LOC110492883 (hoxb8ba)


Basic Information

Item Value
gene id LOC110492883
gene name hoxb8ba
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18551195 ~ 18552971 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945852.1
cagtgtgtgcccagtgggttccctcgtctccctaccaccccctccctctgttggtttctCACACTTTGCATTCAAGCGCGAAATGCTTTGTCTGTTGTCTGGAGATTTTCGTTTGGAGACATCATCGTATCCAAAACAAGGCAGGATATACCCTGTGAAGCTATAATCCATATAGTCTGCCCGATCATTCATGGACTTCAGAGAGGTAGGCGATTGAATTGACATGGAAACGTTGGTCTTGACCGAGGAAAGTCATGCCTAAACTTAAAAAACCTTGCATTTATTCCATAAAGTGTAATATATGCTAGTAGCCTGACTTAAATAAGATTTTAAACATCAAAGTTGAAAATGAGCTCTTATTTCGTTAATGCTCTATTCTCAAAAAACAGCAACAGCGAGTCCTGGAATTCCGATTACGGTGGCACCATCCAGCAGCCACATCCCACGCAGTTAACGGTATTATACAATGGCACATCGTTGTTCAAAACCGCTCACCAACACCAACTAAATCCGTGCGTATTATCGCTGCCAATGGGCAACTTGTATCATACCCACGATGTGATACAGAGACCAACCTTTTACGCATCCCATAATAGGAATTGTATCCAGTACAGTGATTATCATTTGAAATCCACCGAGGTTGCAAATGATTCCGTGTGCGCAGAACAGTGCTCCTCTCTACCGGACCTCTTTCCCTGGATGAAACCACAAGTTACCGGACCGAGAAGAGGTAGACAGGCATACAGTCGCTTCCAGACTCTGGAACTTGAGAAGGAGTTCTTATTCAACTCTTACTTGACCCGCAAGCGCAAGGTTGAAGTGTCGCACGCTCTGGCACTCACCGAGCTGCAGATTAAAATCTGGTTTCAGAACAGACGCATGAAATGGAAGAAGGAGAACAAGAAGGACACATTTCCAATAAACAGGCCGGATCAGAATGAAATCAAGAAACAGAGCAAAGAAACTTACAAGAATATTCAGACGTCAGATGAGGAGGGTAAAGGTTAAGACTATCCTAGACTTGGTGATGGGATGCCACACAGTGATAACAAATGTGTTAATTATAAATTGTATTTCgaataaaaaaaatcaacaacAGTGAAATCTATTGTCTTAGTTGATAATTCATTATAAAATTAAATTCTATAAAACTTGAGAAGACGTGCGCAAAATAGTTTTTACGCACCATTGTACGCATCATTCCAATTAGAGGTTTGTGCATGTGAATCACTTCTGCAGAATAGTCTGAACAGGTGTTTATGTTGTTAGAATGTATAAGTATGTAATTTAGTGCAGTAAGGTAGCACAGCTGCCACACTTTCTGCCACTAATAATAATGATTCATCATTAGATGGcattccgagtggcgcagcagtctaaggcacggcatctcagtgctagaggcgtcactacagaacctttggttcgattccaggctgtatcacaaccggccgtcattggtagtcccatagggcagcgcacaa

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945852.1 True 1484 mRNA 0.43 2 18551195 18552971

Neighbor

gene id symbol gene type direction distance location
LOC110491505 hoxb3 coding downstream 505 18525206 ~ 18550690 (-)
LOC110491508 hoxb6ba coding downstream 5023 18543964 ~ 18546172 (-)
LOC110491507 hoxb5 coding downstream 7723 18541248 ~ 18543472 (-)
hoxb1b hoxb1 coding downstream 26150 18522453 ~ 18525045 (-)
LOC110491502 skap1 coding downstream 38782 18477077 ~ 18512413 (-)
ttll6 LOC106579309 coding upstream 205 18553176 ~ 18575510 (-)
snf8 snf8 coding upstream 42680 18595651 ~ 18603129 (-)
LOC118939514 LOC106579307 coding upstream 52014 18604985 ~ 18606174 (-)
chmp2a LOC106579304 coding upstream 69662 18622633 ~ 18626440 (-)
LOC110491515 LOC106579303 coding upstream 119370 18672341 ~ 18679390 (-)
G1349317 NA non-coding downstream 12860 18538076 ~ 18538335 (-)
G1349314 NA non-coding downstream 17336 18533554 ~ 18533859 (-)
G1348858 NA non-coding downstream 36481 18514478 ~ 18514714 (-)
G1349329 NA non-coding upstream 3751 18556722 ~ 18557003 (-)
G1349340 NA non-coding upstream 25583 18578554 ~ 18578786 (-)
G1349342 NA non-coding upstream 26320 18579291 ~ 18579519 (-)
G1349346 NA non-coding upstream 30815 18583786 ~ 18584017 (-)
prr15lb atd4b other downstream 128009 18417572 ~ 18423242 (-)
LOC110491477 psme3 other downstream 1159241 17389099 ~ 17394265 (-)
G1347343 NA other downstream 1355066 17195330 ~ 17196129 (-)
G1347067 NA other downstream 1621763 16924522 ~ 16929432 (-)
G1345561 NA other downstream 2851932 15698985 ~ 15699263 (-)
G1349366 NA other upstream 81060 18634031 ~ 18634405 (-)
LOC110491541 LOC106579266 other upstream 767899 19310970 ~ 19325094 (-)
G1349896 NA other upstream 908070 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 1138721 19691616 ~ 19697840 (-)
LOC110491567 LOC106579249 other upstream 1777429 20330400 ~ 20334029 (-)

Expression


Co-expression Network