LOC110491477 (psme3)


Basic Information

Item Value
gene id LOC110491477
gene name psme3
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 17389099 ~ 17394265 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946364.1
TTATTTTCCTGTAATATGACAGTTGTTGTTTTTGTACAGGTCGATGTTTTCAGACAACGAATTACTGGGGAGGCGGAGAACCTAGTTGCAAGTTTTTTCCCAAATAAGTTATTGGAACTTGACCATTTTCTCAAGGATCCCATTTTAAACATCTGTGAACTTAAAGAGATACACTCAGAAATCAACTTGACAGTGCCAGACCCCATTCTACTCACAAACCTCCACGATGGACTTGAAGCGCATAATGCCAAAAAGAGGAAAATGGAAGATGGTACTGGGGAGGACAAGGTGGCTGGCACCAAGGTCTTTATCATGCCTAGTGGGATGATGAAGAGCAACACCAAGCTGGTGGACTTGATCGAGAAGGTCAAGCCAGAGATCAGGACACTCATAGAGAAATGTAACACGGTAAAAATGTGGGTTCAGTTGCTTATCCCAAGAATAGAAGATGGCAACAACTTTGGGGTTTCAATTCAGGAGGAGACAGTAGCTGAACTCCGAACAGTGGAGGGGGAAGCAGCATCGTACCTCGACCAGATATCTGGATACTACATCACAAGAGCAAAGCTAGTGTCCAAAATAGCAAAATACCCACATGTGGAGGACTACCGGCGCACAGTGACTGAGATTGATGAGAAGAAATACATCAGCCTCAAGGTCATAGTTTCAGAGCTGAGAAATCAATACGTAACGCTACACGACATGATCTTGAAGAACATTGACAAGATCAAGAAGCCTAGGAGCAGCAATGCTGAAGCATTGTACTGAGACTGACCCAGCCACCCCTCCCGTTCCCTTCTTCTGCCAGCTGTCAAAGTAGCGGAAGGACTAGAGCTAGACCATCACTACCAGATCAGTACAATCCAGGAAACCATGGTCCCGGTATCTTTTCGTTTGATTGGTAAAATATGGTCATTGTTTTAAAATCCTTCAAAGAGTATGTTATGAGGTCTCTCGACGAACCGTGAGCAATGGCTCTGGGAAAAGAAcgctatgtattttttattcaaTTAAAACCATTTTGTCCATGCA
>XR_005036456.1
CATGTTGTCTCATGTTGAATACCTCATTTTTAGACAACAATTGTGGCTGACACGTTTAGTCCCAAATTGAGGACAATCGTATTTCTGCCATTTGTGGTTAAAGAAGAATTCACTCCTCAAGGTGGACAATGAACTTAATCTTAAGGTCGATGTTTTCAGACAACGAATTACTGGGGAGGCGGAGAACCTAGTTGCAAGTTTTTTCCCAAATAAGTTATTGGAACTTGACCATTTTCTCAAGGATCCCATTTTAAACATCTGTGAACTTAAAGAGATACACTCAGAAATCAACTTGACAGTGCCAGACCCCATTCTACTCACAAACCTCCACGATGGACTTGAAGCGCATAATGCCAAAAAGAGGAAAATGGAAGATGGTACTGGGGAGGACAAGGTGGCTGGCACCAAGGTCTTTATCATGCCTAGTGGGATGATGAAGAGCAACACCAAGCTGGTGGACTTGATCGAGAAGGTCAAGCCAGAGATCAGGACACTCATAGAGAAATGTAACACGGTAAAAATGTGGGTTCAGTTGCTTATCCCAAGAATAGAAGATGGCAACAACTTTGGGGTTTCAATTCAGGTCTCATCTAAGTGTATGCTACATTGAACCATGGCTCCACCACTGATTTGGTGTCTGCAGGAGGAGACAGTAGCTGAACTCCGAACAGTGGAGGGGGAAGCAGCATCGTACCTCGACCAGATATCTGGATACTACATCACAAGAGCAAAGCTAGTGTCCAAAATAGCAAAATACCCACATGTGGAGGACTACCGGCGCACAGTGACTGAGATTGATGAGAAGAAATACATCAGCCTCAAGGTCATAGTTTCAGAGCTGAGAAATCAATACGTAACGCTACACGACATGATCTTGAAGAACATTGACAAGATCAAGAAGCCTAGGAGCAGCAATGCTGAAGCATTGTACTGAGACTGACCCAGCCACCCCTCCCGTTCCCTTCTTCTGCCAGCTGTCAAAGTAGCGGAAGGACTAGAGCTAGACCATCACTACCAGATCAGTACAATCCAGGAAACCATGGTCCCGGTATCTTTTCGTTTGATTGGTAAAATATGGTCATTGTTTTAAAATCCTTCAAAGAGTATGTTATGAGGTCTCTCGACGAACCGTGAGCAATGGCTCTGGGAAAAGAAcgctatgtattttttattcaaTTAAAACCATTTTGTCCATGCA
>TU1540613
