LOC110491459 (LOC106579021)


Basic Information

Item Value
gene id LOC110491459
gene name LOC106579021
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 16695214 ~ 16724979 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564926.2
TCAACCCATAACATCGATTACGTTTTCGACAATCTGTTAACTTTTAAAGAGACAGAAACAAAGTTTAGACATTCTGTGACAGAAATAAGTAAAAGTACGAGCCAGCTACAGTCTGCTGTCAAATCTTTAACAGTGAAATGGTTTATTTTGTCTAAGGTGCACAATATAGTCCTCATAAAAACGTCTACATGTTGGCTGTCACCGTCAGAAAGAAAAATTACACAGGTAGTCAGAAATTGTTTCATGATCATCATACCACTGGAGGTCTCACTGCAACTGCAGAAGGGATGAGTCTGGGTAAAAGGAGGGGATGACAGACTTGAGATTATGCAGTTAGCAAGACTTCGTAGCCTAATAGAGCTGtagtcaggagagagagacttGCCAAACCTTCAAATCATCCAAGCTGATCTATCATAGGCTATTAATTAttagcatttttttaaattttgagTAAAGTACAAGGTCACAATTTGATTGTTGCTTTATCCTAGTTAACGTGCTTTGTATTGAAGTCTTTCGGAATTGGGTGGAGATCAAACGGTGACTATGGCCTCGGAGTCGGAGACGAATAAACGGCTATTGCTAGATGTCCTGACCAGACCTGGAAACGATGCATGTGCGGATTGTGGCAATGCAGaGCCAGACTGGGCGTCGGTGActttgggtgtgtttgtgtgccaggGCTGCTCTCTCCTCCACAGAGGCATCCCCCACATCAGCAGGGTCAAGTCCGTCCAGCAGGAGTCATGGGAGGCCTCAGAGGTGGAGCTAATGGCTGCCATGGGTAACGAAGCAGCCAAAGCTAAGTACGAACAGAAGGTTCCAGCATTCTACTACAGACCCAAACACACAGACTGCAAGCTACTGCGGGAGCAATGGATCCGAGCCAGGTACGAGAGGAACGAGTTTGAGTTCATCGAGAAACAGGAGCCTTACTCTGCAGGGTACAGAGAGGGGTTTCTATGGAAACGGGGCCGAGACAACGGTCAGTTCCTCAGTCGGAAATTCATTCTGTCGGAACGAGAGGGGGCGCTCAAGTACTTCAGCAAGCAGGAGGCGCGGGACCCCAAGGCGGTGATGAAGATTGAAACTCTCAACGCTACGTTCCAACCGGCTAAGATAGGCAACCCCTACGGCCTGCAGATCACCTACCTTAGAGACAACAGCACCAGGAACATCTTTGTGTACCACAGCGACTCTAAGGAAATGGTGGACTGGTTCAACGCTATCAGAGCTGCCAGGTTTCATTACCTTCAGGTGGCCTTCCCTGGAGCCAGTGACGAGGAGcTGGTGCCCAAACTGACGCGTAGCTTCATGAAGGAGGGCTTCATGGAGAAAACAGGCCCAAAACACACAGAGGGCTTTAAGAAGAGGTGGTTCACCATGGATGACAGGAGACTCATGTACTTCAAAGATCCTCTGgaTGCCTATGCGAGGGGAGAGGTTTTCATCGGCAGTAAGGAGAACAGCTACACCGTGCTCCCGGGCCTTCCCCCTTCCACCCAGGGCTACCACTGGAACCATGGCATCACCATAGTAACACCAGACAGGAAGTTCCTGTTTGCCTGCGAGACGGAGGCGGAGCAGAAAGACTGGATCACTGCTTTCCAGAGGGTTATCAACAGACCCATGAGACCACAGGAGTATGCAGTGGAGGCCCACTTCAAACACAAGCCCTGAGACTGGAGCTAGAGCTGTCGGTCTACTGGACTAAGACCAGAACAGACAGGATTTCTCTACAGAGACCCCAGAATAAGTCTATGGGGTTCTAGTGTACCTTTACAGAGGGAGTAAGATGGTAGACATGGAAGAAATGCATCCGAGAGGAGAGAGGTATCAATAGAAAACACtttcttctccacctctcctgaCCTGATGCCCAAAcctggggttagaggtcagggggtttgagaggagagaaaaggacacAGAAACATCAACACCCCTGCTGCTGCTCTCCACATCGACCCTCCAAACTGCACCCCCTGCTCTAAGTGTTGTGATCAGCATCCCTTGTTGTATACTAAGGAGTCATGTTCGCCGTGTTTGTTGAGAGCAGTACTGTCATTTTAATTATTGATTTGACACTTTTGATGCCAGTGGATTTATGCAATGTCTCACATTGTTCTGCATAATCTGCACACATTTAACTTTCAAGGTGCTGACAACCTATGCTTCTGTACACGGTTAGGGTTTTACTCATCATGGCAGTTATTTATTTTTGAAATGCAAATGTAAATATTTTGAATCTCAGTGAATGCTGCTTCATGCAACAGGATGGTAAATGTATTTCATATCATACtgtgtacagtaccattcaaatgtttggacacacctactcacttcagtgtatttctttatttttactattttctacattgtagaataatagtgaagacatcaaa
