snf8 (snf8)


Basic Information

Item Value
gene id snf8
gene name snf8
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18595651 ~ 18603129 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946381.1
TAGGTGACTGGTAGGGTCAGATAACaaccacagtggttatagagggtgcagcAGCATAAcacttcaggagtaaatgtcagttgggttTTCATCGTCAAGCAGCGccatactctaccaactgagcttaTGTATGTCAAAACAGCTGGAGACCTTCAAATCTAACCTTGAGGAATTTGCCAGCAAGCACAAACAAGAGATTCGTAAGAGTTCCCAGTTCCGGGTCCAGTTTCAGGAGATGTGTGCCACCATTGGAGTTGACCCACTTGCCTCTGGCAAAGGCTTTTGGTCTGAGATGCTTGGCGTGGGTGACTTCTATTACGAGCTGGGTGTGCAGATCATTGAAGTATGCCTGGCACTGAAACACAGAAATGGAGGACTTATTACCCTGGACGAACTGCATCACAGAGTGTTGAAGGGAAGGGGGAAATTTGCTCAGGATGTGAGCCAAGATGACTTGGTGCGGGCCATAAAGAAGCTGAAAGTCATGGGGAACGGCTTTGGGATGATTCCTGTTGGAGGCTCTTACCTCGTGCAGTCAGTGCCAGCAGAGCTCAACATGGACCACACTGTGGTACTTCAGCTGGCTGAGAAGAAGGGCTACGTTTCAGTGAGTGAGATCAGAGAGAGTCTTAAGTGGGAGCGAGAGCGAGCCTGTCATGTGCTGGATCACCTATTGAAAGAGGGCTTGGCGTGGTTGGATTCCCAAGCTTCTGGAGAGCCACAGTATTGGCTGCCAGCCCTCTTTTCTGAGCTGACTTCCCGTGATGTCACACCTGAGGAGGCCAATCAGATAACGCCTTAAGAAAGATAGGATTTTTGGTACGTGGGATGTCTCGGTAACTTCTTGAAGAACAATGTGTGCCTGTTGGGAAAGTCCTGAATTGAAATGGGGTGTATTTAACTTTTAAAGGGTAGGTACCAATTATGTATATAAATCATTGGTAGGTACACATGATGTTGCTTCCCTTCAGCAATTGTGGAGATGAAAACTAGGTTACAAATGTTGTTTTCTGTGGCAGTTGTCAATCAtggatttgttttttgtttttttaaatgtcattatATTCAATTTTCTTCTATTAAAACATTTTAGGATTTCTTGGCA
>XM_021565018.2
CCTCTCGTCAAACTCAGGAGGAAGTTACTTCCGGGTTCCTAAACTAAGCAAATAGACCTTGCTAGCTCTCAAGTTTCGCGAAATGAGTCGATTTCAAAGTTGTGTGCATAGAAATTATTATTGAATAAGAACGGAATGCTGAGAGCTATCATATGGCTGCAATAGGGTAAAAGCACCTCGCGACCTAACAAATTACTTTGACCGTGCAACTGGaaactacctagctagctaacgttagttggcaaGCATAACAATAGCGGTGTCAACTTTTTCATAGCTAGCTAGTCCTTTTTTTCACATCAACAAGATGCATAGGAGAGGAGTAGGTGCGGGAGCTATCGCCAAAAAGAAGCTTGCAGAGGCCAAGTATAAAGAGAGGGGGACAGTGTTAGCTGAGGATCAAATTGTTCAGATGTCAAAACAGCTGGAGACCTTCAAATCTAACCTTGAGGAATTTGCCAGCAAGCACAAACAAGAGATTCGTAAGAGTTCCCAGTTCCGGGTCCAGTTTCAGGAGATGTGTGCCACCATTGGAGTTGACCCACTTGCCTCTGGCAAAGGCTTTTGGTCTGAGATGCTTGGCGTGGGTGACTTCTATTACGAGCTGGGTGTGCAGATCATTGAAGTATGCCTGGCACTGAAACACAGAAATGGAGGACTTATTACCCTGGACGAACTGCATCACAGAGTGTTGAAGGGAAGGGGGAAATTTGCTCAGGATGTGAGCCAAGATGACTTGGTGCGGGCCATAAAGAAGCTGAAAGTCATGGGGAACGGCTTTGGGATGATTCCTGTTGGAGGCTCTTACCTCGTGCAGTCAGTGCCAGCAGAGCTCAACATGGACCACACTGTGGTACTTCAGCTGGCTGAGAAGAAGGGCTACGTTTCAGTGAGTGAGATCAGAGAGAGTCTTAAGTGGGAGCGAGAGCGAGCCTGTCATGTGCTGGATCACCTATTGAAAGAGGGCTTGGCGTGGTTGGATTCCCAAGCTTCTGGAGAGCCACAGTATTGGCTGCCAGCCCTCTTTTCTGAGCTGACTTCCCGTGATGTCACACCTGAGGAGGCCAATCAGATAACGCCTTAAGAAAGATAGGATTTTTGGTACGTGGGATGTCTCGGTAACTTCTTGAAGAACAATGTGTGCCTGTTGGGAAAGTCCTGAATTGAAATGGGGTGTATTTAACTTTTAAAGGGTAGGTACCAATTATGTATATAAATCATTGGTAGGTACACATGATGTTGCTTCCCTTCAGCAATTGTGGAGATGAAAACTAGGTTACAAATGTTGTTTTCTGTGGCAGTTGTCAATCAtggatttgttttttgtttttttaaatgtcattatATTCAATTTTCTTCTATTAAAACATTTTAGGATTTCTTGGCA

