LOC110492844 (LOC106589301)


Basic Information

Item Value
gene id LOC110492844
gene name LOC106589301
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 17671486 ~ 17682483 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110492844
ATGGCCCAGGGTGTTGATGGAAGGCAGATTGCAGCCAACATCAGAGGCATTGGCATGATGCCAGATGGCTTCCCGGAGTGGAAGAAACATGCCTTTGGCGGTAACCAGGCCTCTTATGGCAAGAAGACAGAGCTTACCAtcctgcagcagagagagagagagcctgcccATCTACAAGCTAAAGGAGAAGCTCACACAAGCTGTCCACGATAATCAGACCCTGATTGTGGTTGGAGAGACTGGCTCTGGGAAAACCACCCAGATCACCCAGTACCTGGCCGAGGCAGGCTACACCACTCGGGGGAAGATCGGCTGCACTCAGCCCCGTCGTGTGGCAGCCACGTCTGTGGCCAAGAGAGTCTCTGAAGAGTATGGTTGCTGTCTGGGCCAGGAGTTGAGTGGACTACACCATCTGTTCTGCACCAGCCCTGAGACGATGATCAAGTAAGTACATGACATATGGTATGCTGCCGAGGGAATGTCCAATAGACCCAGACATGGGTCAGTACACCCTCGTCATGCTTGACGAGGCCCACGAGAGGACTCCATACTGACATGCTCTTTGATCTACTCAAGAAGGTGCACATGAAACGCCCAGACATGATGCTGATTGTGCCCTCGTCAACACTAGATGCTCTCAagttaaaaatataaaaacatTTTTCCCAGTACTACTTTGAGGCGCCCATCTTCACCATCCCAGGACGCACTTTCCCAGTGGAGGTGCTCTACTGCAAAGAGCCGGAGACAGACCACCTGGATACCAATCTCATCACCGTCATGCAGGTCCTCATGAGTGAGCCCCCAGGTGATGTCCCGGTGTTTCTGGCAGGTCAGGAGGAGATTGACACACCTTGAATGAACGGATGAAGTCACTGAGACCTGAAGGGCCTGAAATCATTATCCTACTGGTCTACTCCGCCCTGCCCAGCGAGATGCAGACCCGTATCTTTGACCATGCTCCCCCCTGCAGCAGAAAGGTAATAATTGTCACTAACATTGCTGAGATGTCTCTAACCACTGATGAGATGTACTATGTGGTGGACCCAGGCTTTGTGAAGAAGAATGTCTACAATTCCAAGACTGGCAGCGACCAACTAGTGGTGACCACCATATCCCAAGCCCAAGCTAAGCAGCAGTCTGGTAGAGCAGGAAGAACTAATGCTACCGTCTGTTTACAGAGCGAGCATACAGAGATGAGGTGTTCACCAGCAATGTGCCTGAGATCCAGATAACTAACCTGTCCAGCACCATGCTGTCTCTCAAGAGGGCTGAGATCCCTCTGGAGCCCATGCTGTGTAAGAAGCCGAGCATGTCCGTCCACCTGGGCTGCAGTAAGGAGATGCTCACCGTTGTGTCCATGCTGCCTGTGTAGAACGTCTTCTCCAGGCCCAAGGACAAGCAGGCCCTGGCTGACCAGAAGAAGGCCACGTTCCACCAAGCCGAGGGATCCCACCTTACCCTGCTGAATGTCTATAGCTCCTGGATGGAAGAACAAGTACACCAACCCTTGGTGCTTCGAGAACTTTATCCAAACTCGCTCCTTGCGCATAGCCCTGCATTTATGTAAACAGTTTATGTAAACAGATGCTGGGCATCATGGACAGGTAGGACATTCATCATAAGATTTGACCTGTGCCACGTGGAAATGCCACAGTGCTCAAACAAAAGGTAATCTGCAGTGGTTTCTTCCGGAATGCAGCTAAAAAGGAACCCTGGGAAGGCTACTGTACCCTCATTGACCAGCAGGTGGTGTAAATCCAACTCTCCAGATCTCTGTTCAACATCCAGCCTGAGTTATGAGTCTATAACCATTGGGGCTCTAAGCATAtctaa

Function

NR:

description
ATP-dependent RNA helicase DHX8-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110492844 True 1836 mRNA 0.51 14 17671486 17682483

Neighbor

gene id symbol gene type direction distance location
LOC110491488 NA coding downstream 101604 17548205 ~ 17569945 (-)
LOC110491477 psme3 coding downstream 277221 17389099 ~ 17394265 (-)
LOC110491474 LOC106579337 coding downstream 290776 17376457 ~ 17380710 (-)
LOC110491471 LOC106579339 coding downstream 311856 17356395 ~ 17359630 (-)
LOC110491470 LOC106579340 coding downstream 319101 17306058 ~ 17352385 (-)
LOC110491480 LOC106589300 coding upstream 1988 17684471 ~ 17694082 (-)
LOC110491482 LOC106579329 coding upstream 31397 17713880 ~ 17868844 (-)
LOC110491487 NA coding upstream 40404 17722887 ~ 17727796 (-)
ormdl3 LOC106579326 coding upstream 298906 17981389 ~ 17983893 (-)
LOC110491491 LOC106579324 coding upstream 344031 18026514 ~ 18073389 (-)
G1348028 LOC106579328 non-coding downstream 11653 17639611 ~ 17659833 (-)
G1347877 NA non-coding downstream 40549 17630632 ~ 17630937 (-)
G1347851 NA non-coding downstream 64226 17596166 ~ 17607260 (-)
G1347807 NA non-coding downstream 95695 17575554 ~ 17575791 (-)
G1348058 NA non-coding upstream 14445 17696928 ~ 17697264 (-)
G1348060 NA non-coding upstream 17387 17699870 ~ 17700094 (-)
G1348064 NA non-coding upstream 20542 17703025 ~ 17703300 (-)
G1348032 NA non-coding upstream 21248 17703731 ~ 17706382 (-)
G1348036 NA non-coding upstream 24636 17707119 ~ 17707466 (-)
G1347343 NA other downstream 475357 17195330 ~ 17196129 (-)
G1347067 NA other downstream 742054 16924522 ~ 16929432 (-)
G1345561 NA other downstream 1972223 15698985 ~ 15699263 (-)
G1345259 NA other downstream 2417916 15251377 ~ 15253570 (-)
prr15lb atd4b other upstream 735132 18417572 ~ 18423242 (-)
G1349366 NA other upstream 951548 18634031 ~ 18634405 (-)
LOC110491541 LOC106579266 other upstream 1638387 19310970 ~ 19325094 (-)
G1349896 NA other upstream 1778558 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 2009209 19691616 ~ 19697840 (-)

Expression


Co-expression Network