lmf1 (lmf1)


Basic Information

Item Value
gene id lmf1
gene name lmf1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 16653966 ~ 16681564 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564922.2
TTTGGGGAATCCTGACTCCACCCTGCATAGTTGGTGGCGGGATGCACTTTCAATTGTGTGATCGCCAatataccatagaagaagaaggCCCACCAATCATACGATTTTGCAAGACAAATCTGCTGTTCAAGGGTGTTAGTCTACTGTACGTAATTTTTCGAAAATTTTACAGACGTTCAAATCATCTCCCTTAGCGGGTACAGCACTACCACTATGCGATATGCATTCCACGGTAAGCATGTGCAATGCGCAACGCACGGATTTTTAAAAACTCAGACGCTACGTTTCTAGACACTCTTGAACGAGCCCTCTGATCACGTGCTTTTTAGAGCGTCAACCAAAATGGCGAGTCACAGTGAGAGTTCTGAAAGCACTTTGAGAAAAAGACGCGTCGAAACAAAGAAGACAACAACGACACATTCAGATGACAACACCCCAAATAATGAAGAGGACACTTGCAAAGCAAAGAAGCAAGAATTGGTTACATTGCAAACCGGGACTTACTGGCTCACTCGAATTGTGCTTCTACGTTCCATTGCTTTCATCTACTTCATTGCATTCACTGTTGCCTACAACCAGAATAAACAGCTGATAGGAGAGCGAGGCCTCTTGCCCTGTAAGGATTACCTTCTCAGTGTGAAGCGCTATGTGGGGGGAAAGATCGATATGTCTGCCTTCGCCTACACTCCCTCTATCCTGTGGTTCCTGGACTGGACGGACATGGATGCCAACCTGGATGGCATTGCCCTGGTGGGGATGGCGCTGTCAGGCTTTGTGTTGCTGACTGGCACTGCCAACATGATCATCATGGCCATGCTGTGGGTGCTCTACCATTCTCTCGTCAGTGTGGGGCAGATCTGGTATTCGTTTGgTTGGGAAAGTCAGTTGTTGGAGACAGGCTTCTTGGGGAtcttcctgtgtcctgtgtggAGTCTGTCCCAGGTGCCCCCTCGCTGCCCCCCCTCGCTAATCTCCATCTGGACCTTCCGCTGGCTCATCGTTCGCATCATGCTGGGCGctGGGCTGATAAAGATCAGAGGGGACCGCTGCTGGAGGGACCTGACGTGCATGGACTACCACTACGAGACTCAGCCGGTGCCAAACCCCATGTCATACTATATGCACCAATCCCCATGGTGGTTCCATCGCTTCGAGGTTCTGTCCAATCACTTCATCGAGCTCATCGTCCCTCTCTTCACCTTCCTGGGGCGACGCATGTGCATGGTCAACGGGACGCTGCAGATAGTGTTCCAGGTGACTCTGATAGTGAGTGGGAACCTGAGCTTCCTCAATTGGCTGACCATAATTCCCAGTTTGGCCTGTTTTGATGATGCCTCTCTGGGGTTCCTGTTCTCGTCTGGCCGAGGGGCCAAGCAAGCCGTACTGAACCTCCAGGCTGAGGAGGCAGCAGGATGGACCCCCAAACCCACCAGGGGTATGCTTTTTCGTCGAGTGGTGAATGTGGCTCTGGGCGTTCTGATTGGCTACCTGAGCGTTCCTGTAGTGCTGAACCTGCTGAGCTCCAAACAGGTGATGAACACGTCTTTTGACCCGCTCCGCATCGTCAACACCTACGGGGCCTTCGGCAGTATCACTAAGGAGCGGACTGAGGTGATTCTGCAGGGTACTATGAATGAGGACCCTAAGGACCCAGAGGCTGTGTGGGAGGAGTACCAGTTCCTGTGTAAGCCAGGGGAGCTGACCCGACGCCCCTGCCTAATTTCCCCCTACCACTACAGGCTCGACTGGCTCATGTGGTTCGCTGCCTTCCAGacctATGAGCAGAGTGAGTGGGTGATCCACATAGCAGGCAGACTGTTAGCCAACGACACATCAATCCTTTCACTGATGGAATACAACCCCTTCCAGGGCAGAGACAACCCCAGGTGGGTCCGAGGAGAACACTTCAAGTATAGGTTCACCCTGCCTGGCAGTGGTCCCCAGGGGAAATGGTGGGTGAGGAAACGTATTGGAGCCTACTTCCCCGCTGTGGATCTGGTCGCTCTCAGAGGATACTTTAAGTCCCGGAATTGGCCCCATCCTGACCTTTGACCTACCGTATGACCAATCACACTAATGTATTCAATGAGCGATGGATGCCTGAGACACCGAGGTATCTCTCCCCCTTATAATTTGGGATCAAATATGCTCTGAAAGCAAACATGTTGACATGAGTACCCTGATATCGGGGAATTTGTGCCATTCTGAAAAAAtggttagattttttttgttcctCTATGTTGCCTGTCTTCAGAATGTCATGTTGCCATCTGCTGTTTGCACTAAAGAATGACCAATCCTTCCTGTGAAAAGGGATATGCCACTCTGCCACAATAGGAGAGTTAAGGGGATGACAGTCCATGTTGGGCTCACATCGCCAGACAGACTGTACACACATTGTGTCTTTTGAAAATAAAAGGTCTATTTTGGAACAAA

