prr15lb (atd4b)


Basic Information

Item Value
gene id prr15lb
gene name atd4b
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18417572 ~ 18423242 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564984.2
accagcctccactggtgtgtttgtgcatgcgcaagagagaaagagcgagagcaagagagagcgagagagagactgcaccTGTGACGGAACACCTGAGTGTCAACATAAGGAGGACTGAGAAACTGAGTGAATGTGAAaagagaacaggaagagaaagaaagaataatAAAGTATAAGAAATTAATGCAGAACCTCTAACTAGGAGAGCACTAAGATATGGTTGGACATTTTCACATCTGAAATCCACTCCCTCTCCAGGACAGAGACCAATTCTCCATCAACAAGGTCAATCCCCCCTCCAGTCTCTGTTTGTGCCATGGCTGACCCTAGCTGGTGGAAGCTGACCTTCTCACCTACGAAGTCTGAGGCAAAGGTTCTGTACGAGATCCCTCAAGAgtatggtaataataataataaggaacATCACAACAGCCCTCAGTTCCCCACAGACCCAATGGACAACCAATTCAGTGCCAGACTGGAGAAGATAGTGGATAAGTCGGCCACTAAAGGTCGCCATGTTAAGGTGTCCCACTCTGGTCGCTtcaaggagaagaagaagatccGTGCCACACTGGCTGAGAACCCTATGCTGTTCTCTGAACACAGTCTCAGGGATGAGAACCACAGGGCAGAGAAATAGCACATAACCAGGTGCATGCTTTTTAGGCTCTTTTTTTAAGTCATGCATTACAGACAGCCACACCATTCACGACACCAACACATCCATAATCTTATTGGTACAAAACATATATACACTCCCCAGGTGGGCTCCACACCTAAGTACACAGATAATACTGTAACCAGCTGAATTATCATGCACATCCACAACACTGTTCAAGGTTCATTGATGCAAACATATTAGAATGGATGGTATTTTTCACCAGTTCATTCCTGAGCTAACTGCACTTGGACAACACTGAACATTTCCAAGAATATGGCAATATGTTGCCTGTATCTTTACAAGGACTCATGACCAGTAACCTGGAGGGAATTTTTCACTGTAGTATAAGATAAATAAATTATGGAAAATGTTTAGCTGCAAAGGTTCATTTGTTATAAATGTTAGTTCCACATATTTTGTATATTTAATGACTTGTAATGATATGAAGAAGTCTAGTTTACGACATGGTGATGTAAGAATGTGTAAACTGGGCCCTCCATCAGGGATTCATCTTCCAGTTTGTCACTTCATCGGAGTCCGGTTGGTGGCGAGGCTTGGGCAAATGGAGTCAGAAAGGAGATGTGAGGGATACATGGTATTGAAGTGATCACAGAAAAGGGCATGTCCATCCATGAGAACAAGTCAGAGTATAATGTGAACCAGTGATTATTTGATTTATATACAGTTCTGTTTCATCTAACACATCTAAAGATCTGCATGAAATAAAGTTGATTGAAAAA
>TU1541907
gagagcgagagagagactgcaccTGTGACGGAACACCTGAGTGTCAACATAAGGAGGACTGAGAAACTGAGTGAATGTGAAaagagaacaggaagagaaagaaagaataatAAAGTATAAGAAATTAATGCAGAACCTCTAACTAGGAGAGCACTAAGATATGGTTGGACATTTTCACATCTGAAATCCACTCCCTCTCCAGGACAGAGACCAATTCTCCATCAACAAGGTCAATCCCCCCTCCAGTCTCTGTTTGTGCCATGGCTGACCCTAGCTGGTGGAAGCTGACCTTCTCACCTACGAAGTCTGAGGCAAAGGTTCTGTACGAGATCCCTCAAGAgtatggtaataataataataaggaacATCACAACAGCCCTCAGTTCCCCACAGACCCAATGGACAACCAATTCAGTGCCAGACTGGAGAAGATAGTGGATAAGTCGGCCACTAAAGGTCGCCATGTTAAGGTGTCCCACTCTGGTCGCTtcaaggagaagaagaagatccGTGCCACACTGGCTGAGAACCCTATGCTGTTCTCTGAACACAGTCTCAGGGATGAGAACCACAGGGCAGAGAAATAGCACATAACCAGGTGCATGCTTTTTAGGCTCTTTTTTTAAGTCATGCATTACAGACAGCCACACCATTCACGACACCAACACATCCATAATCTTATTGGTACAAAACATATATACACTCCCCAGGTGGGCTCCACACCTAAGTACACAGATAATACTGTAACCAGCTGAATTATCATGCACATCCACAACACTGTTCAAGGTTCATTGATGCAAACATATTAGAATGGATGGTATTTTTCACCAGTTCATTCCTGAGCTAACTGCACTTGGACAACACTGAACATTTCCAAGAATATGGCAATATGTTGCCTGTATCTTTACAAGGACTCATGACCAGTAACCTGGAGGGAATTTTTCACTGTAGTATAAGATAAATAAATTATGGAAAATGTTTAGCTGCAAAGGTTCATTTGTTATAAATGTTAGTTCCACATATTTTGTATATTTAATGACTTGTAATGATATGAAGAAGTCTAGTTTACGACATGGTGATGTAAGAATGTGTAAACTGGGCCCTCCATCAGGGATTCATCTTCCAGTTTGTCACTTCATCGGAGTCCGGTTGGTGGCGAGGCTTGGGCAAATGGAGTCAGAAAGGAGATGTGAGGGATACATGGTATTGAAGTGATCACAGAAAAGGGCATGTCCATCCATGAGAACAAGTCAGAGTATAATGTGAACCAGTGATTATTTGATTTATATACAGTTCTGTTTCATC

