LOC110491488


Basic Information

Item Value
gene id LOC110491488
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 17548205 ~ 17569945 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468843.2
CCCAACGAGGAAAGGCTGTGTGTCGTTAAGCTAGGGAGTGCTTGGAAATACAGGTGGAAGCAGCCTGTACATAGGGGCAGAGGAGGCGCGAACCAAGCAAGGTATGAGAGCCAGAGCCGTTGGATTGCCTGTTGTGACCTGGACTGTTGGACTAACCCCTTTGTGTATCGGACCGGATTGGCTGAGAACCCAAGTGTGAGGATTACCCCTGGGAAAAAGAACAAACAAAGAGAACGGCTTGTGAGAATTGAGACTAGGCCAAATAGGGGATGCAGAGGCAAAGTTCTGATTGACCAACAAGAGTGGGCTGTGGTCAATATGGTTCGGGCAAGAAATGATTTTTGGCTTACAGAAATTCGGCAGCACATCTTGGACAATGACGACATGTTCTACAATGTGGAAGCCATAAGTTTGCTGACTATTGCGCGGATGCTGAAAAGGCACCAGGTGTCTCTAAAACAGCGATACCGTGTGGGCCTTTTGAAAGAAATGCGGACAGAATGAAGCAACTGAGGACGGAGCATGTCCAGagGGTGATCGAGCTGGATGCTGACGGAAACCATCACAAATTCCTCTTTTTGGATGAGGCAGTCTTTAACCTGGCCAAGACAAGGAGGAGAGGTCGGAATTTCATTGGCCAGCGGGCAACCATCCATATACAGTACCTGGACAACGTGGGGCCAACGTCACCATGTATGCGGCTATATCGGAAGATGGTGAGGTGGGACGCAGACCTCATATTGGATCATATAATGCAGCTCTCCTtgtaaccttccttgatgagtcaaatcaggtctgtagagctgatggcgtgacctatgtcattgtgtgggataatgtcaggttccaccatgcacaaatggtgcaagcatggtttcaggcccatccacaatttaTCACCCTGTACTCACCCACATACTCTCCTTTTCTTAACCCGATTGAGGATTTTTCTCCACATagaggtggaaggtatatgataggtgcCCTCACAAACAAGCCACCCTTCTCAaggccatggatgacgcatgcaatgacatcacagcaggccagtgtcaggcctggattccccatgcccgaagattcttcccaagatgtttggctaatgaaaacatccattgtaatgtggatgagaacctggggccaaatccacaagacagggttgatggaaatatagaactacagtaatcaatcttttgttttgctttcaacagtaagccaggtgaggaacactgcagttgacgttttactgtagtttttttctattttgtagctaattattttagctttgattaaaaaaaaacctatattgtgattttattgtatttcatcaatggatttcagattttgttcaatgattccactgtctgtagtattctctctactagtccttttacGGTGACGTATTTATGTGTAGTAATATAATGAAACATGTACATATTTTGTATTACAATATTTAATGACTGTACGAaaaactacacagtgaaactattggtatcttgtgtgtgggtgaaCTAAATaaatgttcctatggtatttcatgatgagttatttgaaccaatgattccTCGTCCACGTGGCAATTCTGTAAGAGTCATATGGAGGCCAATTAGATGGTGGTCCGATCACATTTCTGTCTCCTATTAATACTTTTTGTACTTTTGATGGCAGCAAAAACGAGACGAGGAAGTAATCAAGACggctagcttgattaagcctcctccatgtatatctcacgagGTCAGGGTTTTTCAGCCTCCGTATATCCACTAGTTCTAATGTA
>TU1540810
GCCCCAACGAGGAAAGGCTGTGTGTCGTTAAGCTAGGGAGTGCTTGGAAATACAGGTGGAAGCAGCCTGTACATAGGGGCAGAGGAGGCGCGAACCAAGCAAGGTATGAGAGCCAGAGCCGTTGGATTGCCTGTTGTGACCTGGACTGTTGGACTAACCCCTTTGTGTATCGGACCGGATTGGCTGAGAACCCAAGTGTGAGGATTACCCCTGGGAAAAAGAACAAACAAAGAGAACGGCTTGTGAGCATCGTTCCTTACAACATGCAGCAGCCATTAAATGAAGCATTGGGGAGTCTGGGGGCTGCCGCCAATGGAACCTGCCGCCGATGAAATGTCAACTCCCCGTACCTGCGTCTCTTCTGCAGCGTCGTTCCTTACACTTATCAAGAGCACAtgtggccatccctactgcctctggcctggctgactcactaaacataaaatacatattttgtcaATAATCTCTGTGCTGGAGTGTGAACCTGCCTatccatacatttttaaaacaagaaaatggtgacttctgct

Function

NR:

description
PREDICTED: uncharacterized protein LOC106571143 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468843.2 False 1780 mRNA 0.44 3 17548205 17569882
TU1540810 True 530 lncRNA 0.50 3 17552057 17569945

Neighbor

gene id symbol gene type direction distance location
LOC110491477 psme3 coding downstream 153940 17389099 ~ 17394265 (-)
LOC110491474 LOC106579337 coding downstream 167495 17376457 ~ 17380710 (-)
LOC110491471 LOC106579339 coding downstream 188575 17356395 ~ 17359630 (-)
LOC110491470 LOC106579340 coding downstream 195820 17306058 ~ 17352385 (-)
LOC110491465 LOC106579029 coding downstream 374271 17158314 ~ 17212112 (-)
LOC110492844 LOC106589301 coding upstream 101604 17671486 ~ 17682483 (-)
LOC110491480 LOC106589300 coding upstream 114589 17684471 ~ 17694082 (-)
LOC110491482 LOC106579329 coding upstream 143998 17713880 ~ 17868844 (-)
LOC110491487 NA coding upstream 153005 17722887 ~ 17727796 (-)
ormdl3 LOC106579326 coding upstream 411507 17981389 ~ 17983893 (-)
G1347609 LOC106579335 non-coding downstream 140332 17405545 ~ 17407873 (-)
G1347556 NA non-coding downstream 254570 17287995 ~ 17293635 (-)
G1347345 arf1l non-coding downstream 317497 17207145 ~ 17230708 (-)
G1347807 NA non-coding upstream 5672 17575554 ~ 17575791 (-)
G1347851 NA non-coding upstream 26284 17596166 ~ 17607260 (-)
G1347877 NA non-coding upstream 60750 17630632 ~ 17630937 (-)
G1348028 LOC106579328 non-coding upstream 69729 17639611 ~ 17659833 (-)
G1348051 NA non-coding upstream 105125 17675007 ~ 17675304 (-)
G1347343 NA other downstream 352076 17195330 ~ 17196129 (-)
G1347067 NA other downstream 618773 16924522 ~ 16929432 (-)
G1345561 NA other downstream 1848942 15698985 ~ 15699263 (-)
G1345259 NA other downstream 2294635 15251377 ~ 15253570 (-)
prr15lb atd4b other upstream 847733 18417572 ~ 18423242 (-)
G1349366 NA other upstream 1064149 18634031 ~ 18634405 (-)
LOC110491541 LOC106579266 other upstream 1750988 19310970 ~ 19325094 (-)
G1349896 NA other upstream 1891159 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 2121810 19691616 ~ 19697840 (-)
G1347357 LOC106579032 non-coding downstream 357330 17186890 ~ 17194727 (-)

Expression


Co-expression Network