>XM_036946309.1
TCAACCCATAACATCGATTACGTTTTCGACAATCTGTTAACTTTTAAAGAGACAGAAACAAAGTTTAGACATTCTGTGACAGAAATAAGTAAAAGTACGAGCCAGCTACAGTCTGCTGTCAAATCTTTAACAGTGAAATGGTTTATTTTGTCTAAGGTGCACAATATAGTCCTCATAAAAACGTCTACATGTTGGCTGTCACCGTCAGAAAGAAAAATTACACAGGTAGTCAGAAATTGTTTCATGATCATCATACCACTGGAGGTCTCACTGCAACTGCAGAAGGGATGAGTCTGGGTAAAAGGAGGGGATGACAGACTTGAGATTATGCAGTTAGCAAGACTTCGTAGCCTAATAGAGCTGtagtcaggagagagagacttGCCAAACCTTCAAATCATCCAAGCTGATCTATCATAGGCTATTAATTAttagcatttttttaaattttgagTAAAGTACAAGGTCACAATTTGATTGTTGCTTTATCCTAGTTAACGTGCTTTGTATTGAAGTCTTTCGGAATTGGGTGGAGATCAAACGGTGACTATGGCCTCGGAGTCGGAGACGAATAAACGGCTATTGCTAGATGTCCTGACCAGACCTGGAAACGATGCATGTGCGGATTGTGGCAATGCAGaGCCAGACTGGGCGTCGGTGActttgggtgtgtttgtgtgccaggGCTGCTCTCTCCTCCACAGAGGCATCCCCCACATCAGCAGGGTCAAGTCCGTCCAGCAGGAGTCATGGGAGGCCTCAGAGGTGGAGCTAATGGCTGCCATGGGTAACGAAGCAGCCAAAGCTAAGTACGAACAGAAGGTTCCAGCATTCTACTACAGACCCAAACACACAGACTGCAAGCTACTGCGGGAGCAATGGATCCGAGCCAGGTACGAGAGGAACGAGTTTGAGTTCATCGAGAAACAGGAGCCTTACTCTGCAGGGTACAGAGAGGGGTTTCTATGGAAACGGGGCCGAGACAACGGTCAGTTCCTCAGTCGGAAATTCATTCTGTCGGAACGAGAGGGGGCGCTCAAGTACTTCAGCAAGCAGGAGTTTGTGTATCTCCCCCAGGCGCGGGACCCCAAGGCGGTGATGAAGATTGAAACTCTCAACGCTACGTTCCAACCGGCTAAGATAGGCAACCCCTACGGCCTGCAGATCACCTACCTTAGAGACAACAGCACCAGGAACATCTTTGTGTACCACAGCGACTCTAAGGAAATGGTGGACTGGTTCAACGCTATCAGAGCTGCCAGGTTTCATTACCTTCAGGTGGCCTTCCCTGGAGCCAGTGACGAGGAGcTGGTGCCCAAACTGACGCGTAGCTTCATGAAGGAGGGCTTCATGGAGAAAACAGGCCCAAAACACACAGAGGGCTTTAAGAAGAGGTGGTTCACCATGGATGACAGGAGACTCATGTACTTCAAAGATCCTCTGgaTGCCTATGCGAGGGGAGAGGTTTTCATCGGCAGTAAGGAGAACAGCTACACCGTGCTCCCGGGCCTTCCCCCTTCCACCCAGGGCTACCACTGGAACCATGGCATCACCATAGTAACACCAGACAGGAAGTTCCTGTTTGCCTGCGAGACGGAGGCGGAGCAGAAAGACTGGATCACTGCTTTCCAGAGGGTTATCAACAGACCCATGAGACCACAGGAGTATGCAGTGGAGGCCCACTTCAAACACAAGCCCTGAGACTGGAGCTAGAGCTGTCGGTCTACTGGACTAAGACCAGAACAGACAGGATTTCTCTACAGAGACCCCAGAATAAGTCTATGGGGTTCTAGTGTACCTTTACAGAGGGAGTAAGATGGTAGACATGGAAGAAATGCATCCGAGAGGAGAGAGGTATCAATAGAAAACACtttcttctccacctctcctgaCCTGATGCCCAAAcctggggttagaggtcagggggtttgagaggagagaaaaggacacAGAAACATCAACACCCCTGCTGCTGCTCTCCACATCGACCCTCCAAACTGCACCCCCTGCTCTAAGTGTTGTGATCAGCATCCCTTGTTGTATACTAAGGAGTCATGTTCGCCGTGTTTGTTGAGAGCAGTACTGTCATTTTAATTATTGATTTGACACTTTTGATGCCAGTGGATTTATGCAATGTCTCACATTGTTCTGCATAATCTGCACACATTTAACTTTCAAGGTGCTGACAACCTATGCTTCTGTACACGGTTAGGGTTTTACTCATCATGGCAGTTATTTATTTTTGAAATGCAAATGTAAATATTTTGAATCTCAGTGAATGCTGCTTCATGCAACAGGATGGTAAATGTATTTCATATCATACtgtgtacagtaccattcaaatgtttggacacacctactcacttcagtgtatttctttatttttactattttctacattgtagaataatagtgaagacatcaaa

