LOC110491502 (skap1)


Basic Information

Item Value
gene id LOC110491502
gene name skap1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18477077 ~ 18512413 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564996.2
GAAATTCTTATTTTGCATTGGATGCATGCACGGAAATAGTTTTTGTAACAAAAGTGTACAGGTGTTGCATGAGTGTATTAGTATAGTGTGTGAGTATCCACATGCTTTCATTTCAAGCAGGGAACTGTTACAATATGACTGGAGTCCGGTCTACACAGATTCCATAACTTTTCAAAAAGTATAGTTTTGATTGACTTTATCAACATTTGTCTGAAAATTCCTCTGGCACTTTGATGGAAGGATGGGGACAGTCTCTGAAGAAGTTAGGAGGCTTTTGAATGACTGTGAGCTGTTTGTATCAGATATCCTACAGGATGAGAACCTCAGTAAACATGCCAGGGAAACACGGGACGTCCTACTTAATAACTTCAGGGTGATCTACTCCAGAAATCCTCAGGCGTTTCCCTTCAGATCTGAGTCCAGACAGGAGGACAGTTCAGATGACAACCAGAGCTCCAGTCTGGGCCGCTCGGCCCCCTCAGAAGACCTGTCAGTGGCCTCTGACTACCAGGACGAGGGCTCTCCCGAATACTTTGAGGAGATCCAAATGGTGGCAGCCCAGGATCTCAGCAACATCTTGAAACAAGGCTACCTGGAGAAGAAACGACAAGATCACAGCTTCTTCAGCTTAGAATGGCAAAAGCGATGGTGTGTCCTCAAAAACACAATATTCTACTACTTTGGGAGTGACAAAGacaagcaGCAGAAGGGCGCCTTCTATATCAAGGGTTACAGTGCAGAGATGGTGGCCAACCTACGTAAAGACTCCAAGAAAAATGCCTGCTTTGAGCTGAGTGCCCCTGGCCGACACTCCTTCCAGTTCACTGCTAGCAGTGTGCGAGAAGCCATGGAATGGGTGGACCAGATCAACTTTGTCCTGAAAGATTTGAGTTCCAGCTTTATCCCCTTTGAGGATGAGACCTATGATGACATTGAGGGGGTGACGGGGGTGGCCAGCCGTCCCCCTTGGCCCGCCCCCTACCCGGTCCTGCCCCAGCAGGTCAAAGCCTCTCtcagtagccaggaggaagggaAGCCCAGCCAGTGGGAGGAACAGGAAAAGGATGATATCTACGAGGTGCTCCCAGAGGATGACATTCCAGGATCCATTGAGGAGATCAGTGAGAAGAGCACGAACCCAGTGTGGTCCATAGACTATGCCAATTACTACCAGGGCTTGTGGGACTGTGAGGCAGACGAGCCTGACGAGCTGGCCTTCCAAAGAGGTGACCTCATCTACATCGTCAGTAAGGAGTATAACATCAATGGCTGGTGGGTCGGAGAGCTAAACGGAACCGTCGGTATTGTCCCTAAAGACTTCCTCCATCCTGCCTACATCCTCTGAGCTCCCAAGAGGTGGAACGACACTCACCCCGTTTGTTCAAGCTGAACCCAGAAACCCGCCCCACAACAGCAACACAGAATGCCTAAGGATGACACTTTTCCACCCCAGAACTTATGAATAAAACACAGTCAAAGTGGATTGCATGA
>XM_021564995.2
AAATTCTTATTTTGCATTGGATGCATGCACGGAAATAGTTTTTGTAACAAAAGTGTACAGGTGTTGCATGAGTGTATTAGTATAGTGTGTGAGTATCCACATGCTTTCATTTCAAGCAGGGAACTGTTACAATATGACTGGAGTCCGGTCTACACAGATTCCATAACTTTTCAAAAAGTATAGTTTTGATTGACTTTATCAACATTTGTCTGAAAATTCCTCTGGCACTTTGATGGAAGGATGGGGACAGTCTCTGAAGAAGTTAGGAGGCTTTTGAATGACTGTGAGCTGTTTGTATCAGATATCCTACAGGATGAGAACCTCAGTAAACATGCCAGGGAAACACGGGACGTCCTACTTAATAACTTCAGGGTGATCTACTCCAGAAATCCTCAGGCGTTTCCCTTCAGATCTGAGTCCAGACAGGAGGACAGTTCAGATGACAACCAGAGCTCCAGTCTGGGCCGCTCGGCCCCCTCAGAAGACCTGTCAGTGGCCTCTGACTACCAGGACGAGGGCTCTCCCGAATACTTTGAGGAGATCCAAATGGTGGCAGCCCAGGATCTCAGCAACATCTTGAAACAAGGCTACCTGGAGAAGAAACGACAAGATCACAGCTTCTTCAGCTTAGAATGGCAAAAGCGATGGTGTGTCCTCAAAAACACAATATTCTACTACTTTGGGAGTGACAAAGacaagcaGCAGAAGGGCGCCTTCTATATCAAGGGTTACAGTGCAGAGATGGTGGCCAACCTACGTAAAGACTCCAAGAAAAATGCCTGCTTTGAGCTGAGTGCCCCTGGCCGACACTCCTTCCAGTTCACTGCTAGCAGTGTGCGAGAAGCCATGGAATGGGTGGACCAGATCAACTTTGTCCTGAAAGATTTGAGTTCCAGCTTTATCCCCTTTGAGGATGAGACCTATGATGACATTGAGGGGGTGACGGGGGTGGCCAGCCGTCCCCCTTGGCCCGCCCCCTACCCGGTCCTGCCCCAGCAGGTCAAAGCCTCTCtcagtagccaggaggaagggaAGCCCAGCCAGTGGGAGGAACAGGAAAAGGATGATATCTACGAGGTGCTCCCAGAGGATGACATTCCAGGATCCATTGAGGAGATCAGTGAGAAGAGCACGAACCCAGTGTGGTCCATAGACTATGCCAATTACTACCAGGGCTTGTGGGACTGTGAGGCAGACGAGCCTGACGAGCTGGCCTTCCAAAGAGGTGACCTCATCTACATCGTCAGTAAGGAGTATAACATCAATGGCTGGTGGGTCGGAGAGCTAAACGGAACCGTCGGTATTGTCCCTAAAGACTTCCTCCATCCTGCCTACATCCTCTGAGCTCCCAAGAGTTGAGTGATGTGACTGACTACATTCTCAATCCCCAACACCGAACACTTCGAGATTGATGACAGATTGACCTTTTCTATTATTTCGTAATATAGCGTTATGCTGTTAGTGTCATTGTTGTTGTATGTTTTTGTAACAATATGCTTCATTTCCATGCATAAATTACATTACCATGGTTCTTTTGAGGCGATTGGTGTATACATCAAATTCTGGATAATGCTGATGTCGCAAAAAGGTTTCCTCTGTTCAATTGTTTCCAATGTATTTGTGCCCATGTGTGTGAATGGAAATTGCCAGACATTGAGGAAACATTATGCCCCTGTGACAAAAATAGGAAATCCTCACCTCTGGTGAACTGGGGGGCTGTCTATTCCATATTATGAAGCATACGAACTGGTGCCTTCAACAGCCTTGTGTCTGAGGCTACAGTGCTTGTTATTTTGATGCTGACTTCAAATATGTAGGCCACAAGGGGTCAGGCATGCTCCCTGGTGCGATTTAATTATTTTTAATTAATCTAATTAATTAAGTGTTTGAAATTGGAATACCTGATCATTTGCAATAAgaaaacatatttatttttgaGCCTGTAAAAATATTGTTAGATATTTAAATTCCACAATATGATGTACATAAGAACTTGTTTGACTGTGCATATGAAAGTCTATGGCAATATAAATGTCTGGAAACGAAAgaaacacctatttaggcgaggtgctggcttaAATAAATGTTGAAATGTAATGCACTAAAATAGACTCAGATGCAAAGTACAGGTGGGGGAAAAAACTACAGTGCCCTCCGCtaatattggcacccttggtaAATATGAGCAAAACTGGCTGTgaaagaaatgtctttgtttatcctcttggtctttcattcaaaatattcacaaaaatctatcatttaattaaagtaaaataattgaaaataagaaaataaattcataaaacaaatatttttctaAAATATATGTCTGCCTCAATTATTGGAACCCCTTCATTCAATAATTTGTGCAACCTCCCTTTGACAAGATAACTGCTCTTAACTGATAACTGAGTCTTGTCCTATAATGCATAATGAGGTTGGAGAACACATGGTAAGGGATCAGAatctctccagatccttcagattcCGTGGTACATGCTTGTGGACTCTCCTCTTCAGCTGACACGGCAAGGTTTTCTATGGGGTTTAGGTTGTGGATTGGGATGGCCATGGCAAAACCTTGACTCTGTGGttagtgaaccttttttgtgttGAGGTgtgctttggatcattgtcctgctggatgaTCCAACCACGGCCCAGTTTAAGCTTTCTAGCAGATGCAGTCAGGTTTTGAtttaatattttttacatttaacctttatttaactaggtaagtcagttaagaacaaattcttattttacaatgatggcttaccccagccaaaacctcccctagcacggatgacactgggccaattgtgcgccgccctatgggactcccaatcatggccggttgggATACAGCCCGGGATCTGTTGTGACGCCTCTAACAAACTGTAGGCGCTTGGGTTTGTTGTTTGATGACAGCAAATGCCTTTTTTCTATGGCAACCATCCCAAACAACTTGTGGTTACGTAGGTGGCGTCTGATTGTGGTTTTGGAGAATTTCTGACCCCAAGACCCAACTAATGTCTGCAATTCTCCAGCTGTGATCCTTGGAGATTTTTTGGCCACTCGAACCATCCTCCTCACTGTGTTTGGGGTCAATATAGACATGCGTCCTCTTCCAGGCCGATTGTTAACATCTCCAGTTGCTTTAAACTTCAGTTAGATTTTACTCATAAGAATTtctaggggtgccaataattctgACACGTTTCAGAGTAAAATATTTCAATCATTTTACTTAGATTTTTGTGAATATTTTGAAAGGCAGACATTTTTTCACAGCCCGTTTTGCTCATATTtaccaagggtgccaatattaGTGGAGGGCACTAACATTTTATTTCCAAGTACAATTATATTCCACAGAAATATTGTCATCAATAGGTGCATTCCTagtttatttttgactatttttagGTAGGTATATTGCCCTTGTACATCCTTATATGAACTACCTAAGTGGAAAAAACTGTCTGGTAATCATCTACATAACATAAAAGGGGTACTTCCAACAACTGCTATGCCACTTAAATAAACTAATGCACTGTTAAAAGGCTGAATATGAGAACAAACATCCCCAACATTGCAAAACACTGTACAGTGTGTTTGGGACTTTTACCATTGAAGACAATTAGACCATAACATTGAAACCAGTAGAACTGCTGTAGCCTGATGGTTTGCTTTTTCAACAGGGATGTTCTAACTAATCCAGACCTTTTCTGAAGGGAATAAACCACACACACGGTTCATtttctggacacagatt

