chmp2a (LOC106579304)


Basic Information

Item Value
gene id chmp2a
gene name LOC106579304
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18622633 ~ 18626440 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945761.1
GAAAATATCCTCCCAATGGCTAGAAACTCGTTGCAGATGGAGTTCTTGTTTGGGAAGAGGAAGACCCCGGAGGAGATGTTGAGGCAAAACCAGAGGGCACTGACTCGGGCCATGAGAGATCTGGACAGAGAGCGACAAAGACTGGAGCAGCAGGAGAAGAAAATCATAGCTGACATTAAGAAAATGGCCAAACAGGGACAGATGGATGCTGTGAAGATCATGGCGAAGGACTTGGTTCGTACAAGGCACTATGTGAAGAAATTCATTATGATGAAGGCAAATATCCAAGCAGTCAGCCTGAAGATCCAGACTCTAAAGTCAAACAACAGCATGGCACAAGCAATGAAAGGTGTCACCAAAGCAATGGCTACCATGAACAGACAGATGAAGTTGCCACAGATTCAGAAGATCATGATGGAGTTTGAACGACAGAGTGAGATCATGGACATGAAGGAGGAGATGATGAATGATGCCATAGACGATGCCAtgggtgatgaggatgatgaagaAGAGAGTGATGCTGTTGTGTCCCAAGTGTTGGATGAGCTGGGTCTCAATCTCTCTGACGAACTCTCAAATCTGCCATCCACGGGTGGTAGCCTCTCCGTAGCAGGTGGGAAGAAAGCTGAACCCCAGCCAGCCCTGGCAGATGCAGATGCTGACCTTGAGGAGAGACTGAATAACCTCAGGAGAGACTGAGTGTGGAAAAACTGGCACGCAACAGCACTTTGGCAGCCTGGCGTTTAATACAGATACACATGTACTCAGCAACTCAAATCTCTGTACATAGATTTATTTGGGTAACACTGGAGGGTTTCAGTGAGAAATCTGTTATGGTATATAAGCTTTTTTGTTGCAGGTATTATTTTTTTGCTTGCAGTATGTTATCTTTAATCAATGACGGATCAGAATCATTATCCATACAATTGTTCTCTTAAAAATATGAAGCATTCTCTTTAGGGGGTATATTTTAATGGCGTTTAAATACACCAGAGGCATGCATTACACTCCTTGGGTAAATTGAACACTATATTCACTTTAAAATCATTAGACTATCCTATTAAAGTAAACATTTTGTATATTTGATGTACAAGTATCATTACATTTGTACATAATGTCAACTTTTAGTGGTGTGCAGGCATACAGTATACATTGCCAGATAACATTAACATGATTTAGTAAGGGTTTTACTGTTTGTTACTTGCTTGCTTTTTATTTACTTGGTGACTTTGAATAACATAAGGATTCAGAGGTTTCAACAGTACCATTATCGTAACGTCCTTTGTGAGTTAAATGGTTTCAACAAAAATACTTAAGTGGGGTAAAATATGTCTACTGTTTGGCAAATGTTTCTCCATGTCAAATGTCCAAAAAGAGGGCACTCACTTGATGGTGCCTGGTAAAACTGAAATAGCCTTTTTTATCCTAGGACTGTTGTCATTGAGTTGTCATGATAATCAATGTAATATTTATCGAAAGGGTGATGGAAGGTGTGGTGGTTTGTATAAGAAATTCATATTTTGCCTTTattcaataaacatttttttttacatttga
>NM_001165070.2
ATGCGGAAGTatgtgaaagaaaacaaataggTAGACTATTCCCGAATTAAAACCTTTGAAGACCTCTCAAACAGTATTTTCATTATCGTGACATAAACAGCCACACGAAAGACCTCATACACGATGGAGTTCTTGTTTGGGAAGAGGAAGACCCCGGAGGAGATGTTGAGGCAAAACCAGAGGGCACTGACTCGGGCCATGAGAGATCTGGACAGAGAGCGACAAAGACTGGAGCAGCAGGAGAAGAAAATCATAGCTGACATTAAGAAAATGGCCAAACAGGGACAGATGGATGCTGTGAAGATCATGGCGAAGGACTTGGTTCGTACAAGGCACTATGTGAAGAAATTCATTATGATGAAGGCAAATATCCAAGCAGTCAGCCTGAAGATCCAGACTCTAAAGTCAAACAACAGCATGGCACAAGCAATGAAAGGTGTCACCAAAGCAATGGCTACCATGAACAGACAGATGAAGTTGCCACAGATTCAGAAGATCATGATGGAGTTTGAACGACAGAGTGAGATCATGGACATGAAGGAGGAGATGATGAATGATGCCATAGACGATGCCAtgggtgatgaggatgatgaagaAGAGAGTGATGCTGTTGTGTCCCAAGTGTTGGATGAGCTGGGTCTCAATCTCTCTGACGAACTCTCAAATCTGCCATCCACGGGTGGTAGCCTCTCCGTAGCAGGTGGGAAGAAAGCTGAACCCCAGCCAGCCCTGGCAGATGCAGATGCTGACCTTGAGGAGAGACTGAATAACCTCAGGAGAGACTGAGTGTGGAAAAACTGGCACGCAACAGCACTTTGGCAGCCTGGCGTTTAATACAGATACACATGTACTCAGCAACTCAAATCTCTGTACATAGATTTATTTGGGTAACACTGGAGGGTTTCAGTGAGAAATCTGTTATGGTATATAAGCTTTTTTGTTGCAGGTATTATTTTTTTGCTTGCAGTATGTTATCTTTAATCAATGACGGATCAGAATCATTATCCATACAATTGTTCTCTTAAAAATATGAAGCATTCTCTTTAGGGGGTATATTTTAATGGCGTTTAAATACACCAGAGGCATGCATTACACTCCTTGGGTAAATTGAACACTATATTCACTTTAAAATCATTAGACTATCCTATTAAAGTAAACATTTTGTATATTTGATGTACAAGTATCATTACATTTGTACATAATGTCAACTTTTAGTGGTGTGCAGGCATACAGTATACATTGCCAGATAACATTAACATGATTTAGTAAGGGTTTTACTGTTTGTTACTTGCTTGCTTTTTATTTACTTGGTGACTTTGAATAACATAAGGATTCAGAGGTTTCAACAGTACCATTATCGTAACGTCCTTTGTGAGTTAAATGGTTTCAACAAAAATACTTAAGTGGGGTAAAATATGTCTACTGTTTGGCAAATGTTTCTCCATGTCAAATGTCCAAAAAGAGGGCACTCACTTGATGGTGCCTGGTAAAACTGAAATAGCCTTTTTTATCCTAGGACTGTTGTCATTGAGTTGTCATGATAATCAATGTAATATTTATCGAAAGGGTGATGGAAGGTGTGGTGGTTTGTATAAGAAATTCATATTTTGCCTTTattcaataaacatttttttttacatttg
>XM_036945762.1
tgggaactcggggggAAAAAACTAGATGGAGTTCTTGTTTGGGAAGAGGAAGACCCCGGAGGAGATGTTGAGGCAAAACCAGAGGGCACTGACTCGGGCCATGAGAGATCTGGACAGAGAGCGACAAAGACTGGAGCAGCAGGAGAAGAAAATCATAGCTGACATTAAGAAAATGGCCAAACAGGGACAGATGGATGCTGTGAAGATCATGGCGAAGGACTTGGTTCGTACAAGGCACTATGTGAAGAAATTCATTATGATGAAGGCAAATATCCAAGCAGTCAGCCTGAAGATCCAGACTCTAAAGTCAAACAACAGCATGGCACAAGCAATGAAAGGTGTCACCAAAGCAATGGCTACCATGAACAGACAGATGAAGTTGCCACAGATTCAGAAGATCATGATGGAGTTTGAACGACAGAGTGAGATCATGGACATGAAGGAGGAGATGATGAATGATGCCATAGACGATGCCAtgggtgatgaggatgatgaagaAGAGAGTGATGCTGTTGTGTCCCAAGTGTTGGATGAGCTGGGTCTCAATCTCTCTGACGAACTCTCAAATCTGCCATCCACGGGTGGTAGCCTCTCCGTAGCAGGTGGGAAGAAAGCTGAACCCCAGCCAGCCCTGGCAGATGCAGATGCTGACCTTGAGGAGAGACTGAATAACCTCAGGAGAGACTGAGTGTGGAAAAACTGGCACGCAACAGCACTTTGGCAGCCTGGCGTTTAATACAGATACACATGTACTCAGCAACTCAAATCTCTGTACATAGATTTATTTGGGTAACACTGGAGGGTTTCAGTGAGAAATCTGTTATGGTATATAAGCTTTTTTGTTGCAGGTATTATTTTTTTGCTTGCAGTATGTTATCTTTAATCAATGACGGATCAGAATCATTATCCATACAATTGTTCTCTTAAAAATATGAAGCATTCTCTTTAG