GTTTTTATAacatacgtttaatgctagctagcaccctaccttggctccttgctgcacttgcataacaggtagtcagcctgccacgcagtctcctcatggagtgcaatgtaatcgtccatgatcggtgtccaaaaataccgattgttatgaaaacttgaaatcggccctaattaatccttcattccgattaattggtctaCCTCTAATCAGGACGCACAACTGCAATGGATTTAGACTACTAGAGTCTATATGTATTAAAAGGTGCACCATTTTTATTGTTGTCTGTACCTAAGGTCTCATCTAAGTGTATGCTACATTGAACCATGGCTCCACCACTGATTTGGTGTCTGCAGGAGGAGACAGTAGCTGAACTCCGAACAGTGGAGGGGGAAGCAGCATCGTACCTCGACCAGATATCTGGGTACTAACCTCAACCCGGTCTTTACAATTAGTCTTACTGTGGTAGGCTATGTAACCATCTTGTATCCTGTCTGCCCATAGATACTACATCACAAGAGCAAAGCTAGTGTCCAAAATAGCAAAATACCCACATGTGGAGGACTACCGGCGCACAGTGACTGAGATTGATGAGAAGAAATACATCAGCCTCAAGGTCATAGTTTCAGAGCTGAGAAATCAATACGTAACGCTACACGACATGATCTTGAAGAACATTGACAAGATCAAGAAGCCTAGGAGCAGCAATGCTGAAGCATTGTACTGAGACTGACCCAGCCACCCCTCCCGTTCCCTTCTTCTGCCAGCTGTCAAAGTAGCGGAAGGACTAGAGCTAGACCATCACTACCAGATCAGTACAATCCAGGAAACCATGGTCCCGGTATCTTTTCGTTTGATTGGTAAAATATGGTCATTGTTTTAAAATCCTTCAAAGAGTATGTTATGAGGTCTCTCGACGAACCGTGAGCAATGGCTCTGGGAAAAGAAcgctatgtattttttattcaaTTAAAACCATTTTGTCCATGCATCTCGCTGTCTTTTCTGAAACTTTTGAAATGGTCCAAGACCACTTTTACTGTTTTGTCTACTGCTTTATTGAATGTTCTATGGCGCGATGGGAGACCGTCCTATGTAGGTCACTGCAGAAGTGCTTTTTAGCGGCTGGGTTTTCAATTACCCTGGTGATGTTGGTAACGGCTGACTGACTTTATGCTGAATATTATGGACTCGAATCAGAACAGTTATTTCTGACTGTCGGTAAAATTGTTTAGATTGTTCAATGATAATGAGACATGACATTTGC
>TU1540609
tattgatgattatggttaggtacattcgtgcaaccattgtgcttttttcgcaaatgcacttttgttaaagcatcccccgtttggcaaagttggctgtttttgttaggaataaatagtcttcacacagttcacaacgagccaaacggcccaaactgctgcatataccctgactctgttgcacagaacgcaagagaagtgacacaatttctctagttaaaagaaattcatgttagcaggcaatattaactaaatatgcaggtttaaaaatatatacttgtgtattgattttaagaaaggcgttgatgtttatggttaggtacacattggtgcaacgacataGCTTTTTTTTCCGCGAaagcgcttgttaaatcacccgtttgacgaagtaggctatgattcaatgataaattaacaggcaccgcttCCATTATATgcacgcaggacaagctagataaactagtaatatcatcaaacatgtgtagttaactagtgatttttTTGATTGGTTTTTATAacatacgtttaatgctagctagcaccctaccttggctccttgctgcacttgcataacaggtagtcagcctgccacgcagtctcctcatggagtgcaatgtaatcgtccatgatcggtgtccaaaaataccgattgttatgaaaacttgaaatcggccctaattaatccttcattccgattaattggtctaCCTCTAATCAGGACGCACAACTGCAATGGATTTAGACTACTAGAGTCTATATGTATTAAAAGGTGCACCATTTTTATTGTTGTCTGTACCTAAGGTCTCATCTAAGTGTATGCTACATTGAACCATGGCTCCACCACTGATTTGGTGTCTGCAGGAGGAGACAGTAGCTGAACTCCGAACAGTGGAGGGGGAAGCAGCATCGTACCTCGACCAGATATCTGGGTACTAACCTCAACCCGGTCTTTACAATTAGTCTTACTGTGGTAGGCTATGTAACCATCTTGTATCCTGTCTGCCCATAGATACTACATCACAAGAGCAAAGCTAGTGTCCAAAATAGCAAAATACCCACATGTGGTAAGTGTGATTGCTAACTGCAGGTCTGGTTGGCAAGCTTCTTCCAGACAGAAACCTGTCACTACACTGTGCATTTACTGAGGGTAAAGCAGCATTATGCAAATGTGGATATTGTCCAACCCTAGTATGCATTATTTACATGCACCTACATTACTATTTACCTTaagtctctttctttctctaaacAGGAGGACTACCGGCGCACAGTGACTGAGATTGATGAGAAGAAATACATCAGCCTCAAGGTCATAGTTTCAGAGCTGAGAAATCAATACGTAACGCTACACGACATGATCTTGAAGAACATTGACAAGATCAAGAAGCCTAGGAGCAGCAATGCTGAAGCATTGTACTGAGACTGACCCAGCCACCCCTCCCGTTCCCTTCTTCTGCCAGCTGTCAAAGTAGCGGAAGGACTAGAGCTAGACCATCACTACCAGATCAGTACAATCCAGGAAACCATGGTCCCGGTATCTTTTCGTTTGATTGGTAAAATATGGTCATTGTTTTAAAATCCTTCAAAGAGTATGTTATGAGGTCTCTCGACGAACCGTGAGCAATGGCTCTGGGAAAAGAAcgctatgtattttttattcaaTTAAAACCATTT
