LOC118939514 (LOC106579307)


Basic Information

Item Value
gene id LOC118939514
gene name LOC106579307
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18604985 ~ 18606174 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946382.1
GCCTGCATCTCTCACTGAAGAATATCCATTCACAAGTTTTGTCACCATGAAGGTAGCTTTGTTTTCACTGGTGGTTCTCTGCGTGGCTGGGATGCTGCGTGCTGAAGTCCTGTCCCAGTCTGGCGAGAACAGTCTCACGGAAAATGGACAGGGTTTGGGGAGAAGATACGCAGAGTCAACCATCGCCAGTGACATGAGCAAAATCATGGACTCCATGGTGCAGAAGAATTTTGTCAACTTCCTGCTCaaccagagagagaaaaagagcatGTCTAATGTCACTCCAGAGGAAGATCCAGAGGCTCGCCTGTACAACAATCTCCTGAAAAAGCTTGCACTGTGCATACGCAGCAAGGGACAGATCCATTGATGTTTTGAAGAATATCAACAAATGATCGACATTGGTGGGAGAGTAATGCAAAGAGAAGTCAACAAAAACATTATGACAATTTGGAGGAAAATGTATGCTATCTATTTTTGTGTACACAATATATATTGTAAAGTTAGAAATATGAATCCAGCATGTCTGAACTTTTTCATAAATAATTGCTAAGGGG

Function

NR:

description
PREDICTED: gastric inhibitory polypeptide-like

GO:

id name namespace
GO:0042594 response to starvation biological_process
GO:0031769 glucagon receptor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946382.1 True 557 mRNA 0.43 5 18604985 18606174

Neighbor

gene id symbol gene type direction distance location
snf8 snf8 coding downstream 1856 18595651 ~ 18603129 (-)
ttll6 LOC106579309 coding downstream 29475 18553176 ~ 18575510 (-)
LOC110492883 hoxb8ba coding downstream 52014 18551195 ~ 18552971 (-)
LOC110491505 hoxb3 coding downstream 54295 18525206 ~ 18550690 (-)
chmp2a LOC106579304 coding upstream 16459 18622633 ~ 18626440 (-)
LOC110491515 LOC106579303 coding upstream 66167 18672341 ~ 18679390 (-)
LOC110491517 LOC106579299 coding upstream 151393 18757567 ~ 18765534 (-)
LOC110491520 NA coding upstream 203742 18809916 ~ 18816182 (-)
acsf2 LOC106579292 coding upstream 217445 18823619 ~ 18853128 (-)
G1349308 NA non-coding downstream 9376 18594183 ~ 18595609 (-)
G1349349 NA non-coding downstream 19203 18585444 ~ 18585782 (-)
G1349347 NA non-coding downstream 20626 18584135 ~ 18584359 (-)
G1349346 NA non-coding downstream 20968 18583786 ~ 18584017 (-)
G1349342 NA non-coding downstream 25466 18579291 ~ 18579519 (-)
G1349353 NA non-coding upstream 14324 18620498 ~ 18621764 (-)
G1349316 NA non-coding upstream 20966 18627140 ~ 18628682 (-)
G1349365 LOC106579302 non-coding upstream 27333 18633507 ~ 18633849 (-)
G1349367 LOC106579302 non-coding upstream 28302 18634476 ~ 18634888 (-)
G1349368 NA non-coding upstream 29095 18635269 ~ 18635891 (-)
prr15lb atd4b other downstream 181799 18417572 ~ 18423242 (-)
LOC110491477 psme3 other downstream 1213031 17389099 ~ 17394265 (-)
G1347343 NA other downstream 1408856 17195330 ~ 17196129 (-)
G1347067 NA other downstream 1675553 16924522 ~ 16929432 (-)
G1345561 NA other downstream 2905722 15698985 ~ 15699263 (-)
G1349366 NA other upstream 27857 18634031 ~ 18634405 (-)
LOC110491541 LOC106579266 other upstream 714696 19310970 ~ 19325094 (-)
G1349896 NA other upstream 854867 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 1085518 19691616 ~ 19697840 (-)
LOC110491567 LOC106579249 other upstream 1724226 20330400 ~ 20334029 (-)

Expression


Co-expression Network