LOC110491508 (hoxb6ba)


Basic Information

Item Value
gene id LOC110491508
gene name hoxb6ba
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18543964 ~ 18546172 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565007.2
GGTACAGTTCCCTTCTGTCCTATTGAGTGGCACCTCGCAAGCCCCCTTCAGCTAAAACCAAATCTCCGATAAAGTAATGGCAAAACCACTTGGACTATAAAACATTACAAATCATATTCCTCGGAGCATATTTGTCCATCCAATGAGTTCCTATTTTGTCAACTCAACTTTTCCTGCTTCTCTGCCCGGAGGACAGGAGTCTCTCCTCGCTCAGATACCTTTATATTCCTCCGGATATACTGACCCTTTAAGACACTTTTCCAACGCTACATATGGAGCTGCCAATATGCAAGAGAAGGTATACCCAACCTCATATTACCAGCAAACCACTGGTATCTACGGTCGCCCCAGCACCAGCGCTCCCTGCGACTATACAGCTGCCACTTTTTACAGTGACCGCTCGTGCGCTTTCGCAAATCGAGAGGAGCAGCCGCTCTTTTTAACTCAGGACCAGCGCAAGTCAGAGTGCCTCGAGCAGAATGTAAACATAACCACTGCTGTGGACGACAAGTCTTCTCTGCTTTATCCGTGGATGCAAAGGATGAATTCTTGCACCGCCGGGACATTGGGCAGCAGTGGACGCAGGGGCCGTCAGACCTATACTCGATACCAGACTCTTGAGCTCGAGAAAGAGTTCCATTTCAATAGGTATCTCACCAGGCGTCGTCGAATCGAGATTTCGCATGCTCTGTGTCTCACTGAACGTCAGATAAAGATTTGGTTCCAGAATCGCAGAATGAAGTGGAAAAAGGAGAACAAAGTTATGAATCCTTCGAAACCCAgcgatgaagaggaggaaaaaCAGACGGATTAAAAGACACTGAGTAAAAAAGCTACACAAGCCATCCTATAACTGTTGTACCATGAATTGAGAGATGTTAAATTATTGTTGGCTGTTGTTTTTCATAAAATGGCTGCCTAGGCCTACACATGTTTGTGAAAATATGTAAATAGGCCTACTAGATAAATATATTTGCACGATGAAATAACGTCTGTTGGTTAGAAACAGGTTAAAACCAACTGAAGCTGGCTAGCCTATTCTTATTTGATTGTGtttgtattttttgttttgtcaatATTGTTGCTTGAATGTAAAGTAGGGTTTACCACatccacaaagtcaaaattggctatatcgtaaaaatgtatgaaaacataaatgtggtcttaatttaaggttaggtagtgtggttaaggttagaagtGTGGTAAAGGTATAAATTCACATTTTAGGAAAATCAATTgcagaaataggcggggtttatgactttgtggttgTAGTAACTGATGACGATCGTGAAATAGGCCTACACTCGCACATACTTGTTTCCTGGAGCGGCGTTGGAGAAGTGCAAAAACAAGCCTAGTCAAAATACTCGATAATTAAATATTTTTgcttcaaaaatatttttttatggcCCCATTATCGATACAAGAGAGATGCTTTGGCCTAATAGCCTACCATAGTTTGTgttgtattttgtttgttttagGCTTTTACATCGCTTTGTCATATTCAACTGGATAATGTTTTCACAAGTTGTTTATTGTGCACTTGCCATCTGGATGTCGTGTGCAATATTATGTAAGACATGTTTTTGTTGTCTTTTGTAAATGCAAATAAAGCGTTGGTAATTTCTGTAAA

Function

NR:

description
homeobox protein Hox-B6b-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09305 HOX_5; homeobox protein HoxA/B/C5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565007.2 True 1645 mRNA 0.41 2 18543964 18546172

Neighbor

gene id symbol gene type direction distance location
LOC110491507 hoxb5 coding downstream 492 18541248 ~ 18543472 (-)
hoxb1b hoxb1 coding downstream 18919 18522453 ~ 18525045 (-)
LOC110491502 skap1 coding downstream 31551 18477077 ~ 18512413 (-)
cbx1b cbx1 coding downstream 86443 18447916 ~ 18457521 (-)
si:ch211-194k22.8 LOC106579386 coding downstream 106756 18434185 ~ 18437208 (-)
LOC110492883 hoxb8ba coding upstream 5023 18551195 ~ 18552971 (-)
ttll6 LOC106579309 coding upstream 7004 18553176 ~ 18575510 (-)
snf8 snf8 coding upstream 49479 18595651 ~ 18603129 (-)
LOC118939514 LOC106579307 coding upstream 58813 18604985 ~ 18606174 (-)
chmp2a LOC106579304 coding upstream 76461 18622633 ~ 18626440 (-)
G1349317 NA non-coding downstream 5629 18538076 ~ 18538335 (-)
G1349314 NA non-coding downstream 10105 18533554 ~ 18533859 (-)
LOC110491505 hoxb3 non-coding downstream 14202 18525206 ~ 18550690 (-)
G1348858 NA non-coding downstream 29250 18514478 ~ 18514714 (-)
G1349329 NA non-coding upstream 10550 18556722 ~ 18557003 (-)
G1349340 NA non-coding upstream 32382 18578554 ~ 18578786 (-)
G1349342 NA non-coding upstream 33119 18579291 ~ 18579519 (-)
G1349346 NA non-coding upstream 37614 18583786 ~ 18584017 (-)
prr15lb atd4b other downstream 120778 18417572 ~ 18423242 (-)
LOC110491477 psme3 other downstream 1152010 17389099 ~ 17394265 (-)
G1347343 NA other downstream 1347835 17195330 ~ 17196129 (-)
G1347067 NA other downstream 1614532 16924522 ~ 16929432 (-)
G1345561 NA other downstream 2844701 15698985 ~ 15699263 (-)
G1349366 NA other upstream 87859 18634031 ~ 18634405 (-)
LOC110491541 LOC106579266 other upstream 774698 19310970 ~ 19325094 (-)
G1349896 NA other upstream 914869 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 1145520 19691616 ~ 19697840 (-)
LOC110491567 LOC106579249 other upstream 1784228 20330400 ~ 20334029 (-)

Expression


Co-expression Network