Function

NR:

description
PREDICTED: arf-GAP with dual PH domain-containing protein 1-like isoform X1

GO: NA

KEGG:

id description
K23781 ADAP, CENTA; Arf-GAP with dual PH domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564926.2 False 2408 mRNA 0.47 10 16695214 16724979
XM_036946309.1 True 2426 mRNA 0.47 10 16695214 16724979

Neighbor

gene id symbol gene type direction distance location
lmf1 lmf1 coding downstream 13650 16653966 ~ 16681564 (-)
LOC110491454 LOC106579017 coding downstream 59662 16499126 ~ 16635552 (-)
LOC118939491 NA coding downstream 197873 16495588 ~ 16497341 (-)
LOC118939490 NA coding downstream 219882 16461836 ~ 16475332 (-)
pemt pemt coding downstream 259510 16354364 ~ 16435704 (-)
LOC110491457 LOC103024569 coding upstream 3524 16728503 ~ 16733104 (-)
LOC110491465 LOC106579029 coding upstream 433335 17158314 ~ 17212112 (-)
LOC110491470 LOC106579340 coding upstream 581079 17306058 ~ 17352385 (-)
LOC110491471 LOC106579339 coding upstream 631416 17356395 ~ 17359630 (-)
LOC110491474 LOC106579337 coding upstream 651478 17376457 ~ 17380710 (-)
G1346971 NA non-coding downstream 113 16693984 ~ 16695101 (-)
G1346904 NA non-coding downstream 114728 16579183 ~ 16580486 (-)
G1346897 NA non-coding downstream 135735 16557797 ~ 16559479 (-)
G1346487 NA non-coding downstream 222836 16472130 ~ 16472378 (-)
G1346479 NA non-coding downstream 231130 16463812 ~ 16464084 (-)
G1347109 NA non-coding upstream 163523 16888502 ~ 16895370 (-)
G1347067 NA non-coding upstream 199543 16924522 ~ 16929432 (-)
G1347148 NA non-coding upstream 224047 16949026 ~ 16949346 (-)
G1347183 NA non-coding upstream 264993 16989972 ~ 17046500 (-)
G1347244 NA non-coding upstream 340771 17065750 ~ 17066887 (-)
G1345561 NA other downstream 995951 15698985 ~ 15699263 (-)
G1345259 NA other downstream 1441644 15251377 ~ 15253570 (-)
G1343452 LOC106578962 other downstream 3061036 13585136 ~ 13634178 (-)
G1343278 NA other downstream 3443546 13251434 ~ 13251668 (-)
G1342941 NA other downstream 3995046 12698986 ~ 12700168 (-)
G1347343 NA other upstream 470351 17195330 ~ 17196129 (-)
LOC110491477 psme3 other upstream 664406 17389099 ~ 17394265 (-)
prr15lb atd4b other upstream 1692636 18417572 ~ 18423242 (-)
G1349366 NA other upstream 1909052 18634031 ~ 18634405 (-)

Expression


Co-expression Network