LOC110491515 (LOC106579303)


Basic Information

Item Value
gene id LOC110491515
gene name LOC106579303
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18672341 ~ 18679390 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565026.2
CGGTAGGTGGCGTAGCTCAATGTGTTCTAATGTgggctgtctttctctctaacaTCCTAAAGGGAAGACTAGTTTAGCCGTGTAGATTACTTGTTGAATGACACAAGCACCAAAGTTATTTTTGTGTATGTTTTATTGCTCATTTGTTCCAATTTTTCTTCACCTTGATATAGGATATCGTAGTAATACATTGCATTTGGACTGAGAAGAAATGCGGGACCGAACCAAGGAACTGGGCAATACTGCCGAGGTGTCAGACGAGGATGAAGAGGGCAGGGCACTTATGATCAAACCAGGGACTTCTACagtgagggaggagaaggagaatgaTGCATTTTTCAAGAAGGTCCAAGAGATTCGAGAGGGACTGGAGACGCTTAAAAAGGTGGTTTCTGACCTTGAGAACAAACAGAAGACCGTGTTGGGTGTGGCACTGCCAGAGGACGgcatgaaaaggGAACTCCAAACCCTTCGGGAACAGATCAAAACAATGGCAATGCAGATCCATAAGAAACTGAAGATCATTGAACCCAAGAAAGGAGAAGATGATGGGAAATACATCCCCATAAACCTAAGGATGCAGAGAGCCCAACATGGCGTCTTGTCTCGGGAGTTTGTGGAGTTGATGGGCCACTGTAACACCATCCAGGCTTCCTACAGAGATCGCAACGTGGAGAGGATACAGAGGCAGCTCAGAATCACTGGCACCAATGTAACAGATGAAGAGTTGGATGTTATGCTTGAAAGTGGACAGACTGATGTTTTCACACAGAATATCCTGATCGACGCTAAAGCCACTAAGCAGGCGCTGAATGAAATTGAGTCCCGGCATGACGAGATCCTCAAACTGGAAAGGAGCATCAGGGATCTGCATGACATGTTCCAGTACCTGGCCATGGAGGTGGAGGCTCAGGGGGAGATGGTCAACCGCATTGAAGCCAACGTCCTCAACTCAACTGATTATGTGCAGAAGGCAGTGGTGGAGACCGAGAAAGCTGCCACCTACCAAAACAAAGCACGCAAGAAGAAGATATGGATCGCGTTATGCTGTGCCATTCTCCTCCTCATTTTAGCCATCTCATTGGCGATCACCTTCTCCTGAGATCCAGACACTGTCTTCCCTTGACCCACTCTCCTGCCCTGGGACCTTGGAAAAAAAGACATGTCCTGTCTTACTGATATCACTGAACTTTTGACTAACACCACTCGCATATAGACAGACACAAACAATCATAGTCTCTCATGTTAACAGCCCCACTCTCAGCGAAAGGCCATGCTGAAGGCTTTTTGGCCCCCCTCTGTGGTGCCCTTTTCCATTTAGGATGCCATTGAAGAAATGTGTGGACAACTCATTACTCAACGTGCTGGACCCCTATGTATCCACAAGCACGGAAGAATGCAGTATTGGAACTGGCACTGATCTGATTTACTCAGGAAAAACCATAGCTAAGGTGGTTATTTTACGAAGTGAAAAACTTTTTAGGGCTTGTTTTTAAATGCAGATATAGAATATAATTGTATATCGCCCATTTTCTTATTTGTTGAGTAATTAAGACATTAAGGCAGTTTTATAAACCTTTCGAGATGTCTGAACTGGCTTCCATGTTGCCCCTGAAATTGATCTCTCATTAAGACTATATTGTCTGATCACTACAATGAATGGCCCACTCCCATGTTGTCCTATTTACATCAGTATTTATTTATAGTTTGAATATTGTTGTGGAAGCTGCTATTTTAATAGTCTTGCCACAGCAACAATCAATGGGAATCCTTATGGTTATGGTGCCTTTTTCCGTATGTGCTGACGGACAGCGCCAAGGGCTAAGAACAATGTAGTGTACTACCTTATTTTGTAAAGAAGGGATGGAAACTGCTGTAATTATTCAATGCTTCCGCTTCAACGCATTACCCATTTTTTTTACATCTGTATTTTTTCCAAACAGTTAAGATCTTAGCCTTATTGAACTGTGCTGACATCACAAAAATGGGTCAGAAGTCTGTGTGTAGTGAATCTGGATGGCCAGagagctagcaacaatgacaagctgCCATGTGAGGAATCGTAGGTGCTTGTTCAAGTGTTGTTTTGTCCATGCTGACCAACTTAGTTCCTAAGGAAATCAGTGAATTTAAATGAATGCATTTcacataccataaccccagcacaaggtgcacctgtgtaacgatcataTGTCAACttttaggtggatggattatcttggcaaagaatactaacagggatgtaaacaaatgtgtgtacAACATTTCAGAGAactaagctttttgtgcatatggaacatttgctGGGGTCTttattttcagctcatgaaatatgggaccaacacgttGCATGGCTGTTTAATTTTGTATAGAACTTTCAGCTCATTTTAATGCATTGTTCAAATAAAGTTGCCTTCTGTGCTTGTATGGGTTTAACTGTTGCCCAGATTCAAGTTTGTGAAA
