si:ch211-194k22.8 (LOC106579386)


Basic Information

Item Value
gene id si:ch211-194k22.8
gene name LOC106579386
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18434185 ~ 18437208 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564999.2
tcctcactccctctctctgttttggcATCAAAGGGGATGTCTTCGCACGATGGTTCTGGAGTAGAAGAAAGACAGCAAGCGTCCCATCCTCCGTTTACCCAGGACACTTTCACTTATCAGTCTTCCCCAATATTTTGAACACGTGCAGTATGCTGGGCACAGTTTTTCTGCAAGGCAGTTAATGGAATAGAAATATGAGAAGGAAATCAAAGGCGAAACGAGTCCTTGACTACGAAAGTGAAGAAGATGAAGACGGGGCTCAAAAAGTAGATGCTTTTGAGCTGGGCAGTCCTAACTTGTATCACCTGAGGGACAGCAATTCCAATACAGAGGAGTCAGAGTTTCTGCAGTCATACTCCAAGATGAAACTCATTCCTATGGTGATTTGCATGCAAAGAGAGATGGAAAGCTTGAAAGACCAAATTCAGTGCCTTACAGCTTGTGGAGAGCTGTCCAGAAACCTCAAAGCCCTGATAGAAAAGACCCAGAGGTGGTCGAATGAGGACAGCAAGACATCTGTCCAAGCATCACGTCCCAGCCTAACTGTAGGACTTGTCAGTGGAGATGCCATGACCCCAGATTTACTGGCCTGCCCAACTGGGATGATTGGGCAGTGGGAGAAACAGGGGGCCTTACCCCAGAAACTACACAGGCACCATAGGGATGGACTCTTCACTGAGTTCATTACCCCAGAGTTGTTGGAACGGTGCAACACTGGCACTACAGCTCAGAAACTGACCAATGACCTGTTGCGAGGGCTGTATGAGAGGGACTGCCTAGCATCCCACTCCATCTCAGGGCTGGTGTACCACAAGAGGTCTCAGACCAAACCTGCTCTCCCTACTGAGGAGGTCCAGGCCATACTGAGGACAGTTCAGTATTTTTTTCCTGGAAAGACAGATGTGGAAATTAAAGGATACATCCGGCAGAAACTGCAGAACGAGGCGAAGAGGCTGAGGAAGAAGCCTCCACTGTTGGGAAATATGGATTCCAGCTTTGACCTCCCCTGCCCCAGAACGTAGTGTTAACATGGATTTTGTCGAGGATCAAAGGTGAAATATCTGATTGTGGATAATTGACAAATGCATGGAGGTaatatttaacttttttttttttttacttcaatgAACCATGTTTGACTGCTGACGTTTGTGAGCGGTTGAGATTTGAATAGGTGATCATGCAGAACGCAAGTTTATCCTCAGTTCAGTCAAACATGAATTCAAACTTTGCATTCACCCTGGCCTCTGGTTGCTGTAGATCTAAATAAAGCATAATACTGTAGCATATGTGAACTTTATGTCCCGATTATAAATAAATGCCAATTGTTTTTGAATTTTGTATTTTTAAGATAGTCATTTGCAAAACATTGGACCTTGCAAAATCAATGCTGAACGAGTGTTAGCACATTCTCAATGCCTTTGAAAATTAACTGTATGATGAGCCCCATGATGAgttagtgttgttgtttttgttgcaatgACAACCTGATAGTTGATTGGATTGAACAAAatatatctggaaatgtgcagtTTTTCCTTTATCCTGCATTATCAATAAAATACATAAGAAAATA
>XM_021564997.2
atcctcactccctctctctgttttggcATCAAAGGGGATGTCTTCGCACGATGGTTCTGGAGTAGAAGAAAGACAGCAAGCGTCCCATCCTCCGTTTACCCAGGACACTTTCACTTATCAGTCTTCCCCAATATTTTGAACACGTGCAGTATGCTGGGCACAGTTTTTCTGCAAGGCAGTTAATGGAATAGAAATATGAGAAGGAAATCAAAGGCGAAACGAGTCCTTGACTACGAAAGTGAAGAAGATGAAGACGGGGCTCAAAAAGTAGATGTAAGCTTTAATGGGGCGCAGAAAAGAAGAAAACAGATGTATCTTGATAAAGAGACAGTCGAAGAAAATTCTTTATCCTCAGCCGGCTTCCAGAAGTGGATACGGGCTTTTGAGCTGGGCAGTCCTAACTTGTATCACCTGAGGGACAGCAATTCCAATACAGAGGAGTCAGAGTTTCTGCAGTCATACTCCAAGATGAAACTCATTCCTATGGTGATTTGCATGCAAAGAGAGATGGAAAGCTTGAAAGACCAAATTCAGTGCCTTACAGCTTGTGGAGAGCTGTCCAGAAACCTCAAAGCCCTGATAGAAAAGACCCAGAGGTGGTCGAATGAGGACAGCAAGACATCTGTCCAAGCATCACGTCCCAGCCTAACTGTAGGACTTGTCAGTGGAGATGCCATGACCCCAGATTTACTGGCCTGCCCAACTGGGATGATTGGGCAGTGGGAGAAACAGGGGGCCTTACCCCAGAAACTACACAGGCACCATAGGGATGGACTCTTCACTGAGTTCATTACCCCAGAGTTGTTGGAACGGTGCAACACTGGCACTACAGCTCAGAAACTGACCAATGACCTGTTGCGAGGGCTGTATGAGAGGGACTGCCTAGCATCCCACTCCATCTCAGGGCTGGTGTACCACAAGAGGTCTCAGACCAAACCTGCTCTCCCTACTGAGGAGGTCCAGGCCATACTGAGGACAGTTCAGTATTTTTTTCCTGGAAAGACAGATGTGGAAATTAAAGGATACATCCGGCAGAAACTGCAGAACGAGGCGAAGAGGCTGAGGAAGAAGCCTCCACTGTTGGGAAATATGGATTCCAGCTTTGACCTCCCCTGCCCCAGAACGTAGTGTTAACATGGATTTTGTCGAGGATCAAAGGTGAAATATCTGATTGTGGATAATTGACAAATGCATGGAGGTaatatttaacttttttttttttttacttcaatgAACCATGTTTGACTGCTGACGTTTGTGAGCGGTTGAGATTTGAATAGGTGATCATGCAGAACGCAAGTTTATCCTCAGTTCAGTCAAACATGAATTCAAACTTTGCATTCACCCTGGCCTCTGGTTGCTGTAGATCTAAATAAAGCATAATACTGTAGCATATGTGAACTTTATGTCCCGATTATAAATAAATGCCAATTGTTTTTGAATTTTGTATTTTTAAGATAGTCATTTGCAAAACATTGGACCTTGCAAAATCAATGCTGAACGAGTGTTAGCACATTCTCAATGCCTTTGAAAATTAACTGTATGATGAGCCCCATGATGAgttagtgttgttgtttttgttgcaatgACAACCTGATAGTTGATTGGATTGAACAAAatatatctggaaatgtgcagtTTTTCCTTTATCCTGCATTATCAATAAAATACATAAGAAAATA
>XM_021564998.2
ACAGTGCCACGTTACGCCTCAGTGTATAAaatcctcactccctctctctgttttggcATCAAAGGGGATGTCTTCGCACGATGGTTCTGGAGTAGAAGAAAGACAGCAAGCGTCCCATCCTCCGTTTACCCAGGACACTTTCACTTATCAGTCTTCCCCAATATTTTGAACACGTGCAGTATGCTGGGCACAGTTTTTCTGCAAGGCAGTTAATGGAATAGAAATATGAGAAGGAAATCAAAGGCGAAACGAGTCCTTGACTACGAAAGTGAAGAAGATGAAGACGGGGCTCAAAAAGTAGATAATGGGGCGCAGAAAAGAAGAAAACAGATGTATCTTGATAAAGAGACAGTCGAAGAAAATTCTTTATCCTCAGCCGGCTTCCAGAAGTGGATACGGGCTTTTGAGCTGGGCAGTCCTAACTTGTATCACCTGAGGGACAGCAATTCCAATACAGAGGAGTCAGAGTTTCTGCAGTCATACTCCAAGATGAAACTCATTCCTATGGTGATTTGCATGCAAAGAGAGATGGAAAGCTTGAAAGACCAAATTCAGTGCCTTACAGCTTGTGGAGAGCTGTCCAGAAACCTCAAAGCCCTGATAGAAAAGACCCAGAGGTGGTCGAATGAGGACAGCAAGACATCTGTCCAAGCATCACGTCCCAGCCTAACTGTAGGACTTGTCAGTGGAGATGCCATGACCCCAGATTTACTGGCCTGCCCAACTGGGATGATTGGGCAGTGGGAGAAACAGGGGGCCTTACCCCAGAAACTACACAGGCACCATAGGGATGGACTCTTCACTGAGTTCATTACCCCAGAGTTGTTGGAACGGTGCAACACTGGCACTACAGCTCAGAAACTGACCAATGACCTGTTGCGAGGGCTGTATGAGAGGGACTGCCTAGCATCCCACTCCATCTCAGGGCTGGTGTACCACAAGAGGTCTCAGACCAAACCTGCTCTCCCTACTGAGGAGGTCCAGGCCATACTGAGGACAGTTCAGTATTTTTTTCCTGGAAAGACAGATGTGGAAATTAAAGGATACATCCGGCAGAAACTGCAGAACGAGGCGAAGAGGCTGAGGAAGAAGCCTCCACTGTTGGGAAATATGGATTCCAGCTTTGACCTCCCCTGCCCCAGAACGTAGTGTTAACATGGATTTTGTCGAGGATCAAAGGTGAAATATCTGATTGTGGATAATTGACAAATGCATGGAGGTaatatttaacttttttttttttttacttcaatgAACCATGTTTGACTGCTGACGTTTGTGAGCGGTTGAGATTTGAATAGGTGATCATGCAGAACGCAAGTTTATCCTCAGTTCAGTCAAACATGAATTCAAACTTTGCATTCACCCTGGCCTCTGGTTGCTGTAGATCTAAATAAAGCATAATACTGTAGCATATGTGAACTTTATGTCCCGATTATAAATAAATGCCAATTGTTTTTGAATTTTGTATTTTTAAGATAGTCATTTGCAAAACATTGGACCTTGCAAAATCAATGCTGAACGAGTGTTAGCACATTCTCAATGCCTTTGAAAATTAACTGTATGATGAGCCCCATGATGAgttagtgttgttgtttttgttgcaatgACAACCTGATAGTTGATTGGATTGAACAAAatatatctggaaatgtgcagtTTTTCCTTTATCCTGCATTATCAATAAAATACATAAGAAAATA

