hoxb1b (hoxb1)


Basic Information

Item Value
gene id hoxb1b
gene name hoxb1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18522453 ~ 18525045 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565005.2
AGTATACGCAATAATACATTGTTAAAAGTCCATAAAGGCACAATGATTTAGGCTGTTCTTTGTTCTCTCTCGAGCAAATTGGAGAACCAGCTGTCAAGCGTTTAGAGGAGCAGAAGATTGATCGTCGCATTAATTTCAAGACTCCTCTGTAAAATTAGCTCTCAGACGGAAGAACACGCCGAGCTAATCAAGTAATTCACATGAGCTGCTATACTTATACACATTGGGCAACATAATTCTCATAGAGAACGTCTGGTATTATACACCAATCGTATATCCTCTTGTTAACTGCATGAATGACAATGGAAACATTTCAGTTCACTAAACTTACTTACTCTTATAATACTGTTAAAAAAGCACAGCCAAAATACTATTTCGATCACATAGACCATCCAAATCAACTGTTTGCTTCAAACTCTAAATTTTCGAGAGACAAAATTGAAATAATTTTAAAATCTTTCACTTTTTCAGACTATCATTCTCCCTCAGTCTGACCAGAAGGTCCTTGCAGAAGTGGTGTGACGTGTTTCTGTTCTTATCAGATTGATGGGCGAGTTTGACTGAAGCATTTGTCATGTAAATGTGAGACGTTTGATGGACGATCCTGACCTGACAAACTGCTATAGGTCCCAATTGCCATTGGCGTAAAGTGAGTCACATGGTCTGTCACTAAGGTGATATGAGCGTGGTAGGCAGTTTTACAGATTTGACATACTACCTAGAGGTTGTAGGGCACAGGGAAGAGCAATTAAGGTGGACTGACCCGTCTTCATTAATTTTGCCATAACAATACAGGATGAACTCTTACTTAGATTATACCATTTGTAACAGGGGGACTAACATATTCAATGCCAATGCCGGACACCACAATTTAAACCATGGATACAGGTCCTCCTTATCTTCCAATTCATGCTCAACAAGTGATAGTTTTGTGTCCGATGGGCGGTTAGTTGGTGGTTCTTCGGTGCACCAGACTTCGAGCCACCCTCTGCACCAGCCCCAGCTACATCATATAGATCTCCAGTTTGGCTCAACGGGAAACTTGGTGTATGGCTCGCCAACAGGGCCAAACTTGGATTATGGACCTCATCAATACGCTCTAATTCATGAACAAGAACGAGGTTTCATTCAGTCGCCTGGGATTCCTGTGTCAGCCATTGGAACGAACATGCCCCCCCTGGCCGAAGGGAACAGTGAGCCCCTGGCCGAAGGGAACAGTGAGCCAGGGTCTGCAGCAAGCAGCCAGTATCTGCACTTTTGCAGTGGAGAACAGGGGCAACCAGAATACTTGGAGAGTATTTACTCGAGATTAGTTCCTTTCCAATATAGTGATAAGGATTCGGATGATTTCAATGCAGATTTAACTTCAAAAACTTTCGACTGGATGAAAGTTAAGAGGAATCCCCCTAAAACAGTTTCAGAGTATGGAGTCCCCGGTCAACAGAATGTAATCCGTACCAACTTCAACACAAAGCAGCTGACAGAGCTCGAGAAGGAGTTCCATTTCAACAAGTACCTGACCAGGGCCCGGAGAGTGGAAGTTGCCGCTATTCTCGAGCTCAACGAAACTCAAGTGAAAATTTGGTTCCAAAACCGCAGGATGAAGCAGAAAAAGCGTGAGAAAGCAGGAACCATCTTTCGAAACACAGCAGTACCGGCAAATGATTTGGGAGAGATCACCTCATCTCCTGATGTGTCGCCAAGCTCGAAGACCGCATAAAGCAATCGTTttacaaataacatttgaattaCCGCACTCATGGTGCTGCACTTTACTTGTCACATTTTCAAGGATACTGCAGGTTTACAGGGTTTAGGTGCACTAATTTCTGCAAACAATTTAGTTTCATGTTTGCACTATTTACGGGTATTTTCTACAAATACATTTAGATAATTATGTGAGAAGTTAgaaataaaatgtttgttttgaaAAGTCTGTATTTTTGTGCTGATTTGTACATTTGTGAGTGAATGAAATGTTCCCATACAGTAGGCTATAAAGTATTTATTGAATGTGACAATAAGGATATGTTGTAAGAAAATCTAAATCTTTGGAGCTAATTGAATTCTTCTTCGATGTTCTTTCTACGCAAATAGTATTTTGGGAGTCAACATTGTTTAACTGTTGTTGAAACTGTTTTAAATCTGCCTACTCATGAAATTAGGAATCAGATGGAAAAATATGTAATTTTCATTGAAATGCAATTCATATTGACAATCACATATGACTGATTTCTAATAATAGTTTTTACAAAATTAAACTTTAACAAA
>TU1542009
TCACTAAGGTGATATGAGCGTGGTAGGCAGTTTTACAGATTTGACATACTACCTAGAGGTTGTAGGGCACAGGGAAGAGCAATTAAGGTGGACTGACCCGTCTTCATTAATTTTGCCATAACAATACAGGATGAACTCTTACTTAGATTATACCATTTGTAACAGGGGGACTAACATATTCAATGCCAATGCCGGACACCA