>XM_021565025.2
ctctctaacaTCCTAAAGGGAAGACTAGTTTAGCCGTGTAGATTACTTGTTGAATGACACAAGCACCAAAGTTATTTTTGTGTATGTTTTATTGCTCATTTGTTCCAATTTTTCTTCACCTTGATATAGGATATCGTAGTAATACATTGCATTTGGACTGAGAAGAAATGCGGGACCGAACCAAGGAACTGGGCAATACTGCCGAGGTGTCAGACGAGGATGAAGAGGGCAGGGCACTTATGATCAAACCAGGGACTTCTACagtgagggaggagaaggagaatgaTGCATTTTTCAAGAAGGTCCAAGAGATTCGAGAGGGACTGGAGACGCTTAAAAAGGTGGTTTCTGACCTTGAGAACAAACAGAAGACCGTGTTGGGTGTGGCACTGCCAGAGGACGgcatgaaaaggGAACTCCAAACCCTTCGGGAACAGATCAAAACAATGGCAATGCAGATCCATAAGAAACTGAAGATCATTGAACCCAAGAAAGGAGAAGATGATGGGAAATACATCCCCATAAACCTAAGGATGCAGAGAGCCCAACATGGCGTCTTGTCTCGGGAGTTTGTGGAGTTGATGGGCCACTGTAACACCATCCAGGCTTCCTACAGAGATCGCAACGTGGAGAGGATACAGAGGCAGCTCAGAATCACTGGCACCAATGTAACAGATGAAGAGTTGGATGTTATGCTTGAAAGTGGACAGACTGATGTTTTCACACAGAATATCCTGATCGACGCTAAAGCCACTAAGCAGGCGCTGAATGAAATTGAGTCCCGGCATGACGAGATCCTCAAACTGGAAAGGAGCATCAGGGATCTGCATGACATGTTCCAGTACCTGGCCATGGAGGTGGAGGCTCAGGGGGAGATGGTCAACCGCATTGAAGCCAACGTCCTCAACTCAACTGATTATGTGCAGAAGGCAGTGGTGGAGACCGAGAAAGCTGCCACCTACCAAAACAAAGCACGCAAGAAGAAGATATGGATCGCGTTATGCTGTGCCATTCTCCTCCTCATTTTAGCCATCTCATTGGCGATCACCTTCTCCTGAGATCCAGACACGTGAGTTCACTCTTGACGTGCACACGAGTGTCTTCCCTTGACCCACTCTCCTGCCCTGGGACCTTGGAAAAAAAGACATGTCCTGTCTTACTGATATCACTGAACTTTTGACTAACACCACTCGCATATAGACAGACACAAACAATCATAGTCTCTCATGTTAACAGCCCCACTCTCAGCGAAAGGCCATGCTGAAGGCTTTTTGGCCCCCCTCTGTGGTGCCCTTTTCCATTTAGGATGCCATTGAAGAAATGTGTGGACAACTCATTACTCAACGTGCTGGACCCCTATGTATCCACAAGCACGGAAGAATGCAGTATTGGAACTGGCACTGATCTGATTTACTCAGGAAAAACCATAGCTAAGGTGGTTATTTTACGAAGTGAAAAACTTTTTAGGGCTTGTTTTTAAATGCAGATATAGAATATAATTGTATATCGCCCATTTTCTTATTTGTTGAGTAATTAAGACATTAAGGCAGTTTTATAAACCTTTCGAGATGTCTGAACTGGCTTCCATGTTGCCCCTGAAATTGATCTCTCATTAAGACTATATTGTCTGATCACTACAATGAATGGCCCACTCCCATGTTGTCCTATTTACATCAGTATTTATTTATAGTTTGAATATTGTTGTGGAAGCTGCTATTTTAATAGTCTTGCCACAGCAACAATCAATGGGAATCCTTATGGTTATGGTGCCTTTTTCCGTATGTGCTGACGGACAGCGCCAAGGGCTAAGAACAATGTAGTGTACTACCTTATTTTGTAAAGAAGGGATGGAAACTGCTGTAATTATTCAATGCTTCCGCTTCAACGCATTACCCATTTTTTTTACATCTGTATTTTTTCCAAACAGTTAAGATCTTAGCCTTATTGAACTGTGCTGACATCACAAAAATGGGTCAGAAGTCTGTGTGTAGTGAATCTGGATGGCCAGagagctagcaacaatgacaagctgCCATGTGAGGAATCGTAGGTGCTTGTTCAAGTGTTGTTTTGTCCATGCTGACCAACTTAGTTCCTAAGGAAATCAGTGAATTTAAATGAATGCATTTcacataccataaccccagcacaaggtgcacctgtgtaacgatcataTGTCAACttttaggtggatggattatcttggcaaagaatactaacagggatgtaaacaaatgtgtgtacAACATTTCAGAGAactaagctttttgtgcatatggaacatttgctGGGGTCTttattttcagctcatgaaatatgggaccaacacgttGCATGGCTGTTTAATTTTGTATAGAACTTTCAGCTCATTTTAATGCATTGTTCAAATAAAGTTGCCTTCTGTGCTTGTATGGGTTTAACTGTTGCCCAGATTCAAGTTTG

