTGGTTTTGATCATGTGTGCTTTAATTGCCCAAATATGGCCTAGATTGACTCAAAACTTAAATGGAAATAAACTGAATGCTCTATAAAGTGGAGTACATGAATAATGAGAACCCTGGGAGATTGGTTGGGGTTGTTTTATTTTATGATGACCTTGTCCTGAGTCGtcataggctgcgtttacacaggctgcccaattctgatctttttttcacttgttggtcttttgaccaatcagatcagcactGAAAAAGATCGGATGTGAAAAactctgatgtgattggtcaaaaaaacAATCAGTGGAAAAAAAGAGCAtcctacatatttacagtattaGCCAAGCAGCTAATATTAGAATTACAGGAATGTTTAGGGAATAGGAATGCGTTACTCATTTCAGACTCAAATAAAGAAAGTACCTTAATCACCAAA

Function

NR:

description
growth/differentiation factor 10-like

GO: NA

KEGG:

id description
K22674 GDF10, BMP3B; growth differentiation factor 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564888.2 True 4043 mRNA 0.45 3 15373276 15379477

Neighbor

gene id symbol gene type direction distance location
LOC110491436 LOC106579001 coding downstream 821 15368988 ~ 15372455 (-)
LOC110491435 LOC106578999 coding downstream 6746 15358308 ~ 15366530 (-)
LOC110491434 LOC106578998 coding downstream 22432 15322126 ~ 15350844 (-)
LOC110491431 LOC106578995 coding downstream 80947 15274806 ~ 15292329 (-)
vps35l NA coding downstream 114749 15255399 ~ 15258527 (-)
LOC110492840 LOC106579002 coding upstream 59267 15435835 ~ 15462173 (-)
LOC110491439 LOC106579003 coding upstream 104902 15484379 ~ 15519287 (-)
LOC110491441 LOC106579048 coding upstream 143774 15523251 ~ 15525411 (-)
LOC110491442 LOC106579006 coding upstream 156531 15536008 ~ 15550905 (-)
LOC110491444 LOC106579050 coding upstream 217037 15596514 ~ 15599354 (-)
G1345304 NA non-coding downstream 64646 15256702 ~ 15308630 (-)
G1345287 NA non-coding downstream 137154 15234285 ~ 15236122 (-)
G1345285 NA non-coding downstream 139465 15233076 ~ 15233811 (-)
G1345284 NA non-coding downstream 147773 15225277 ~ 15225503 (-)
G1345223 NA non-coding downstream 148730 15209845 ~ 15224546 (-)
G1345357 NA non-coding upstream 3780 15383257 ~ 15383714 (-)
G1345358 NA non-coding upstream 11873 15391350 ~ 15393469 (-)
G1345359 NA non-coding upstream 28286 15407763 ~ 15408045 (-)
G1345360 NA non-coding upstream 28890 15408367 ~ 15408587 (-)
G1345363 NA non-coding upstream 31452 15410929 ~ 15411274 (-)
G1345259 NA other downstream 119706 15251377 ~ 15253570 (-)
G1343452 LOC106578962 other downstream 1739098 13585136 ~ 13634178 (-)
G1343278 NA other downstream 2121608 13251434 ~ 13251668 (-)
G1342941 NA other downstream 2673108 12698986 ~ 12700168 (-)
G1341480 LOC106578921 other downstream 3353762 11946567 ~ 12097768 (-)
G1345561 NA other upstream 319508 15698985 ~ 15699263 (-)
G1347067 NA other upstream 1545045 16924522 ~ 16929432 (-)
G1347343 NA other upstream 1815853 17195330 ~ 17196129 (-)
LOC110491477 psme3 other upstream 2009908 17389099 ~ 17394265 (-)
prr15lb atd4b other upstream 3038138 18417572 ~ 18423242 (-)

Expression


Co-expression Network