LOC110491492 (LOC100380795)


Basic Information

Item Value
gene id LOC110491492
gene name LOC100380795
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18080272 ~ 18088335 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564977.2
TAGCTCATTTACGTATTTCCTATCGCATTCTTGACGGTTGTAGGCAGGCAGCTTTTGAATAGGTAAGATGGCGGCTGCGGCAGTGGTTGAGTTTCAGAGAGCTCAGTCTCTTATTAGCACGGATCGTAACGCCTCTATTGATATTCTACATTCTATTGTGAGGAGAAATATCCAGGACAGTGATGAAGAATCCGTTCGGGTTAAAGAACAGAGCATCCTGGAGCTGGGGTCACTCCTGGCCAAAACAGGACAGGCTGCAGAGTTGGGGGGTCTGCTGAAGTTTGTGCGGCCGTTCCTCATCTCCATCAGTAAGGCCAAGGCGGCCCGGCTGGTCCGCTCCCTGCTGGACCTCTTCCTGGACATGGAGGCAGCCACAGGCCAGGAGGTGGATCTGTGTCTGGAATGCATTGAGTGGGCCAAGGTGGAGAAGAGGACCTTCCTCAGGCAGGCTCTGGAGGCCCGCTTGATTTCACTCTATTTTGACACCAAAAGATACCAGGAGGCCTTGGCGCTTGGCACCCAGCTGCTCCATGAGCTGAAGAAGATGGACGACAAGGCGCTGCTGGTGGAGGTGCAGCTGCAGGAGAGCAAGACGTACCACGCGCTTAGCAACCTGCCCAAGGCCCGCGCCGCCCTCACATCCGCCCGCACTACGGCCAATGGAATCTACTGTCCCCCCAAGCTGCAGGCCGCCCTGGACATGATGTCAGGGATCGTCCATGCGGCTTCGGAGAAGGACTGGAAGACTGCCTACTCCTACTTCTTTGAGGCCTTCGAGGGCTACGATTCCATCGACCACCCTAAAGCCATCACCGGTCTCAAATACATGCTGCTCTGCAAGATCATGCTTAGCCTACCAGAAGAGGTGCAGTCCCTGATTAGCGGAAAACTGGCCCTGCGGCATGCGGGCCGACAGacGGATGCACTGAAATGCGTTGCACAAGCCAGCAAGAACAGATCATTAGCCGACTTTGAAAAGGCCCTTACGGAATACAAAGCAGAGTTGAGGGACGACCCCATCATCAGAACCCACCTGGCCACGCTGTATGACAACCTGCTGGAAGGGAACCTTATCCGTGTCATCGAACCCTTCTCCAGAGTACAGATTGAACACATATCAGGTCTCATCAAACTTTCAAAGGCGGATGTCGAGAGGAAATTGTCACAGATGATCCTGGACAAGAAGTTTCATGGGATCCTGGACCAAGGCGAGGGTGTCTTGATCATATTTGACGAGCCACCTGTTGACAAGACTTATGGCGCGGCCCTGGAAACTATTCAGAACATGAGCAAAGTTGTGGACTCGCTTTACAACAAAGCGAAGAAGCTAACATAGAACAAATGGCGAGACCACAGCAGCACAGTGGcggatgtgtgtgtgaccagcGTGTGTAACATTTTAAGAAAGGGACAAGGGAGAGTGACAAAACAACAAGTCCCACAACAAACTGCAACAAAAACAGGATTCCCGGTTCCCCCTCATGAAAGTTCCCCCTCAATGGACAATTTCATAATCTCTTCtcctttttttcttttcttttaggATTCTGTTCAAATCTCATCGGCCACAGCAGGCCATCAGGGAATATTGTACAACCACAAAATATTAAGAAAGATTAAATACACGTTTATCTCCTGTAGAATAAAGATTGGGCTTATAAAGCCTCCAGCTGACTCCGTTACCACCCACAAAGGTGCAATATCGACCACAAGCAAGCGCCACCAATCCCGCTTCTTTTACATGCAGGGACAAGGCTTTTGGTCAAGGcggtctctcccccccccccccccgttcataTCTTTCTAAAGCACATGGTTTTTAGCTAGTTGGAGGTAGGTTAGAAAATATTGGGATATCCCGGCAGTTACATTTGGTCAAAGAGCTCCCTCTAGCTCTTGCTGTTCTCATCATATCCATGCCAACAGTCAGTCCAATTCCCCTACATGACATTTCAAATGGTTGTCAACTTCACTTCATTCGGATTGCGTTTGTTTTGTAACTAAAATAAATTGCCTGACACTATTTGTCCCCTTCTTAAGTACATAGAGCAGAATGGATGCCATTTCACAATGCCAGTGGCCCCTTTTCGGCCCTCTGCTTTGCCTCAACGTTTGGCTGCAACATAATTTAGGGGTGCAGAAATTTGAGATTTATTGATTTGCCTCTGAGCGTCTGTCTGAACCGAAGTGAACGGTTATCCATTGTTATTGCCTAGCCCTAGTGTGGTATGCTAGTAACCAAACAATTGTTTTGTTTCATTTGTCATtttcaaaaataaatattttgtatttttaatgtTTTTGTCTGCCTCTTGGAAAAAAATATCACTGACCTTGGTCAAGTTCAATTGGGCTATTTTAGCCCTCTGATGTGCTCTTGTGCTGAGGTAATAGGGGTAGGATGTTGGGTGCCCGTTGTTGGATAACTGACTTCAGTTGATTTAGATTCCAGTGTAGAAATGAAGGTCTAATAGACCAAGGCCTTGGAAGTAAATGTCTGCTAGGACTAGCAGCTTCAACTGGGTGGTGAATAATGAATGCCTCCTAGTTGCTTACTGGGTGGAAGGAAAGAGACTACAATGAAAGGGAAGAGAAGTGTATGCAGTAGGAAGAATCCCTGTCCAATCAACTCTGGGATTACCATGTTGTGAACTGCATTAGAGGGTTATGAATACTGTATAGGAGAACTGATGGTGTTCTGTATTGTCTTTACTCCTGTTGGGCAAATGTTCCTGTGTTGGAAAATGGCCTCTTCCCAAAGGGCATTAAAACACAATTTCAATGACAACTtggattgttttttttgttttttttacagatgTACAATGTAAAGATTTTATGAACCTGTTTGTGAAATGAAATGTGGTCATTGAGTTGAAAAGGGAAGGTTTTGGATTCTGACAAGGTGTTAATGCACTGGATAAGACCATGATATTCTGTTTTCACTCAAGTTTTGGTTCAGATGGTTCATCATTACGTAGAGTTCATGACTTCTGTTTCTTGTGCACCAGAGTTCTCCAATATTAAAGTGCCATAAACTGCACTGAAGTGAAATCAAGCTTTTTCCCCTCTTGTCAGTGAAGCATTTCAGTGTTTCAGTATGTTGACAAAAAGCACAGCCATTAAACACTTTCACTAGTGGAAGTCCCATTTCAAGGATGCTCTCTTATAATCCATTAATTTTGAGATGAACGATTTTGACAAAATGCAATTTTAAACTAAAAGCTTGAGGTGAATAGATgtcatgtacatgtaggtataacATTGAGCAGAAACATGATGGACCTATTTTATTGTTTACAGAAAGTGTCCAACATTTTTATGAAAAATAGAGTAGATATAACACATCTACCTTGGCCCCTCAAAAGCAACTtttgtgtatttttattttaaatgtttatttgacAGGTATGTAATATAACCCCTAAAGCCATCCAACCGCTTCACCCAGTTTTCCAAACCCAAAAAAGTATTGTTGCTTGTTTTGGATTTctatacacatcaatatcaaATGTACAAACGGTTCTTGCTGACCAACAATTACCGAGTATATCTGATGTTCAGATGAGTTCAAAATAAATCtctttttttttcaaaaa

