LOC110491480 (LOC106589300)


Basic Information

Item Value
gene id LOC110491480
gene name LOC106589300
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 17684471 ~ 17694082 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564962.2
TTTTTAGTGTCGCTGACGAGACACTtaccaaaaaaaaaatgaatgctGCTGTTTTCTTCTGAACACAAAACAGTCTCTTGGATAATGTCACACATCGGCGATAACGAGCTAGAACAACTGGAATACCTCTCGTTGGTATCCAAAGTGTGCACAGAACTCGACAACCATTTGGGGATAAGTGATAAAGATCTAGCTGAGTTTGTCATCAGCCTTGCTGAAAAGCAACCAACATTTGATGGCTTCAAATCACTTCTGCTGAAAAATGGAGCAGAATTCACAGATTCACTCGTCGGCAATTTGCTCAGACTTATTCAAACGATGCGGCCTCCACCAAAGGCATCTTCAAGCAAAGCCTTTGAACCTGTGGTCAAGCAGAAGAGTGACAAGGACAAGCTGAAGGAATTGTTTCCTGCATTATGCAGGCCAGACGATCCTGCTCCCAAgGCCATATTGGATGAAGACGATGTGAAGATCGCCGACGCTGCCATGAAGGAGTTGGAGATGTTCATGCCCAGTGTGAGCAGATCAGACTCAAAGAGCAAGAGCAGGTCGGACAAAAAGAGGAGGCACAGCAGAAGTCGGAGCCGAGACCGGGACAGGAGGCGGCGTCACCGTTCTCGGTCCCGCTCACGCTCTAGGTCTCGCTCTAGGGACCGGGaccgtcagagagagagagaccgtgagcGGGACCGCGACCGTGGTAAGAAACGTGCGTCTCGCTGGAATGAGCGCAGCCGTACCCCCAGCCCCCacagagaccgagacagggaCACAAAGGAAGGCTCGGACCGGTGGAAGGACAAACACGTGGACCGTCCTCCACCAGAGGAGCCTACTGTAGGGGACATCTTCAATGGCAAAATCACCAGCATCATGCAGTTTGGCTGCTTCGTGCAACTGGAAGGGCTGAGGAAACGCTGGGAGGGCTTAGTCCACATCTCCGAGCTGCGCAGAGAGGGACGCGTTGCCAATGTGGCTGATGTGGTCCAGAAAGGTCAAAGGGTCAAGATCAAGGTGCTGTCCTTCACTGGCTCCAAGACCAGTCTCAGTATGAAGGATGTAGACCAGGAAACAGGGGAGGACCTGAACCCCAACCGGAGGAGGAACCAGGGCCCTGATGGTGAGGAGGAGAAAATCATGAGGAACCCCGACCGCCCAACCAACCTCAACTTGGGCCACGCCCCTGAGTTGGAGGACGACACACTGGAGCGCAAGAGGCTGACCAAGATATCGGACCCCGAGAAGTGGGAGATCAAACAGATGATTGCTGCTAATGTTCTTTCTAAAGAGGAGTTCCCTGACTTTGATGAGGAGACCGGTATCCTCCCCAAAGTAGATGACGAAGAAGACGAGGACCTGGAGATTGAGCTGGTGGAGGAGGAGCCTCCGTTCCTGAGAGGACACACTAAACAGAGTATGGACATGAGCCCTGTCAAGATTGTCAAGAATCCAGACGGCTCGCTGTCCCAGGCAGCCATGATGCAGAGTGCTTTGGctaaggagaggagggaagtgaAGCAGTGTCAGCGAGAGGCCGAGATGGACTCCATCCCCATGGGCCTGAACAAACACTGGGTAGACCCCCTGCCTGACGTTGATGGGAGACAGATTGCAGCCAACATGAGAGGCATCGGCATGATGCCAACTGACATCCCGGAGTGGAAGAAACATGCCTTTGGGGGCAACAAGGCCTCTTATGGCAAGAAGACAGCGATGTCCAtcctggagcagagagagagcctgCCTATCTACAAGCTGAAAGAGCAGCTCATACAGGCTGTCCACGATAACCAGATCCTGATTGTTATTGGCGAGACTGGCTCTGGGAAAACCACCCAGATCACCCAGTACCTGGCTGAGGCAGGGTACACCACTCGGGGGAAGATCGGCTGCACTCAGCCCCGTCGTGTGGCAGCCATGTCCGTGGCCAAGAGAGTCTCTGAAGAGTACGGTTGCTGTCTGGGCCAGGAGGTTGGATACACCATTCGTTTTGAGGACTGCACCAGCCCTGAGACAGTGATTAAGTACATGACGGATGGTATGTTGCTGAGGGAGTGTCTGATAGATCCGGACCTTGGCCAGTACGCCATTATCATGTTGGATGAGGCCCACGAGAGGACCATCCATACCGACGTACTCTTCGGTCTGCTCAAGAAGacgGTGCAGAAACGCACGGACATGAAACTCATTGTGACTTCGGCCACACTTGATGCCGTCAAGTTCTCTCAGTACTTCTACGAAGCGCCCATCTTCACCATCCCAGGGCGTACCTACCCAGTGGAGGTGCTCTACACCAAAGAGCCGGAGACAGACTACCTGGATGCCAGTCTCATCACCGTCATGCAGATCCACCTGACTGAGCCCCCGGGTGATGTCCTGGTGTTTCTGACGGGCCAGGAGGAGATCGACACCGCTTGTGAGATCTTGTATGAACGGATGAAGTCACTGGGACCTGAAGTGCCTGAACTCATCATCCTACCGGTCTACTCCGCCCTGCCCAGCGAGATGCAGACCCGTATCTTTGACCCTGCTCCCCCCGGCAGCAGAAAGGTCGTCATTGCCACTAACATTGCTGAGACATCTCTGACAATCGACGGTATCTACTATGTGGTGGACCCAGGCTTTGTGAAGCAAAAGGTGTACAACTCCAAGACTGGTATTGACCAGCTGGTGGTGACCCCCATCTCACAGGCCCAAGCCAAGCAGCGGGCTGGAAGAGCTGGAAGAACTGGTCCAGGGAAGACCTACAGGCTGTACACAGAGAGAGCCTACAGAGACGAGATGCTCACCACCAACGTGCCTGAGATCCAGAGAACTAACTTGGCCAGCACGGTGCTGTCTCTCAAGGCTATGGGCATCAATGACCTGCTGTCGTTTGACTTCATGGACGCGCCACCCATGGAGACGCTGATCACGGCCATGGAGCAGCTCTACACTCTGGGGTCTCTGGACGATGAAGGGTTGCTCACTCGCCTTGGACGCAGGATGGCAGAGTTCCCTCTGGAGCCCATGCTGTGTAAGATGCTGATCATGTCCGTCCACCTGGGCTGCAGTGAGGAGATGCTCACCATCGTCTCCATGCTGTCTGTGCAGAACGTCTTCTACAGGCCCAAGgacaagCAGGCCCTGGCTGACCAGAAGAAGGCAAAGTTCCACCAGGCCGAAGGAGACCACCTTACCCTGCTGGCAGTGTATAACTCCTGGAAGAACAACAAGTTCTCCAACCCTTGGTGCTACGAGAACTTCATCCAGGCCCGCTCCTTGCGCAGAGCCCAGGACATCCGTAAACAGATGTTGGGCATCATGGACAGACACAAACTGGACGTGGTGACTTGTGGAAAGGCCACAGTGCGTGTACAGAAGGCCATCTGCAGTGGTTTCTTCCGGAACGCAGCCAAAAAGGATCCCCAGGAAGGCTACCGTACCCTCATTGACCAACAGGTGGTGTACATCCACCCCTCCAGTGCCCTGTTCAACCGCCAGCCTGagtgGGTGGTGTACCACGAGCTGGTGCTGACCACGAAAGAGTACATGAGGGAAGTGACCACCATTGACCCACGCTGGCTGGTAGAGTTCTCACCGGCCTTCTTCAAAGTTTCCGACCCCACACGCCTCAGCAAACAGAAGAAGCAGCAGCGCCTCGAGCCCCTCTACAACCGCTACGAAGAGCCCAACGCATGGAGAATCTCCCGCGCCTTCCGTCGGCGCTAGAATGTCTATCCTGTATCTCCACACAAAGGAAGAGATGGACACAGTCCTGTATCAGTTGGTAGAGAAATACCGTGGAGAGACATTGTGCCTGTGCCAACAGGCCTCACTAACTCTTACTTATTGGTCAAGCTGAGGCATTGTCTACTTGTTTTAGACGTGTAAATGATGTGTTTTGTGTCTGCTCAGCTGATTTTATTCAACCACTCATTTTGATCTGAGGTATTGGTAGGCCTAATTCTCTCTTGATCTGTATAGAAGACGACTAGCAAAGTGAGACGGTTAAGGGGCCAGGTCATTGCTTCCCCTGTCCTTACAGGCTTATTTGGGTAATATGAGTCAATGTCTCATCCCCATGAGGAGAATCAATCTTCTATCTGAGCATCAAGGACAACGAAGCTGTTTTATTTGTTCGTTTTACTTGAATGTCACATCTGACCTGTGGTGAAAACTTCAGAAAAAGGACAAATTGAGTAGGAAGGGGACTGGGTAGTAATTTGAAAAGTGGGTGAATGTCTTTGTCTCAGAGCACTGTTCTCCTAAAACAGAATTTAACTTTTATAGTAGGCTATCTTTTATAAAAAGAAGGGAAATGGATGGAACTATGTACTCGGACATTGTCTTTATTTAGCTTTGAGTGATTGTTTCACTGTGCTAATGTACTCCTTACACTTTCTGCCCTCATTAAATATTGTATTGCTCTCA