Function

NR:

description
uncharacterized protein LOC110491503 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564999.2 False 1576 mRNA 0.43 6 18434185 18437177
XM_021564997.2 False 1682 mRNA 0.43 7 18434185 18437178
XM_021564998.2 True 1703 mRNA 0.43 7 18434185 18437208

Neighbor

gene id symbol gene type direction distance location
prr15lb atd4b coding downstream 10943 18417572 ~ 18423242 (-)
mrpl10 mrpl10 coding downstream 22097 18409775 ~ 18412088 (-)
LOC100136345 osbpl7 coding downstream 24951 18396477 ~ 18409234 (-)
pdk2a LOC106579320 coding downstream 192075 18231526 ~ 18242110 (-)
LOC110491495 LOC106579322 coding downstream 207266 18223484 ~ 18226919 (-)
cbx1b cbx1 coding upstream 10708 18447916 ~ 18457521 (-)
LOC110491502 skap1 coding upstream 39869 18477077 ~ 18512413 (-)
hoxb1b hoxb1 coding upstream 85245 18522453 ~ 18525045 (-)
LOC110491505 hoxb3 coding upstream 87998 18525206 ~ 18550690 (-)
LOC110491507 hoxb5 coding upstream 104040 18541248 ~ 18543472 (-)
G1348778 NA non-coding downstream 42017 18390771 ~ 18392168 (-)
G1348804 NA non-coding downstream 43662 18390246 ~ 18390523 (-)
G1348800 tbx21 non-coding downstream 53773 18379533 ~ 18380412 (-)
G1348784 NA non-coding downstream 99642 18334328 ~ 18334543 (-)
G1348689 NA non-coding downstream 235077 18198801 ~ 18199108 (-)
G1348858 NA non-coding upstream 77270 18514478 ~ 18514714 (-)
G1349314 NA non-coding upstream 96346 18533554 ~ 18533859 (-)
G1349317 NA non-coding upstream 100868 18538076 ~ 18538335 (-)
LOC110491477 psme3 other downstream 1042231 17389099 ~ 17394265 (-)
G1347343 NA other downstream 1238056 17195330 ~ 17196129 (-)
G1347067 NA other downstream 1504753 16924522 ~ 16929432 (-)
G1345561 NA other downstream 2734922 15698985 ~ 15699263 (-)
G1349366 NA other upstream 196823 18634031 ~ 18634405 (-)
LOC110491541 LOC106579266 other upstream 883662 19310970 ~ 19325094 (-)
G1349896 NA other upstream 1023833 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 1254484 19691616 ~ 19697840 (-)
LOC110491567 LOC106579249 other upstream 1893192 20330400 ~ 20334029 (-)

Expression


Co-expression Network