LOC110491520


Basic Information

Item Value
gene id LOC110491520
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18809916 ~ 18816182 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468844.2
ATTTGTGAATGCGTGACAACTGTGTACACTTGTATAGTTTATCATTTAAATAGTTTATTTAAATTCtcacaaaatacatttgatttaaccaACGTGTTTCGTAATGAAGGGAGGGGTGATCCGGCGGAAGTCGTTGTACGTGCATCTTTTGCGTTCTTGGGGAGGTCACGGTACAGTTGTTGCAAGATACTAGTGAAATAAGAATATTTTGACGGACAACAATTACTAATTTTGCAAAATTAGTCTAGTGGTGGTTGTTGTCTACCATGAAGCAACATCAACTGTCTGCCATAAAGCGCCTTACAAAACCAATTTTATTTGGAACATTAATCGTGGGACTTGCCACTGCTTTCTTCAACAGACACCGATTCTTTGAGGACCTAGCAGAGATGAGGGCCCAGGAGCGTGCTAAGAATGATGCCAAGCTAATGGAGGTGCTGGAGATGAGGAAGAGGCAGATGGAGGAGTTAGCAGAGAAGAAGAAGCCATGATGAACCTCGACCCACTGGGCACAACAGACACTGAGCTGGACAGACCGAATGACAGTATCCCTTTGGTGGGGTTGCTGGGGGTTGTACAATACATGCAATTTTCAGTAAGGGAATCATTTAGCAAACAAATAGACAGGACAGAGAATAAGTAATGTTATGACAAGAGCATCATTCATGTTCAGGTTTTCATTGTGGTTAATCATTCATCTAACTTAATATTTTCGTGGAGCTCTAAATTGTCCAATGAGATGTCCATGAAGAGGTCCTCTTCTTGTCAAAGAAAGAACTGAAAGGCAATAAGGTGTTTGGGGAGTGGGTACACTTTTTGGTTTGCTGCTGCAACTTCACTACAATGTAATATTTGTTTAAAGAGCGGAGCATCACATTTTTGTCCCATGATGATAATCGGGTACAGCTGTGAAGAAGCCTACAGTAGTCATCATTAATTGTACAGCAaatcatgatgtttaatcagaaTAGATTATCCACTTGTTAGTGGGTACCACGGAGAGGGAATTCAACATCCGAAATGTATGATTGCTGGatttaaataaaacaaaacatgaGGGCAA
>TU1542713
CTTGGGGAGGTCACGGTACAGTTGTTGCAAGATACTAGTGAAATAAGAATATTTTGACGGACAACAATTACTAATTTTGCAAAATTAGTCTAGTGGTGGTTGTTGTCTACCATGAAGCAACATCAACTGTCTGCCATAAAGCGCCTTACAAAACCAATTTTATTTGGAACATTAATCGTGGGACTTGCCACTGCTTTCTTCAACAGACACCGATTCTTTGAGGACCTAGCAGAGATGAGGGCCCAGGAGCGTGCTAAGAATGATGCCAAGCTAATGGAGGTGCTGGAGATGAGGAAGAGGCAGATGGAGGAGTTAGCAGAGAAGAAGAAGCCATGATGAACCTCGACCCACTGGGCACAACAGACACTGAGCTGGACAGACCGAATGACAGTATCCCTTTGGTGGGGTTGCTGGGGGTTGTACAATACATGCAATTTTCAGTAAGGGAATCATTTAGCAAACAAATAGACAGGACAGAGAATAAGTAATGTTATGACAAGAGCATCATTCATGTTCAGGTTTTCATTGTGGTTAATCATTCATCTAACTTAATATTTTCGTGGAGCTCTAAATTGTCCAATGAGATGTCCATGAAGAGGTCCTCTTCTTGTCAAAGAAAGAACTGAAAGGCAATAAGGTGTTTGGGGAGTGGGTACACTTTTTGGTTTGCTGCTGCAACTTCACTACAATGTAATATTTGTTTAAAGAGCGGAGCATCACATTTTTGTCCCATGATGATAATCGGGTACAGCTGTGAAGAAGCCTACAGTAGTCATCATTAATTGTACAGCAaatcatgatgtttaatcagaaTAGATTATCCACTTGTTAGTGGGTACCACGGAGAGGGAATTCAACATCCGAAATGTATGATTGCTGGatttaaataaaacaaaacatgaGGG

Function

NR:

description
hypothetical protein cypCar_00011824

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468844.2 False 1063 mRNA 0.40 2 18809916 18816182
TU1542713 True 905 lncRNA 0.41 2 18809919 18816027

Neighbor

gene id symbol gene type direction distance location
LOC110491517 LOC106579299 coding downstream 44382 18757567 ~ 18765534 (-)
LOC110491515 LOC106579303 coding downstream 130526 18672341 ~ 18679390 (-)
chmp2a LOC106579304 coding downstream 183476 18622633 ~ 18626440 (-)
LOC118939514 LOC106579307 coding downstream 203742 18604985 ~ 18606174 (-)
snf8 snf8 coding downstream 206787 18595651 ~ 18603129 (-)
acsf2 LOC106579292 coding upstream 7437 18823619 ~ 18853128 (-)
tap2t tap2a coding upstream 46840 18863022 ~ 18875578 (-)
slc16a5a LOC106579290 coding upstream 64220 18880402 ~ 18888619 (-)
kctd2 LOC106589267 coding upstream 82561 18898375 ~ 18909532 (-)
LOC110491527 LOC106579286 coding upstream 121673 18937855 ~ 18950644 (-)
G1349466 NA non-coding downstream 170 18809511 ~ 18809746 (-)
G1349462 NA non-coding downstream 7299 18802347 ~ 18802617 (-)
G1349460 NA non-coding downstream 10574 18797861 ~ 18799342 (-)
G1349431 NA non-coding downstream 27544 18745229 ~ 18782372 (-)
G1349378 NA non-coding downstream 154408 18654874 ~ 18655508 (-)
G1349473 armc7 non-coding upstream 856 18817038 ~ 18821214 (-)
G1349479 NA non-coding upstream 99460 18915642 ~ 18916129 (-)
G1349530 NA non-coding upstream 136665 18952847 ~ 18954943 (-)
G1349563 NA non-coding upstream 206981 19023163 ~ 19023558 (-)
G1349366 NA other downstream 175511 18634031 ~ 18634405 (-)
prr15lb atd4b other downstream 386730 18417572 ~ 18423242 (-)
LOC110491477 psme3 other downstream 1417962 17389099 ~ 17394265 (-)
G1347343 NA other downstream 1613787 17195330 ~ 17196129 (-)
G1347067 NA other downstream 1880484 16924522 ~ 16929432 (-)
LOC110491541 LOC106579266 other upstream 504688 19310970 ~ 19325094 (-)
G1349896 NA other upstream 644859 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 875510 19691616 ~ 19697840 (-)
LOC110491567 LOC106579249 other upstream 1514218 20330400 ~ 20334029 (-)
LOC110491585 NA other upstream 1824044 20640226 ~ 20650176 (-)

Expression


Co-expression Network