Function

NR:

description
proline-rich protein 15-like protein B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564984.2 False 1404 mRNA 0.42 2 18417572 18423242
TU1541907 True 1305 TUCP 0.42 2 18417615 18423186

Neighbor

gene id symbol gene type direction distance location
mrpl10 mrpl10 coding downstream 5484 18409775 ~ 18412088 (-)
LOC100136345 osbpl7 coding downstream 8338 18396477 ~ 18409234 (-)
pdk2a LOC106579320 coding downstream 175462 18231526 ~ 18242110 (-)
LOC110491495 LOC106579322 coding downstream 190653 18223484 ~ 18226919 (-)
myo1d LOC106579321 coding downstream 194657 18098959 ~ 18222915 (-)
si:ch211-194k22.8 LOC106579386 coding upstream 10943 18434185 ~ 18437208 (-)
cbx1b cbx1 coding upstream 24674 18447916 ~ 18457521 (-)
LOC110491502 skap1 coding upstream 53835 18477077 ~ 18512413 (-)
hoxb1b hoxb1 coding upstream 99211 18522453 ~ 18525045 (-)
LOC110491505 hoxb3 coding upstream 101964 18525206 ~ 18550690 (-)
G1348778 NA non-coding downstream 25404 18390771 ~ 18392168 (-)
G1348804 NA non-coding downstream 27049 18390246 ~ 18390523 (-)
G1348800 tbx21 non-coding downstream 37160 18379533 ~ 18380412 (-)
G1348784 NA non-coding downstream 83029 18334328 ~ 18334543 (-)
G1348689 NA non-coding downstream 218464 18198801 ~ 18199108 (-)
G1348858 NA non-coding upstream 91236 18514478 ~ 18514714 (-)
G1349314 NA non-coding upstream 110312 18533554 ~ 18533859 (-)
G1349317 NA non-coding upstream 114834 18538076 ~ 18538335 (-)
LOC110491477 psme3 other downstream 1025618 17389099 ~ 17394265 (-)
G1347343 NA other downstream 1221443 17195330 ~ 17196129 (-)
G1347067 NA other downstream 1488140 16924522 ~ 16929432 (-)
G1345561 NA other downstream 2718309 15698985 ~ 15699263 (-)
G1345259 NA other downstream 3164002 15251377 ~ 15253570 (-)
G1349366 NA other upstream 210789 18634031 ~ 18634405 (-)
LOC110491541 LOC106579266 other upstream 897628 19310970 ~ 19325094 (-)
G1349896 NA other upstream 1037799 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 1268450 19691616 ~ 19697840 (-)
LOC110491567 LOC106579249 other upstream 1907158 20330400 ~ 20334029 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00016659 NA coding CM030122.1 CM030122.1 26901376 ~ 26901744 (-)