Function

symbol description
snf8 Predicted to be involved in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to act upstream of or within multivesicular body sorting pathway and protein transport. Predicted to be located in cytoplasm. Predicted to be part of ESCRT II complex. Orthologous to human SNF8 (SNF8 subunit of ESCRT-II).

NR:

description
Vacuolar-sorting protein SNF8

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12188 SNF8, EAP30; ESCRT-II complex subunit VPS22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946381.1 False 1105 mRNA 0.46 7 18595651 18602193
XM_021565018.2 True 1387 mRNA 0.45 8 18595651 18603129

Neighbor

gene id symbol gene type direction distance location
ttll6 LOC106579309 coding downstream 20141 18553176 ~ 18575510 (-)
LOC110492883 hoxb8ba coding downstream 42680 18551195 ~ 18552971 (-)
LOC110491505 hoxb3 coding downstream 44961 18525206 ~ 18550690 (-)
LOC110491508 hoxb6ba coding downstream 49479 18543964 ~ 18546172 (-)
LOC110491507 hoxb5 coding downstream 52179 18541248 ~ 18543472 (-)
LOC118939514 LOC106579307 coding upstream 1856 18604985 ~ 18606174 (-)
chmp2a LOC106579304 coding upstream 19504 18622633 ~ 18626440 (-)
LOC110491515 LOC106579303 coding upstream 69212 18672341 ~ 18679390 (-)
LOC110491517 LOC106579299 coding upstream 154438 18757567 ~ 18765534 (-)
LOC110491520 NA coding upstream 206787 18809916 ~ 18816182 (-)
G1349308 NA non-coding downstream 42 18594183 ~ 18595609 (-)
G1349349 NA non-coding downstream 9869 18585444 ~ 18585782 (-)
G1349347 NA non-coding downstream 11292 18584135 ~ 18584359 (-)
G1349346 NA non-coding downstream 11634 18583786 ~ 18584017 (-)
G1349342 NA non-coding downstream 16132 18579291 ~ 18579519 (-)
G1349353 NA non-coding upstream 17369 18620498 ~ 18621764 (-)
G1349316 NA non-coding upstream 24011 18627140 ~ 18628682 (-)
G1349365 LOC106579302 non-coding upstream 30378 18633507 ~ 18633849 (-)
G1349367 LOC106579302 non-coding upstream 31347 18634476 ~ 18634888 (-)
G1349368 NA non-coding upstream 32140 18635269 ~ 18635891 (-)
prr15lb atd4b other downstream 172465 18417572 ~ 18423242 (-)
LOC110491477 psme3 other downstream 1203697 17389099 ~ 17394265 (-)
G1347343 NA other downstream 1399522 17195330 ~ 17196129 (-)
G1347067 NA other downstream 1666219 16924522 ~ 16929432 (-)
G1345561 NA other downstream 2896388 15698985 ~ 15699263 (-)
G1349366 NA other upstream 30902 18634031 ~ 18634405 (-)
LOC110491541 LOC106579266 other upstream 717741 19310970 ~ 19325094 (-)
G1349896 NA other upstream 857912 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 1088563 19691616 ~ 19697840 (-)
LOC110491567 LOC106579249 other upstream 1727271 20330400 ~ 20334029 (-)

Expression


Co-expression Network