Function

NR:

description
PREDICTED: 26S proteasome non-ATPase regulatory subunit 11B

GO:

id name namespace
GO:0000502 proteasome complex cellular_component

KEGG:

id description
K03036 PSMD11, RPN6; 26S proteasome regulatory subunit N6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564977.2 True 3599 mRNA 0.45 13 18080272 18088335

Neighbor

gene id symbol gene type direction distance location
LOC110491491 LOC106579324 coding downstream 6883 18026514 ~ 18073389 (-)
ormdl3 LOC106579326 coding downstream 96379 17981389 ~ 17983893 (-)
LOC110491482 LOC106579329 coding downstream 211428 17713880 ~ 17868844 (-)
LOC110491487 NA coding downstream 352476 17722887 ~ 17727796 (-)
LOC110491480 LOC106589300 coding downstream 386190 17684471 ~ 17694082 (-)
myo1d LOC106579321 coding upstream 10624 18098959 ~ 18222915 (-)
LOC110491495 LOC106579322 coding upstream 135149 18223484 ~ 18226919 (-)
pdk2a LOC106579320 coding upstream 143191 18231526 ~ 18242110 (-)
LOC100136345 osbpl7 coding upstream 308142 18396477 ~ 18409234 (-)
mrpl10 mrpl10 coding upstream 321440 18409775 ~ 18412088 (-)
G1348629 NA non-coding downstream 1222 18078544 ~ 18079050 (-)
G1348627 NA non-coding downstream 4872 18075153 ~ 18075400 (-)
G1348626 NA non-coding downstream 5653 18074368 ~ 18074619 (-)
G1348575 NA non-coding downstream 100016 17974581 ~ 17980256 (-)
G1348182 NA non-coding downstream 169066 17910910 ~ 17911206 (-)
G1348630 NA non-coding upstream 4153 18092488 ~ 18095817 (-)
G1348631 NA non-coding upstream 8548 18096883 ~ 18097176 (-)
G1348669 NA non-coding upstream 75024 18163359 ~ 18164362 (-)
G1348689 NA non-coding upstream 110466 18198801 ~ 18199108 (-)
G1348784 NA non-coding upstream 245993 18334328 ~ 18334543 (-)
LOC110491477 psme3 other downstream 688318 17389099 ~ 17394265 (-)
G1347343 NA other downstream 884143 17195330 ~ 17196129 (-)
G1347067 NA other downstream 1150840 16924522 ~ 16929432 (-)
G1345561 NA other downstream 2381009 15698985 ~ 15699263 (-)
G1345259 NA other downstream 2826702 15251377 ~ 15253570 (-)
prr15lb atd4b other upstream 329280 18417572 ~ 18423242 (-)
G1349366 NA other upstream 545696 18634031 ~ 18634405 (-)
LOC110491541 LOC106579266 other upstream 1232535 19310970 ~ 19325094 (-)
G1349896 NA other upstream 1372706 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 1603357 19691616 ~ 19697840 (-)

Expression


Co-expression Network