XLOC_032323 (si:dkey-92f12.2)


Basic Information

Item Value
gene id XLOC_032323
gene name si:dkey-92f12.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 48041759 ~ 48058745 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00063099
CTCCATCTAAAGTTAAGAAAAACAACAATAGAAACACACAATGACCTTATCGCTAGGTAAAACGACTATATGAATTCTGCGATTGAGTGAAACGCAGCTTTTGAACGTAATGTCCACAAGATGGCGCAGGCCAGCAGGACAGTAGCCGTTGCTTTCTAGTCTACATCATCTTTCTATAAACAACCCTAAACGACGACGAGAGGTGGAGCCGCGGAGCTGACAACTGTCAAAAGACCCTTCCTGATAAGAAGAGCTCTTCTTCCGTCCTCAAAGCATCCTGTCGTAGCGCTTTTGAATTAGCTATAAAGCCGCGTAACCGAAGGGAGTAACGTATTACGCATCTCGTGAGTATCACCGCTCTTTTCTTCGCTACCCAGTCATTGTGGAGCCGTTTCGGATGAACGGATCGCGTTTTGACTATAGATTTTGACAAGCTGCATGTCTTCCTGGAGACCCGCTAAGAAGAGATGTCAAGACGAAGCACAAGATCAGTGACCAAACCGACGTCCTTTCCTGACGATGACGCTGCCAGCACCAGTTCCACTGGATCCACTGGCCACATCTCTTACAAAGAGAGTCCAACCAGGATTTTTCAGAAGAGGACCAGCCGCAAGGGCACTGGCAGCGTTTCACGCAATTCAAGTCGTGCGAGCAGCGTGAGTCTAATACTGCCACCGCGCATCGACTTCAACCCCACTGAGAATGAGAATGGCATTCCTACTCAAGGATTTTCCTCTGGATATTCCTCAGCTGAGGATCATTATGAACAACCCATAAAGTCAAACCCTAGTTCTACCCAGTCTGCTGCTGAACCAGGCTTTGGCGTGTGGGACGTGTTTCAATCTCCAGCTCAAGCTCTGGTTCTGCTGTACTGGTGGCTGGGCACTGCATGGTACAGCCTCACCTCTCGACTGTCTTTCATCAACGTTTTTCTGCTCAGCCGATGCACAGCTGATATGAAAAAAGCGGTCCTGCTGGTCCTCCTCCTTATCTTTCTCATTTTTGGGATATGGTACTGGTTCCCGTTTTCGTCTCGTCCTGCAccccatgttgttgttgttaccagCACTCCCCCTGTTAAACACACAGATAGACctgtaaaagcagtttttgatGATCATCTCCAGCATGCCAGTCTGTCTAACTTGAGGGACGAGATCGCCAACTTGCACAAACGAGAGGCAAACCTCATGAGAGACATTGAACTGCTGAAGGAAGAGAGTGTGAGACAAAAAGCCAAATCTGAGATGATGCAAACCGATGTGAGGACTATGAATGATCACATGAGGAACGCTGAATCTGAACGTGGTCAGCAGATCTCTGAGCTGAAGTCCAGCATCTCAAACCTTCATTCAACCCAAGACCTCCTTACGAGAAGAGTCGATGCACTTGAAGCTCATAACAACAATCTGAGAGCAGAGCTGTCTGATTGGCTAATAAAACACCTGAAAGATCCAAGCTCACTGGATTCAAGTATAGTGCTGCGCCCGGAGCTGCAGAGGGCGCTACAGGATCTGGAGAAGCAGATACTAGAGAAACTAGCACATGAGAAAGGGAGCAGCAGAGATGTCTGGAGGACTGTTGGAGAGACACTGCAGCAGGAAGGAGCCGGAGCCGCTACTATACAAGATGTGAAAGAAATCGTCCACAGGGCTATTAGTCTGTACAGAGCGGATGGGATTGGATTGGCAGACTATGCTTTGGAATCTTCAGgtgCCAGTGTGTTAAACACTCGTTGTTCAGAGACGTATAAGACCAGGTCTGCATGTCTCAGTTTATTCGGTATTCCTCTGTGGTATCACTCAGAAAGCCCTCGTACAGTTATACAGcCGGAGCTGTATCCCGGGAAGTGTTGGGCTTTCCGAGGCTCTCAGGGTTTTCTGGTGATCTCCTTGTCTTATCCCGTTGCGATCACGCATGTCACACTTGAACACATTCCCAAAGATCTGTCACCCACTGGACGCCTGGACAGCGCGCCCAAGGACTTTTCTGTCTACGGCGTGTCTAATGAGACTGAAGATGGAAAGCTGCTTGGGACATTTATTTATGACCAGGATGGAGAACCCATTCAGACTTTTAAACTTCCGGAGGTGTCAGACGTCTACAGTATGGTGGAGCTGAGAGTTCTGAGTAACTGGGGTCACCTGGAGTACACCTGCGTTTACCGCTTCAGAGTCCACGGAGAACCAGCACTCGCCTGACACCattcagaaaagaaaaatcaacCCCAAATGCACTGGACTCCAACTGCTTCCTAATGTACGACTACCAAAAAAACGCACATGAATGTTTGACTGATATCAGATTGTTTTGCCCTgtccaaatatatatttaaactccTCAAATATTGACTTTCAGGCAAGTACTGATAAGAATTgcttttatatacttttatatattaatGAAATGTGTGGATTTTGAGTTTGAGTTGGATGAAGCGTtgtgatttatttaattgtacGTGTACAGGACAGGCTGATGTTGTGTAGTTGTTAAAGCCAAATGAAGGACAAAACGTGTTGTGCTTTGCTAGAATGGACATGCAGCAGCAGCCTTTGTGTTGTTTAGCTCTGCTTCTACGTTAGTCGTACGCTCAGTATTCTGTTTTGTAATAATAGATGGTTCTGGAATGCGTTTCAGAAGCTCATAGTAGTTTGCTGTGTCCTCCGAGCAGCAGATTTGTTTGCActcattttgttattttctgCTTGAGGAGAACGGATGGAGAGTGTCTCCTCTGCGGGACGGGGGAGTCTGGGGGCAAACTCAGGTGTTTGGGTTTTAAACCAAAGTGCtcttgtgtgtatatttgtgcttGATGATGCAGCTCTCCGGCGCACATGGAAAACTCCTCCGAGGTATAAATATATGCATTgatttcttgctttttttttggCGAAGCTgcaaagggacagttcacccagaagTTACAATGttctatttttataatataacacCCAGTGTTTCCTGCCCTTACCATGG
>TCONS_00063100
GATAAGAAGAGCTCTTCTTCCGTCCTCAAAGCATCCTGTCGTAGCGCTTTTGAATTAGCTATAAAGCCGCGTAACCGAAGGGAGTAACGTATTACGCATCTCGTGAGTATCACCGCTCTTTTCTTCGCTACCCAGTCATTGTGGAGCCGTTTCGGATGAACGGATCGCGTTTTGACTATAGATTTTGACAAGCTGCATGTCTTCCTGGAGACCCGCTAAGAAGAGATGTCAAGACGAAGCACAAGATCAGTGACCAAACCGACGTCCTTTCCTGACGATGACGCTGCCAGCACCAGTTCCACTGGATCCACTGGCCACATCTCTTACAAAGAGAGTCCAACCAGGTGCGTTTGTACATGCTGGAGCCCTCAGTGTATTGTGTACATAGTTTGAATGTTCATTTAAAGTAGCCATACATGTTGATGCATGCTTTCCTGTAGGATTTTTCAGAAGAGGACCAGCCGCAAGGGCACTGGCAGCGTTTCACGCAATTCAAGTCGTGCGAGCAGCGTGAGTCTAATACTGCCACCGCGCATCGACTTCAACCCCACTGAGAATGAGAATG