Function

symbol description
skap1 Predicted to be active in cytoplasm and plasma membrane. Orthologous to human SKAP1 (src kinase associated phosphoprotein 1).

NR:

description
src kinase-associated phosphoprotein 1

GO: NA

KEGG:

id description
K17699 SKAP1, SKAP55; src kinase associated phosphoprotein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564996.2 False 1491 mRNA 0.49 13 18477077 18512413
XM_021564995.2 True 3781 mRNA 0.42 13 18477670 18512412

Neighbor

gene id symbol gene type direction distance location
cbx1b cbx1 coding downstream 19556 18447916 ~ 18457521 (-)
si:ch211-194k22.8 LOC106579386 coding downstream 39869 18434185 ~ 18437208 (-)
prr15lb atd4b coding downstream 53835 18417572 ~ 18423242 (-)
mrpl10 mrpl10 coding downstream 64989 18409775 ~ 18412088 (-)
LOC100136345 osbpl7 coding downstream 67843 18396477 ~ 18409234 (-)
hoxb1b hoxb1 coding upstream 10040 18522453 ~ 18525045 (-)
LOC110491505 hoxb3 coding upstream 12793 18525206 ~ 18550690 (-)
LOC110491507 hoxb5 coding upstream 28835 18541248 ~ 18543472 (-)
LOC110491508 hoxb6ba coding upstream 31551 18543964 ~ 18546172 (-)
LOC110492883 hoxb8ba coding upstream 38782 18551195 ~ 18552971 (-)
G1348778 NA non-coding downstream 84909 18390771 ~ 18392168 (-)
G1348804 NA non-coding downstream 86554 18390246 ~ 18390523 (-)
G1348800 tbx21 non-coding downstream 96665 18379533 ~ 18380412 (-)
G1348784 NA non-coding downstream 142534 18334328 ~ 18334543 (-)
G1348689 NA non-coding downstream 277969 18198801 ~ 18199108 (-)
G1348858 NA non-coding upstream 2065 18514478 ~ 18514714 (-)
G1349314 NA non-coding upstream 21141 18533554 ~ 18533859 (-)
G1349317 NA non-coding upstream 25663 18538076 ~ 18538335 (-)
LOC110491477 psme3 other downstream 1085123 17389099 ~ 17394265 (-)
G1347343 NA other downstream 1280948 17195330 ~ 17196129 (-)
G1347067 NA other downstream 1547645 16924522 ~ 16929432 (-)
G1345561 NA other downstream 2777814 15698985 ~ 15699263 (-)
G1349366 NA other upstream 121618 18634031 ~ 18634405 (-)
LOC110491541 LOC106579266 other upstream 808457 19310970 ~ 19325094 (-)
G1349896 NA other upstream 948628 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 1179279 19691616 ~ 19697840 (-)
LOC110491567 LOC106579249 other upstream 1817987 20330400 ~ 20334029 (-)

Expression


Co-expression Network