Function

symbol description
lmf1 Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in familial lipase maturation factor 1 deficiency. Orthologous to human LMF1 (lipase maturation factor 1).

NR:

description
lipase maturation factor 1

GO: NA

KEGG:

id description
K23555 LMF1; lipase maturation factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564922.2 True 2436 mRNA 0.51 11 16653966 16681564

Neighbor

gene id symbol gene type direction distance location
LOC110491454 LOC106579017 coding downstream 18414 16499126 ~ 16635552 (-)
LOC118939491 NA coding downstream 156625 16495588 ~ 16497341 (-)
LOC118939490 NA coding downstream 178634 16461836 ~ 16475332 (-)
pemt pemt coding downstream 218262 16354364 ~ 16435704 (-)
rasd1 LOC106579016 coding downstream 309660 16342156 ~ 16344306 (-)
LOC110491459 LOC106579021 coding upstream 13650 16695214 ~ 16724979 (-)
LOC110491457 LOC103024569 coding upstream 46939 16728503 ~ 16733104 (-)
LOC110491465 LOC106579029 coding upstream 476750 17158314 ~ 17212112 (-)
LOC110491470 LOC106579340 coding upstream 624494 17306058 ~ 17352385 (-)
LOC110491471 LOC106579339 coding upstream 674831 17356395 ~ 17359630 (-)
G1346904 NA non-coding downstream 73480 16579183 ~ 16580486 (-)
G1346897 NA non-coding downstream 94487 16557797 ~ 16559479 (-)
G1346487 NA non-coding downstream 181588 16472130 ~ 16472378 (-)
G1346479 NA non-coding downstream 189882 16463812 ~ 16464084 (-)
G1346475 NA non-coding downstream 195062 16458648 ~ 16458904 (-)
G1346971 NA non-coding upstream 12420 16693984 ~ 16695101 (-)
G1347109 NA non-coding upstream 206938 16888502 ~ 16895370 (-)
G1347067 NA non-coding upstream 242958 16924522 ~ 16929432 (-)
G1347148 NA non-coding upstream 267462 16949026 ~ 16949346 (-)
G1347183 NA non-coding upstream 308408 16989972 ~ 17046500 (-)
G1345561 NA other downstream 954703 15698985 ~ 15699263 (-)
G1345259 NA other downstream 1400396 15251377 ~ 15253570 (-)
G1343452 LOC106578962 other downstream 3019788 13585136 ~ 13634178 (-)
G1343278 NA other downstream 3402298 13251434 ~ 13251668 (-)
G1342941 NA other downstream 3953798 12698986 ~ 12700168 (-)
G1347343 NA other upstream 513766 17195330 ~ 17196129 (-)
LOC110491477 psme3 other upstream 707821 17389099 ~ 17394265 (-)
prr15lb atd4b other upstream 1736051 18417572 ~ 18423242 (-)
G1349366 NA other upstream 1952467 18634031 ~ 18634405 (-)

Expression


Co-expression Network