Function

symbol description
si:dkey-92f12.2 Predicted to enable protein-membrane adaptor activity. Predicted to be involved in nuclear envelope organization. Predicted to be located in membrane. Predicted to be integral component of nuclear inner membrane. Predicted to be part of meiotic nuclear membrane microtubule tethering complex. Predicted to be active in nuclear envelope. Orthologous to human SUN2 (Sad1 and UNC84 domain containing 2).

GO:

id name namespace
GO:0006998 nuclear envelope organization biological_process
GO:0034993 meiotic nuclear membrane microtubule tethering complex cellular_component
GO:0005635 nuclear envelope cellular_component
GO:0005639 integral component of nuclear inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043495 protein-membrane adaptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-379 Predicted to enable protein-membrane adaptor activity. Predicted to be involved in nuclear envelope organization. Predicted to be located in membrane. Predicted to be integral component of nuclear inner membrane. Predicted to be part of meiotic nuclear membrane microtubule tethering complex. Predicted to be active in nuclear envelope. Orthologous to human SUN2 (Sad1 and UNC84 domain containing 2).

Ensembl:

ensembl_id ENSDARG00000086490

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00063099 False 2982 mRNA 0.46 18 48041759 48058745
TCONS_00063100 True 565 lncRNA 0.49 2 48042001 48045816

Neighbor

gene id symbol gene type direction distance location
XLOC_032322 CU694362.1 coding upstream 66745 47974879 ~ 47975014 (+)
XLOC_032321 padi2 coding upstream 175901 47843760 ~ 47865858 (+)
XLOC_032320 NA coding upstream 565979 47465768 ~ 47475780 (+)
XLOC_032319 si:ch211-286o17.1 coding upstream 579346 47424266 ~ 47462413 (+)
XLOC_032318 CABZ01055225.1 coding upstream 763502 47278139 ~ 47278257 (+)
XLOC_032324 NA coding downstream 6131 48064876 ~ 48066888 (+)
XLOC_032325 phc2b coding downstream 96209 48154954 ~ 48199276 (+)
XLOC_032326 cttnbp2nla coding downstream 147790 48206535 ~ 48242713 (+)
XLOC_032327 wnt2ba coding downstream 194704 48253449 ~ 48271687 (+)
XLOC_032328 mov10a coding downstream 289670 48348415 ~ 48376245 (+)
XLOC_032317 NA non-coding upstream 1059887 46980117 ~ 46981872 (+)
XLOC_032315 NA non-coding upstream 1066512 46770695 ~ 46975247 (+)
XLOC_032329 CU137649.2 non-coding downstream 546078 48604823 ~ 48604937 (+)
XLOC_032331 NA non-coding downstream 661836 48720581 ~ 48917595 (+)
XLOC_032332 NA non-coding downstream 861821 48920566 ~ 48923357 (+)
XLOC_032337 BX005150.1 non-coding downstream 1063385 49122130 ~ 49122255 (+)

Expression


Co-expression Network