cbx1b (cbx1)


Basic Information

Item Value
gene id cbx1b
gene name cbx1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18447916 ~ 18457521 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565002.2
acagtcgCCATTTTCCCTTCATGATAAATGTTACAGCACCGACATTTTTGACTTTATTAGCTAAAATATTATGGACAGGAGGAAATCATACACATTTAGTAGAAAATGTTGTGTTAAAATCGAACATGTTCTAACGGGAGCGGACATATACCGCGTTGGTACACTCACTGAGCAGATCGGCCGACTAGCTAATCTCTAAATCATCTGAGACACCTACATGAGATAACTTTGGTTACGTTGGGAAATCCACACAATGTAGAATCGATGCACGTGTACAAAGAATTTTTGAGATCGGAGACGAAGGGGGCGGACACGATATTTAGCTTACACAAGCTCATATTTGATTGATAATAAACTAAACACATTTATAAGAAATTATAACCCATATTATTTTGCTAATAATATAAACATTTGAAAACAGACACTGTTTTTCCTCTTGAAATACTCGTTTTGAGGAACCAACTGCTGGTCCCACGGTCTACCTGATGAGTATGAGCGAGTCTACAGAACCTTCTAATGATGCTCCCACTCTCACTGAAGCCCCCACCCAGTCTCAGGTGACGATGACAACGCCGGCTGAGAAGAAGGCAGAGGATGTGGTGCccgtggaggaagaggaggaggaagaagaataTGTGGTGGAAAAGGTCTTGAATCGAAGAGTAGTGAAAGGAAGAGTGGAGTACCTTCTCAAGTGGAAAGGCTTTTCGGATGACGACAACACATGGGAACCAGAGGATAATTTGGATTGCCCCGACCTGATTGCACAGTTTCTGCAGAAACAGAAATCGGCCCATGAGTCTGTGGGTAAGAGGAAGTCTGCAGAGACcagtgtggaaggagaggaaAGTCGACCCAAGAAGAGAAAAGATGACCCAGAGAAACTAAGGGGCTTCGCTCGAGGTTTGGATCCAGAAAGGATTATTGGTGCCACTGACTCCACTGGAGAACTCATGTTCCTCATGAAATGGAAAAACTCTGATGAAGCAGACCTGGTACCCGCTAAGGAGGCAAACGTGAAGTGTCCACAGGTGGTCATATCCTTCTACGAGGAGCGGCTTACGTGGCACTCTTACCCCACCGAGGAGAAGGAGGACGACAAGAACTAGCCGTTTGGTGTCAAGCTGGTTCTGAAGACTATAGAGGTAGTGCAAGGGCATATGGGTTCTAGGCAGAGGGTCTGAAAAAGCAAGATAGCATTTGGACTCCCTTTTGGCTTAATATCACCCATCAGGTTAAACTCTTATCTGGATATGATCAGTCAATACAGGCTATGGGTTATCTTGAGGAAACACAACCCTGGAAGAAATATATAATGCAGTGTTAATTTTTAAAGATTCACTTCAGTGATGGTTTATTTGGATACTAAAAGATCATTTTCACACTGCACCCTTGATTAAGAGGTCCAGACCTTTTTGCTATGACATTACTGTATAGGCTGGTGGAGATGTTATCATTCATAGTGTTGTGAACAAGAGAACAGTGCCATTTTGTCTTTTAACGTAAATGTTTTGTAGCGTTTAGTGCAAAACGATGTTAATCTGTGCTCATTTTGTGACGGTTTTATTCGTGTATTAAGGTGACTTGTTGAAAACCATATCTTTTTACTTTGCTCATTCATCCATATTATCATTCTAACATTTTCATAAACAGAACTTGCTTGTCTGTTTTTGGAGAATAAACAACTTTTTGTTACA
>XM_021565000.2
aacagtcgCCATTTTCCCTTCATGATAAATGTTACAGCACCGACATTTTTGACTTTATTAGCTAAAATATTATGGACAGGAGGAAATCATACACATTTAGTAGAAAATGTTGTGTTAAAATCGAACATGTTCTAACGGGAGCGGACATATACCGCGTTGGTACACTCACTGAGCAGATCGGCCGACTAGCTAATCTCTAAATCATCTGAGACACCTACATGAGATAACTTTGGTTACGTTGGGAAATCCACACAATGTAGAATCGATGCACGTGTACAAAGAATTTTTGAGATCGGAGACGAAGGGGGCGGACACGATATTTAGCTTACACAAGCTCATATTTGATTGATAATAAACTAAACACATTTATAAGAAATTATAACCCATATTATTTTGCTAATAATATAAACATTTGAAAACAGACACTGTTTTTCCTCTTGAAATACTCGTTTTGAGGAACCAACTGCTGGTCCCACGGTCTACCTGATGAGTATGAGCGAGTCTACAGAACCTTCTAATGATGCTCCCACTCTCACTGAAGCCCACATTACCCCTGCATCTGCAGACAACATTTCCCCTGCACCTGCAGACAACATTTCCCCTGCACCTGCAGACATCAATCCCCCTGCACCTGCAGACATCAATCCCCCTGCACCTGCAGACATCAATCCCCCTGCACCTGCAGACATCAATCCCTCTGCACCTGCAGACATCATTCCCCCTGCACCCACAGCCCCCACCCAGTCTCAGGTGACGATGACAACGCCGGCTGAGAAGAAGGCAGAGGATGTGGTGCccgtggaggaagaggaggaggaagaagaataTGTGGTGGAAAAGGTCTTGAATCGAAGAGTAGTGAAAGGAAGAGTGGAGTACCTTCTCAAGTGGAAAGGCTTTTCGGATGACGACAACACATGGGAACCAGAGGATAATTTGGATTGCCCCGACCTGATTGCACAGTTTCTGCAGAAACAGAAATCGGCCCATGAGTCTGTGGGTAAGAGGAAGTCTGCAGAGACcagtgtggaaggagaggaaAGTCGACCCAAGAAGAGAAAAGATGACCCAGAGAAACTAAGGGGCTTCGCTCGAGGTTTGGATCCAGAAAGGATTATTGGTGCCACTGACTCCACTGGAGAACTCATGTTCCTCATGAAATGGAAAAACTCTGATGAAGCAGACCTGGTACCCGCTAAGGAGGCAAACGTGAAGTGTCCACAGGTGGTCATATCCTTCTACGAGGAGCGGCTTACGTGGCACTCTTACCCCACCGAGGAGAAGGAGGACGACAAGAACTAGCCGTTTGGTGTCAAGCTGGTTCTGAAGACTATAGAGGTAGTGCAAGGGCATATGGGTTCTAGGCAGAGGGTCTGAAAAAGCAAGATAGCATTTGGACTCCCTTTTGGCTTAATATCACCCATCAGGTTAAACTCTTATCTGGATATGATCAGTCAATACAGGCTATGGGTTATCTTGAGGAAACACAACCCTGGAAGAAATATATAATGCAGTGTTAATTTTTAAAGATTCACTTCAGTGATGGTTTATTTGGATACTAAAAGATCATTTTCACACTGCACCCTTGATTAAGAGGTCCAGACCTTTTTGCTATGACATTACTGTATAGGCTGGTGGAGATGTTATCATTCATAGTGTTGTGAACAAGAGAACAGTGCCATTTTGTCTTTTAACGTAAATGTTTTGTAGCGTTTAGTGCAAAACGATGTTAATCTGTGCTCATTTTGTGACGGTTTTATTCGTGTATTAAGGTGACTTGTTGAAAACCATATCTTTTTACTTTGCTCATTCATCCATATTATCATTCTAACATTTTCATAAACAGAACTTGCTTGTCTGTTTTTGGAGAATAAACAACTTTTTGTTACA
>XM_036946374.1
aaacagtcgCCATTTTCCCTTCATGATAAATGTTACAGCACCGACATTTTTGACTTTATTAGCTAAAATATTATGGACAGGAGGAAATCATACACATTTAGTAGAAAATGTTGTGTTAAAATCGAACATGTTCTAACGGGAGCGGACATATACCGCGTTGGTACACTCACTGAGCAGATCGGCCGACTAGCTAATCTCTAAATCATCTGAGACACCTACATGAGATAACTTTGGTTACGTTGGGAAATCCACACAATGTAGAATCGATGCACGTGTACAAAGAATTTTTGAGATCGGAGACGAAGGGGGCGGACACGATATTTAGCTTACACAAGCTCATATTTGATTGATAATAAACTAAACACATTTATAAGAAATTATAACCCATATTATTTTGCTAATAATATAAACATTTGAAAACAGACACTGTTTTTCCTCTTGAAATACTCGTTTTGAGGAACCAACTGCTGGTCCCACGGTCTACCTGATGAGTATGAGCGAGTCTACAGAACCTTCTAATGATGCTCCCACTCTCACTGAAGACATCAATCCCCCTGCACCTGCAGACATCAATCCCCCTGCACCTGCAGACATCAATCCCCCTGCACCTGCAGACATCAATCCCTCTGCACCTGCAGACATCATTCCCCCTGCACCCACAGCCCCCACCCAGTCTCAGGTGACGATGACAACGCCGGCTGAGAAGAAGGCAGAGGATGTGGTGCccgtggaggaagaggaggaggaagaagaataTGTGGTGGAAAAGGTCTTGAATCGAAGAGTAGTGAAAGGAAGAGTGGAGTACCTTCTCAAGTGGAAAGGCTTTTCGGATGACGACAACACATGGGAACCAGAGGATAATTTGGATTGCCCCGACCTGATTGCACAGTTTCTGCAGAAACAGAAATCGGCCCATGAGTCTGTGGGTAAGAGGAAGTCTGCAGAGACcagtgtggaaggagaggaaAGTCGACCCAAGAAGAGAAAAGATGACCCAGAGAAACTAAGGGGCTTCGCTCGAGGTTTGGATCCAGAAAGGATTATTGGTGCCACTGACTCCACTGGAGAACTCATGTTCCTCATGAAATGGAAAAACTCTGATGAAGCAGACCTGGTACCCGCTAAGGAGGCAAACGTGAAGTGTCCACAGGTGGTCATATCCTTCTACGAGGAGCGGCTTACGTGGCACTCTTACCCCACCGAGGAGAAGGAGGACGACAAGAACTAGCCGTTTGGTGTCAAGCTGGTTCTGAAGACTATAGAGGTAGTGCAAGGGCATATGGGTTCTAGGCAGAGGGTCTGAAAAAGCAAGATAGCATTTGGACTCCCTTTTGGCTTAATATCACCCATCAGGTTAAACTCTTATCTGGATATGATCAGTCAATACAGGCTATGGGTTATCTTGAGGAAACACAACCCTGGAAGAAATATATAATGCAGTGTTAATTTTTAAAGATTCACTTCAGTGATGGTTTATTTGGATACTAAAAGATCATTTTCACACTGCACCCTTGATTAAGAGGTCCAGACCTTTTTGCTATGACATTACTGTATAGGCTGGTGGAGATGTTATCATTCATAGTGTTGTGAACAAGAGAACAGTGCCATTTTGTCTTTTAACGTAAATGTTTTGTAGCGTTTAGTGCAAAACGATGTTAATCTGTGCTCATTTTGTGACGGTTTTATTCGTGTATTAAGGTGACTTGTTGAAAACCATATCTTTTTACTTTGCTCATTCATCCATATTATCATTCTAACATTTTCATAAACAGAACTTGCTTGTCTGTTTTTGGAGAATAAACAACTTTTTGTTACA