>TU1540612
atttctctctataccatttgtatttcatataccttttgactattggatgttcttataggcactttagttttgccagtgtaacagtatagcttccatccctctcctcgcccctacctgggctcgaaccaggaacacatcgacaacagctaccctcgaagcatcgttacccatcgctccacaaaacccgcagcccttgcagagcaaggggaacaactacttcaaggtctcagagcgagtgacgtcaccgattgaaacgctattagcgcgcaccccgctaactagctcgggagttgataggcttgaagtcataaacagctcaatgcttgaagcacagcgaagagctgctggtaaACGcacaaagtgctgtttgaatgaatgcttacgagcctgctgcagcctaccaccgctcagtcagactgctctatcaaatatcaaatcatatacttaattataatataataacaaacACAAATActagccttaggtcattaatatggtcaaatccggaaacgatcatttcgaaaacaaaacgttaattctttcagtgaaatacggaaccgtattacattgcacaaccttaaattttatgtcataattacgtacaattctggcaaattagttcgcaacgagccaggcggcccaaactgttgcattttCCCTGACTcggcgtgcaatgaacgcaagagaagtgacacaatttccccagtttaatattgcctgctaaactggatttcTTTTAAcgaaatatgcaggtttaataaaatatacttctgtgtattgattttaagaaaggtattgatgattatggttaggtacattcgtgcaaccattgtgcttttttcgcaaatgcacttttgttaaagcatcccccgtttggcaaagttggctgtttttgttaggaataaatagtcttcacacagttcacaacgagccaaacggcccaaactgctgcatataccctgactctgttgcacagaacgcaagagaagtgacacaatttctctagttaaaagaaattcatgttagcaggcaatattaactaaatatgcaggtttaaaaatatatacttgtgtattgattttaagaaaggcgttgatgtttatggttaggtacacattggtgcaacgacataGCTTTTTTTTCCGCGAaagcgcttgttaaatcacccgtttgacgaagtaggctatgattcaatgataaattaacaggcaccgcttCCATTATATgcacgcaggacaagctagataaactagtaatatcatcaaacatgtgtagttaactagtgatttttTTGATTGGTTTTTATAacatacgtttaatgctagctagcaccctaccttggctccttgctgcacttgcataacaggtagtcagcctgccacgcagtctcctcatggagtgcaatgtaatcgtccatgatcggtgtccaaaaataccgattgttatgaaaacttgaaatcggccctaattaatccttcattccgattaattggtctaCCTCTAATCAGGACGCACAACTGCAATGGATTTAGACTACTAGAGTCTATATGTATTAAAAGGTGCACCATTTTTATTGTTGTCTGTACCTAAGGTCTCATCTAAGTGTATGCTACATTGAACCATGGCTCCACCACTGATTTGGTGTCTGCAGGAGGAGACAGTAGCTGAACTCCGAACAGTGGAGGGGGAAGCAGCATCGTACCTCGACCAGATATCTGGATACTACATCACAAGAGCAAAGCTAGTGTCCAAAATAGCAAAATACCCACATGTGGAGGACTACCGGCGCACAGTGACTGAGATTGATGAGAAGAAATACATCAGCCTCAAGGTCATAGTTTCAGAGCTGAGAAATCAATACGTAACGCTACACGACATGATCTTGAAGAACATTGACAAGATCAAGAAGCCTAGGAGCAGCAATGCTGAAGCATTGTACTGAGACTGACCCAGCCACCCCTCCCGTTCCCTTCTTCTGCCAGCTGTCAAAGTAGCGGAAGGACTAGAGCTAGACCATCACTACCAGATCAGTACAATCCAGGAAACCATGGTCCCGGTATCTTTTCGTTTGATTGGTAAAATATGGTCATTGTTTTAAAATCCTTCAAAGAGTATGTTATGAGGTCTCTCGACGAACCGTGAGCAATGGCTCTGGGAAAAGAAcgctatgtattttttattcaaTTAAAACCATTT