Function

NR:

description
syntaxin-4-like

GO: NA

KEGG:

id description
K13502 STX4; syntaxin 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565026.2 False 2463 mRNA 0.43 11 18672341 18679390
XM_021565025.2 True 2442 mRNA 0.43 11 18672346 18679346

Neighbor

gene id symbol gene type direction distance location
chmp2a LOC106579304 coding downstream 45901 18622633 ~ 18626440 (-)
LOC118939514 LOC106579307 coding downstream 66167 18604985 ~ 18606174 (-)
snf8 snf8 coding downstream 69212 18595651 ~ 18603129 (-)
ttll6 LOC106579309 coding downstream 96831 18553176 ~ 18575510 (-)
LOC110492883 hoxb8ba coding downstream 119370 18551195 ~ 18552971 (-)
LOC110491517 LOC106579299 coding upstream 78177 18757567 ~ 18765534 (-)
LOC110491520 NA coding upstream 130526 18809916 ~ 18816182 (-)
acsf2 LOC106579292 coding upstream 144229 18823619 ~ 18853128 (-)
tap2t tap2a coding upstream 183632 18863022 ~ 18875578 (-)
slc16a5a LOC106579290 coding upstream 201012 18880402 ~ 18888619 (-)
G1349378 NA non-coding downstream 16833 18654874 ~ 18655508 (-)
G1349368 NA non-coding downstream 36450 18635269 ~ 18635891 (-)
G1349367 LOC106579302 non-coding downstream 37453 18634476 ~ 18634888 (-)
G1349365 LOC106579302 non-coding downstream 38492 18633507 ~ 18633849 (-)
G1349316 NA non-coding downstream 43659 18627140 ~ 18628682 (-)
G1349431 NA non-coding upstream 65839 18745229 ~ 18782372 (-)
G1349460 NA non-coding upstream 118471 18797861 ~ 18799342 (-)
G1349462 NA non-coding upstream 122957 18802347 ~ 18802617 (-)
G1349466 NA non-coding upstream 130121 18809511 ~ 18809746 (-)
G1349366 NA other downstream 37936 18634031 ~ 18634405 (-)
prr15lb atd4b other downstream 249155 18417572 ~ 18423242 (-)
LOC110491477 psme3 other downstream 1280387 17389099 ~ 17394265 (-)
G1347343 NA other downstream 1476212 17195330 ~ 17196129 (-)
G1347067 NA other downstream 1742909 16924522 ~ 16929432 (-)
LOC110491541 LOC106579266 other upstream 641480 19310970 ~ 19325094 (-)
G1349896 NA other upstream 781651 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 1012302 19691616 ~ 19697840 (-)
LOC110491567 LOC106579249 other upstream 1651010 20330400 ~ 20334029 (-)
LOC110491585 NA other upstream 1960836 20640226 ~ 20650176 (-)

Expression


Co-expression Network