Function

symbol description
hoxb1 Enables DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and protein domain specific binding activity. Involved in positive regulation of transcription by RNA polymerase II. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565005.2 False 2271 mRNA 0.40 2 18522453 18525045
TU1542009 True 201 lncRNA 0.42 1 18524179 18524379

Neighbor

gene id symbol gene type direction distance location
LOC110491502 skap1 coding downstream 10040 18477077 ~ 18512413 (-)
cbx1b cbx1 coding downstream 64932 18447916 ~ 18457521 (-)
si:ch211-194k22.8 LOC106579386 coding downstream 85245 18434185 ~ 18437208 (-)
prr15lb atd4b coding downstream 99211 18417572 ~ 18423242 (-)
mrpl10 mrpl10 coding downstream 110365 18409775 ~ 18412088 (-)
LOC110491505 hoxb3 coding upstream 161 18525206 ~ 18550690 (-)
LOC110491507 hoxb5 coding upstream 16203 18541248 ~ 18543472 (-)
LOC110491508 hoxb6ba coding upstream 18919 18543964 ~ 18546172 (-)
LOC110492883 hoxb8ba coding upstream 26150 18551195 ~ 18552971 (-)
ttll6 LOC106579309 coding upstream 28131 18553176 ~ 18575510 (-)
G1348858 NA non-coding downstream 7739 18514478 ~ 18514714 (-)
G1348778 NA non-coding downstream 130285 18390771 ~ 18392168 (-)
G1348804 NA non-coding downstream 131930 18390246 ~ 18390523 (-)
G1348800 tbx21 non-coding downstream 142041 18379533 ~ 18380412 (-)
G1348784 NA non-coding downstream 187910 18334328 ~ 18334543 (-)
G1349314 NA non-coding upstream 8509 18533554 ~ 18533859 (-)
G1349317 NA non-coding upstream 13031 18538076 ~ 18538335 (-)
G1349329 NA non-coding upstream 31677 18556722 ~ 18557003 (-)
LOC110491477 psme3 other downstream 1130499 17389099 ~ 17394265 (-)
G1347343 NA other downstream 1326324 17195330 ~ 17196129 (-)
G1347067 NA other downstream 1593021 16924522 ~ 16929432 (-)
G1345561 NA other downstream 2823190 15698985 ~ 15699263 (-)
G1349366 NA other upstream 108986 18634031 ~ 18634405 (-)
LOC110491541 LOC106579266 other upstream 795825 19310970 ~ 19325094 (-)
G1349896 NA other upstream 935996 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 1166647 19691616 ~ 19697840 (-)
LOC110491567 LOC106579249 other upstream 1805355 20330400 ~ 20334029 (-)

Expression


Co-expression Network