Function

symbol description
psme3 Predicted to enable endopeptidase activator activity. Predicted to be involved in positive regulation of endopeptidase activity; regulation of G1/S transition of mitotic cell cycle; and regulation of proteasomal protein catabolic process. Predicted to be part of proteasome activator complex. Predicted to be active in cytoplasm and nucleoplasm. Orthologous to human PSME3 (proteasome activator subunit 3).

NR:

description
proteasome activator complex subunit 3-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946364.1 False 1032 mRNA 0.44 10 17389375 17393695
XR_005036456.1 False 1198 mRNA 0.43 11 17389375 17394265
TU1540613 False 1264 lncRNA 0.43 3 17389099 17390656
TU1540609 False 1671 lncRNA 0.41 2 17389385 17391161
TU1540612 True 2196 TUCP 0.41 4 17389385 17391954

Neighbor

gene id symbol gene type direction distance location
LOC110491474 LOC106579337 coding downstream 8665 17376457 ~ 17380710 (-)
LOC110491471 LOC106579339 coding downstream 29745 17356395 ~ 17359630 (-)
LOC110491470 LOC106579340 coding downstream 36990 17306058 ~ 17352385 (-)
LOC110491465 LOC106579029 coding downstream 215441 17158314 ~ 17212112 (-)
LOC110491457 LOC103024569 coding downstream 656271 16728503 ~ 16733104 (-)
LOC110491488 NA coding upstream 153940 17548205 ~ 17569945 (-)
LOC110492844 LOC106589301 coding upstream 277221 17671486 ~ 17682483 (-)
LOC110491480 LOC106589300 coding upstream 290206 17684471 ~ 17694082 (-)
LOC110491482 LOC106579329 coding upstream 319615 17713880 ~ 17868844 (-)
LOC110491487 NA coding upstream 328622 17722887 ~ 17727796 (-)
G1347556 NA non-coding downstream 95740 17287995 ~ 17293635 (-)
G1347345 arf1l non-coding downstream 158667 17207145 ~ 17230708 (-)
G1347609 LOC106579335 non-coding upstream 11280 17405545 ~ 17407873 (-)
G1347807 NA non-coding upstream 181289 17575554 ~ 17575791 (-)
G1347851 NA non-coding upstream 201901 17596166 ~ 17607260 (-)
G1347877 NA non-coding upstream 236367 17630632 ~ 17630937 (-)
G1347343 NA other downstream 193246 17195330 ~ 17196129 (-)
G1347067 NA other downstream 459943 16924522 ~ 16929432 (-)
G1345561 NA other downstream 1690112 15698985 ~ 15699263 (-)
G1345259 NA other downstream 2135805 15251377 ~ 15253570 (-)
G1343452 LOC106578962 other downstream 3755197 13585136 ~ 13634178 (-)
prr15lb atd4b other upstream 1023350 18417572 ~ 18423242 (-)
G1349366 NA other upstream 1239766 18634031 ~ 18634405 (-)
LOC110491541 LOC106579266 other upstream 1926605 19310970 ~ 19325094 (-)
G1349896 NA other upstream 2066776 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 2297427 19691616 ~ 19697840 (-)
G1347357 LOC106579032 non-coding downstream 194372 17186890 ~ 17194727 (-)
G1347348 NA non-coding downstream 228702 17160189 ~ 17160397 (-)

Expression


Co-expression Network