LOC110491495 (LOC106579322)


Basic Information

Item Value
gene id LOC110491495
gene name LOC106579322
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18223484 ~ 18226919 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564980.2
tgtgtgtgacattaGTCCCCGTACATGGGTATATAAGTCCATCCGCGGACTGATTTTCAAGATGCTGACCTAAACAGGGTCCCTCATCATTGACTCTGAGATGCAGTGTTTCCAGATGATTGCGTTAACTGTGGCTGTGTTCTTTGCTGTGCTATCACCCTACACAGTGGGCTCGGTAGGGAATGCCAGTTCTGTTGAGTTTAAGATTTGGAAGTTTGAGGATCAACCTTTGGTGATGCAACTTGCTGCTGTCTACAAGGAAATGGAACACTTCAAATGTGAACAAACAAATATCAGGCAACAGCTGGAGGCCCTGAATCAGATGCTGACAAGCCCTAAGAATGAGACTACAACAGAAATAGGCAGCACTTCTTTTGTTTACCCCCCAAACCATGGAGAGGGGGACATCGTGCAGTCATCAGAGGAAGAAGACTCCATGCGACCCTTCGATCCCTGCTTCCGCTACACCGTCCTGGACCAGCCCTGGAGGGCCACTAACACCAGCATCAAGAACAAGATGTGTGACCGCAACGTCAAGTGGCAAGGCTGGTACCGCCTGTTCTACAAGGGCAACAGTCTGCAGATGCCCGAGAGGTGTGTGCCCATGAACAAGTGTGGCACCCACGCCCCCCTGTGGCTGGCTGGGCCTCACCCGAAGAGGAGGGAAGGGATCGTCACCCGCAAGGTCTGCGGCCACTGGAACAAGAACTGCTGCGCTTTCAAGTCCACACCCATCAAAGTGAAGAAGTGCCAGGGCAATTATTACGTCTACAAGTTAACCAAACCGACGACATGTCACCTGGCCTACTGTGCAGATATCAACACCATTGTGTGTGGAAAGTGCAGGAAAAGCGAGACCTGTGTAAGTCGAGACAATATAAACTGGAGGTGTAAGAAGAAGCCAAGACcCCTGAAGAGAAAAGTCCACTTCTTTGCCTCCTATCCCGGGCCCATCTCAGGCAAGGTGAACCGCATCAAGTACAGGACTGTCCTTGTGAACGTTGGGCGAGCCTTCAACCGGAGGACCGGGGTGTTCCGGGCGCCTGTCAAAGGAGTCTACCAGTTCTTCTTCTCCACACAGAGTGGGAGACATGGTGTCAAGACGGACCTATGGTTGGTGATCAATGGTTACTGGGTGGCTGTCTCTCACACCAAAATCAGTAGTCCCTCCACTGTGGGTAATCTGTCCACTTATATGACCTTTCTGCGCAGAGGGTCCCTGGTGTATGTGAGCCAAGACTGTGGTAGCTCTTGGGCCACTGCTTCATCCAATACCATCACATTTGGTGGGTCACTGCTTGTTCAGTCGAAGAGGTAGACTAAAGCCAATATGTGTCTGTTTTCATTTAGTATATGATTCTTATTTATAGATTTAATGGTGTTTCTGTCAAAACAGCGTTGCAGTTGAAAACACTTCttctaacattttattttttattttggtcatttagcataGTCTACACTTttgtccagagcaacttacagtcagATGCATGGACATCAATCATTTGGCttaaaataaatactgtatgcaaGTGAAAGTTTGCTTTAATTCAAAATGAAAACAATTTAGATTCTCAAGAGTTGAAATTAGGCAGTCTTAATGTAATTCTCAGATTGTTTGACATTTAATTTCCATATTTTGCTGACATTTGCAAAAGGCACCAGTAAGAAAAATATTTCCCGCCCATGTTTTCAGAGTAAAATGCTGTGTGTGTTGATACTCTATATCACTAAGATAGGCCTTTTGTATTTTAATACAATTACAGTATAGTAATAAGAGATTGTAAAATAATAGCCTACCTCTCTCAAACACAAGATGGCATACTAGGGCATACAATTGTAATTAGTAGACAAATTACAGCAGCATCAGTGAAGTGATATAGACTGTCAGTCATAAACCTATATGTTGAGTTTATTTTGCCAGTGTTCAGTAGGCCTAATTCCAATAAATTAAAAGTGCTGAGTGTG

Function

NR:

description
uncharacterized protein LOC110491495

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564980.2 True 1971 mRNA 0.45 9 18223484 18226919

Neighbor

gene id symbol gene type direction distance location
myo1d LOC106579321 coding downstream 569 18098959 ~ 18222915 (-)
LOC110491492 LOC100380795 coding downstream 135149 18080272 ~ 18088335 (-)
LOC110491491 LOC106579324 coding downstream 150095 18026514 ~ 18073389 (-)
ormdl3 LOC106579326 coding downstream 239591 17981389 ~ 17983893 (-)
LOC110491482 LOC106579329 coding downstream 354640 17713880 ~ 17868844 (-)
pdk2a LOC106579320 coding upstream 4607 18231526 ~ 18242110 (-)
LOC100136345 osbpl7 coding upstream 169558 18396477 ~ 18409234 (-)
mrpl10 mrpl10 coding upstream 182856 18409775 ~ 18412088 (-)
prr15lb atd4b coding upstream 190653 18417572 ~ 18423242 (-)
si:ch211-194k22.8 LOC106579386 coding upstream 207266 18434185 ~ 18437208 (-)
G1348689 NA non-coding downstream 24376 18198801 ~ 18199108 (-)
G1348669 NA non-coding downstream 59122 18163359 ~ 18164362 (-)
G1348631 NA non-coding downstream 126308 18096883 ~ 18097176 (-)
G1348630 NA non-coding downstream 127667 18092488 ~ 18095817 (-)
G1348629 NA non-coding downstream 144434 18078544 ~ 18079050 (-)
G1348784 NA non-coding upstream 107409 18334328 ~ 18334543 (-)
G1348800 tbx21 non-coding upstream 152614 18379533 ~ 18380412 (-)
G1348804 NA non-coding upstream 163327 18390246 ~ 18390523 (-)
G1348778 NA non-coding upstream 163852 18390771 ~ 18392168 (-)
G1348858 NA non-coding upstream 287559 18514478 ~ 18514714 (-)
LOC110491477 psme3 other downstream 831530 17389099 ~ 17394265 (-)
G1347343 NA other downstream 1027355 17195330 ~ 17196129 (-)
G1347067 NA other downstream 1294052 16924522 ~ 16929432 (-)
G1345561 NA other downstream 2524221 15698985 ~ 15699263 (-)
G1345259 NA other downstream 2969914 15251377 ~ 15253570 (-)
G1349366 NA other upstream 407112 18634031 ~ 18634405 (-)
LOC110491541 LOC106579266 other upstream 1093951 19310970 ~ 19325094 (-)
G1349896 NA other upstream 1234122 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 1464773 19691616 ~ 19697840 (-)

Expression


Co-expression Network