Function

symbol description
cbx1 Enables histone methyltransferase binding activity. Involved in cellular response to DNA damage stimulus. Located in chromosome; nucleus; and spindle. Colocalizes with chromosome, telomeric region. Biomarker of prostate cancer.

NR:

description
chromobox protein homolog 1 isoform X2

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K11585 CBX1, HP1B, SWI6; chromobox protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565002.2 False 1697 mRNA 0.42 6 18447916 18457519
XM_021565000.2 False 1890 mRNA 0.43 6 18447916 18457520
XM_036946374.1 True 1819 mRNA 0.43 6 18447916 18457521

Neighbor

gene id symbol gene type direction distance location
si:ch211-194k22.8 LOC106579386 coding downstream 10708 18434185 ~ 18437208 (-)
prr15lb atd4b coding downstream 24674 18417572 ~ 18423242 (-)
mrpl10 mrpl10 coding downstream 35828 18409775 ~ 18412088 (-)
LOC100136345 osbpl7 coding downstream 38682 18396477 ~ 18409234 (-)
pdk2a LOC106579320 coding downstream 205806 18231526 ~ 18242110 (-)
LOC110491502 skap1 coding upstream 19556 18477077 ~ 18512413 (-)
hoxb1b hoxb1 coding upstream 64932 18522453 ~ 18525045 (-)
LOC110491505 hoxb3 coding upstream 67685 18525206 ~ 18550690 (-)
LOC110491507 hoxb5 coding upstream 83727 18541248 ~ 18543472 (-)
LOC110491508 hoxb6ba coding upstream 86443 18543964 ~ 18546172 (-)
G1348778 NA non-coding downstream 55748 18390771 ~ 18392168 (-)
G1348804 NA non-coding downstream 57393 18390246 ~ 18390523 (-)
G1348800 tbx21 non-coding downstream 67504 18379533 ~ 18380412 (-)
G1348784 NA non-coding downstream 113373 18334328 ~ 18334543 (-)
G1348689 NA non-coding downstream 248808 18198801 ~ 18199108 (-)
G1348858 NA non-coding upstream 56957 18514478 ~ 18514714 (-)
G1349314 NA non-coding upstream 76033 18533554 ~ 18533859 (-)
G1349317 NA non-coding upstream 80555 18538076 ~ 18538335 (-)
LOC110491477 psme3 other downstream 1055962 17389099 ~ 17394265 (-)
G1347343 NA other downstream 1251787 17195330 ~ 17196129 (-)
G1347067 NA other downstream 1518484 16924522 ~ 16929432 (-)
G1345561 NA other downstream 2748653 15698985 ~ 15699263 (-)
G1349366 NA other upstream 176510 18634031 ~ 18634405 (-)
LOC110491541 LOC106579266 other upstream 863349 19310970 ~ 19325094 (-)
G1349896 NA other upstream 1003520 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 1234171 19691616 ~ 19697840 (-)
LOC110491567 LOC106579249 other upstream 1872879 20330400 ~ 20334029 (-)

Expression


Co-expression Network