Function

NR:

description
ATP-dependent RNA helicase DHX8-like

GO:

id name namespace
GO:0070054 mRNA splicing, via endonucleolytic cleavage and ligation biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12818 DHX8, PRP22; ATP-dependent RNA helicase DHX8/PRP22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564962.2 True 4413 mRNA 0.52 22 17684471 17694082

Neighbor

gene id symbol gene type direction distance location
LOC110492844 LOC106589301 coding downstream 1988 17671486 ~ 17682483 (-)
LOC110491488 NA coding downstream 114589 17548205 ~ 17569945 (-)
LOC110491477 psme3 coding downstream 290206 17389099 ~ 17394265 (-)
LOC110491474 LOC106579337 coding downstream 303761 17376457 ~ 17380710 (-)
LOC110491471 LOC106579339 coding downstream 324841 17356395 ~ 17359630 (-)
LOC110491482 LOC106579329 coding upstream 19798 17713880 ~ 17868844 (-)
LOC110491487 NA coding upstream 28805 17722887 ~ 17727796 (-)
ormdl3 LOC106579326 coding upstream 287307 17981389 ~ 17983893 (-)
LOC110491491 LOC106579324 coding upstream 332432 18026514 ~ 18073389 (-)
LOC110491492 LOC100380795 coding upstream 386190 18080272 ~ 18088335 (-)
G1348051 NA non-coding downstream 9167 17675007 ~ 17675304 (-)
G1348028 LOC106579328 non-coding downstream 24638 17639611 ~ 17659833 (-)
G1347877 NA non-coding downstream 53534 17630632 ~ 17630937 (-)
G1347851 NA non-coding downstream 77211 17596166 ~ 17607260 (-)
G1347807 NA non-coding downstream 108680 17575554 ~ 17575791 (-)
G1348058 NA non-coding upstream 2846 17696928 ~ 17697264 (-)
G1348060 NA non-coding upstream 5788 17699870 ~ 17700094 (-)
G1348064 NA non-coding upstream 8943 17703025 ~ 17703300 (-)
G1348032 NA non-coding upstream 9649 17703731 ~ 17706382 (-)
G1348036 NA non-coding upstream 13037 17707119 ~ 17707466 (-)
G1347343 NA other downstream 488342 17195330 ~ 17196129 (-)
G1347067 NA other downstream 755039 16924522 ~ 16929432 (-)
G1345561 NA other downstream 1985208 15698985 ~ 15699263 (-)
G1345259 NA other downstream 2430901 15251377 ~ 15253570 (-)
prr15lb atd4b other upstream 723533 18417572 ~ 18423242 (-)
G1349366 NA other upstream 939949 18634031 ~ 18634405 (-)
LOC110491541 LOC106579266 other upstream 1626788 19310970 ~ 19325094 (-)
G1349896 NA other upstream 1766959 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 1997610 19691616 ~ 19697840 (-)

Expression


Co-expression Network