Function

NR:

description
PREDICTED: charged multivesicular body protein 2a-like

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0031902 late endosome membrane cellular_component

KEGG:

id description
K12191 CHMP2A; charged multivesicular body protein 2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945761.1 False 1557 mRNA 0.40 6 18622633 18625717
NM_001165070.2 False 1643 mRNA 0.40 6 18622634 18626440
XM_036945762.1 True 949 mRNA 0.45 6 18623230 18625643

Neighbor

gene id symbol gene type direction distance location
LOC118939514 LOC106579307 coding downstream 16459 18604985 ~ 18606174 (-)
snf8 snf8 coding downstream 19504 18595651 ~ 18603129 (-)
ttll6 LOC106579309 coding downstream 47123 18553176 ~ 18575510 (-)
LOC110492883 hoxb8ba coding downstream 69662 18551195 ~ 18552971 (-)
LOC110491508 hoxb6ba coding downstream 76461 18543964 ~ 18546172 (-)
LOC110491515 LOC106579303 coding upstream 45901 18672341 ~ 18679390 (-)
LOC110491517 LOC106579299 coding upstream 131127 18757567 ~ 18765534 (-)
LOC110491520 NA coding upstream 183476 18809916 ~ 18816182 (-)
acsf2 LOC106579292 coding upstream 197179 18823619 ~ 18853128 (-)
tap2t tap2a coding upstream 236582 18863022 ~ 18875578 (-)
G1349353 NA non-coding downstream 869 18620498 ~ 18621764 (-)
G1349308 NA non-coding downstream 27024 18594183 ~ 18595609 (-)
G1349349 NA non-coding downstream 36851 18585444 ~ 18585782 (-)
G1349347 NA non-coding downstream 38274 18584135 ~ 18584359 (-)
G1349346 NA non-coding downstream 38616 18583786 ~ 18584017 (-)
G1349316 NA non-coding upstream 700 18627140 ~ 18628682 (-)
G1349365 LOC106579302 non-coding upstream 7067 18633507 ~ 18633849 (-)
G1349367 LOC106579302 non-coding upstream 8036 18634476 ~ 18634888 (-)
G1349368 NA non-coding upstream 8829 18635269 ~ 18635891 (-)
G1349378 NA non-coding upstream 28434 18654874 ~ 18655508 (-)
prr15lb atd4b other downstream 199447 18417572 ~ 18423242 (-)
LOC110491477 psme3 other downstream 1230679 17389099 ~ 17394265 (-)
G1347343 NA other downstream 1426504 17195330 ~ 17196129 (-)
G1347067 NA other downstream 1693201 16924522 ~ 16929432 (-)
G1345561 NA other downstream 2923370 15698985 ~ 15699263 (-)
G1349366 NA other upstream 7591 18634031 ~ 18634405 (-)
LOC110491541 LOC106579266 other upstream 694430 19310970 ~ 19325094 (-)
G1349896 NA other upstream 834601 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 1065252 19691616 ~ 19697840 (-)
LOC110491567 LOC106579249 other upstream 1703960 20330400 ~ 20334029 (-)

Expression


Co-expression Network