acsf2 (LOC106579292)


Basic Information

Item Value
gene id acsf2
gene name LOC106579292
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18823619 ~ 18853128 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565037.2
CGCGCAACCTGGGAACAAAGTTCATCTGCTGTAATTTATGTAACAAAATCTGTCATCTCAACATACGGGTTTATTATACTGTTATTTTAAGGCGATATTATCTATGGCTGGAAGGCATTCCAAACCGACCAATCAGTGTCAAACAACAAGCATTTTCTACCTCTTTTAGGGTAGATTGGTGCAATGGGACTTGTTATACAACTACTGAAGGAATTTTCTTAACTCGATGGCGCATCACCAGGGTCAGCTTTAACTGCAGTCTATCGTTTGGTTTTTAATATTGTATAAACAGATTTTTTAAAGGATTTCTTAGATAATGTTTTCGAGGATTGCATTTGGCTCTCAGCCTCTTCGGTCGAATGTATTTTTTTCCAAGCCAGTAAAACTTTTGCAAAAACCAAGGACAACTTTTCCTTCACAAGGCAGTTGTGCAGTCCATGTGGACAGTCCACCCACTATCCCCACACTTACCACCAGCTATGCTCATGGCACCTCCTCCAAGTCTCTACTCTTCAGTACGGTCGGTGGGAGCCTCCAGGCTTCAGCTGAACGCTTTCCAGACCGGGAGGCTGTAGTGTTCCTACAGGACGGGGTCAGGAAGACCTTCTCACAGCTCCAGCAGGATGTGGACCAGGCTGCTGCAGGCCTCCTGGCACTGGGACTGAAGAGGGGGGACCGACTGGGCATGTGGGGACCCAACACATATGAGTGGGTCCTGTTCCAGTTTGCCTCAGCCAAGGCTGGCATCATACTGGTGTCTGTGAATCCAGCCTATCAGGTGCAGGAGTTGGAGTTTGCTTTGAGGAAGGTTGGATGCAATGCCATTGTGTGCCCGACCCAGTTTAAGACCCAGAAGTACTGTGACATGCTCAGGCAGATCTGTCCAGAGATGGACACTGCTATCCCAGGATCGGTCAAGAGTGCCAGACTCCCTGACCTCCACACAGTGATCGTGACAGACAGCCGGCAGCCGGGGATGTACCACCTAGAGGACGTGATGCAGGCAGGGAGCAGCCAGCATATGCAGCAGCTGGAGGAGCTGCAGAAGAAACTGTCCTTCGACGACCCCATCAATATTCAGTTCACATCGGGTACGACGGGGAACCCTAAAGGTGCCACCCTCTCCCACCACAACATCGTCAACAATGCCTACTTCATTGGCATGCGACTTGGATATGACTGGAGGTCTCAGGTACGCGTGTGCCTGCCTGTGCCCATGTACCACTGCTTCGGCTCGGTgggtggtggcattgtcatggcCACGCATGGCATCACGTTGGTCTCTCCCTCCACTGGGTACGACGGACGCGCCAACCTGGCAGCTATGGAGAGTGAAAGGTGTACCTTTGTCTATGGCACTCCTACTATGTACATCGACATGCTGGGCCAGCCTGACTTGGCCAAGTTTGACTTGTCGTCtgtggagggagGCATCATGGCTGGTTCCCCGTGTCCACCTGAAATAGTGAAGAAGGTCATTTCTACCATGGGCATTAAGGAGTTCGTAATTGCCTATGGAACCACAGAGACCAGCCCTGTGTCATTCTGTGGCTTCCCAACAGACAATTTGGAGAGGAAGTCAGAGACTGTTGGGTGCATTGCCAGTCACATAGAGGCTAAGGTAGTTGACCCTGGCTCTGGTCAGCTCGTGCCTCTCGGGATATCAGGAGAGCTGATGATCAGGGGCTACTGTGTAATGCTGGAGTACTGGGGGGATGTCGCCAAGACAGACGAGTGCATTGCCAAAGACCGCTGGTATAAGACTGGTGACATCGCCAGCCTGGACAAGTATGGCTTCTGCCGCATCGAGGGTCGAATCAAGGACATGATCATCCGAGGAGGGGAGAACATATACCCAGCTGAGATTGAGCAGTTCCTACACACCCACCCTAAAGTCCAGGAGGCACAGGTGATTGGAATAAAGGATGAGCGTATGGGAGAGGAGGTGTGTGCCTGCCTCAAGCTGAAGGCGGGACAGGATTGCAGTGCAGAGGACATTAAAGCTTACTGCAAGGGAAAGATTGCTCATTTCAAGATCCCACGCTATGTAACATTTGTGAATGACTATCCGCTCACAGTTTCAGGAAAGATCCAGAAGAACAAACTGCGTGAGCAGACAGAGAAGTTTCTGGCACTGTGAAGGTCTGAAGTAAGGAGAGAAAGTCGGGCTAGACATGGTGGCTCATATCCCCGGCACATGGCATATGTTTTCGCTCCACTCTGCCAAAGCACCTGCTGAAATCAGTCATTATGGCTGAATTtttacaggcagcccaattcttatCTTTTATCcactaacattttttttttaaagagctaatgtgaaaagatctgatgtgattggtcaaaagaccaataatTGGAAAAGATATCTAAATTGGGCAGACTAAGGGCTGAAGATCCACTTTACAGAGCGATTGAcaattaaaggcaatgttcccgcagTCACGGAggctgcattcacggtaaacacaGAAATGACCTTTCAATTTTAAACGTGGATCTTCCGCAATATGGATTGAATGCAGCCTTAAGTGCCATCATTTGTGCCTTGTTTAGTGCAAACCTTTTTGCAGAACCCATTGGACTAATGCTATGTTTTAGCAGGCACAGTTTAACAGGAAAGCGAAGCCATGTACAGCAGTCAGCTAAACATTGACAGCCAAATGATTTTACTGTATTGACAGCCTTGAAACCACCTCAATCTGTGACTCGGAgctctattcagtctgtaaaattgaagcgttacagattccgCAATTTTATAAAATGTAAAAGGtcatttccaattgagccgacGTCTGCAGGGTTTAACGCTgaagcgggaacattgcctttacatttcagtGAAGCTGTACTTCGGCGACGCAGACCGAATAGCGTCCTTATATTACAGCTGCCTATAtgtcaaaataaaaaacatgtacCTTACCATTAAAA
>XM_021565038.2
TTCATTCATGCAGTCGAAATGATTATCCGTCGTAGTTGTTTAAATTCGGATAGTGATTGGATCACGGATCAAACGTGTTAACTGAAAAAACATTTGTATGGGTGTTTTCAAGCCCAAAATGCTTGCTTGCTACaccaaagaaaacaaagaatagaAACTGGTTACACCATGTACATTTGTGTCACCTGCAGTGCAGTCCATGTGGACAGTCCACCCACTATCCCCACACTTACCACCAGCTATGCTCATGGCACCTCCTCCAAGTCTCTACTCTTCAGTACGGTCGGTGGGAGCCTCCAGGCTTCAGCTGAACGCTTTCCAGACCGGGAGGCTGTAGTGTTCCTACAGGACGGGGTCAGGAAGACCTTCTCACAGCTCCAGCAGGATGTGGACCAGGCTGCTGCAGGCCTCCTGGCACTGGGACTGAAGAGGGGGGACCGACTGGGCATGTGGGGACCCAACACATATGAGTGGGTCCTGTTCCAGTTTGCCTCAGCCAAGGCTGGCATCATACTGGTGTCTGTGAATCCAGCCTATCAGGTGCAGGAGTTGGAGTTTGCTTTGAGGAAGGTTGGATGCAATGCCATTGTGTGCCCGACCCAGTTTAAGACCCAGAAGTACTGTGACATGCTCAGGCAGATCTGTCCAGAGATGGACACTGCTATCCCAGGATCGGTCAAGAGTGCCAGACTCCCTGACCTCCACACAGTGATCGTGACAGACAGCCGGCAGCCGGGGATGTACCACCTAGAGGACGTGATGCAGGCAGGGAGCAGCCAGCATATGCAGCAGCTGGAGGAGCTGCAGAAGAAACTGTCCTTCGACGACCCCATCAATATTCAGTTCACATCGGGTACGACGGGGAACCCTAAAGGTGCCACCCTCTCCCACCACAACATCGTCAACAATGCCTACTTCATTGGCATGCGACTTGGATATGACTGGAGGTCTCAGGTACGCGTGTGCCTGCCTGTGCCCATGTACCACTGCTTCGGCTCGGTgggtggtggcattgtcatggcCACGCATGGCATCACGTTGGTCTCTCCCTCCACTGGGTACGACGGACGCGCCAACCTGGCAGCTATGGAGAGTGAAAGGTGTACCTTTGTCTATGGCACTCCTACTATGTACATCGACATGCTGGGCCAGCCTGACTTGGCCAAGTTTGACTTGTCGTCtgtggagggagGCATCATGGCTGGTTCCCCGTGTCCACCTGAAATAGTGAAGAAGGTCATTTCTACCATGGGCATTAAGGAGTTCGTAATTGCCTATGGAACCACAGAGACCAGCCCTGTGTCATTCTGTGGCTTCCCAACAGACAATTTGGAGAGGAAGTCAGAGACTGTTGGGTGCATTGCCAGTCACATAGAGGCTAAGGTAGTTGACCCTGGCTCTGGTCAGCTCGTGCCTCTCGGGATATCAGGAGAGCTGATGATCAGGGGCTACTGTGTAATGCTGGAGTACTGGGGGGATGTCGCCAAGACAGACGAGTGCATTGCCAAAGACCGCTGGTATAAGACTGGTGACATCGCCAGCCTGGACAAGTATGGCTTCTGCCGCATCGAGGGTCGAATCAAGGACATGATCATCCGAGGAGGGGAGAACATATACCCAGCTGAGATTGAGCAGTTCCTACACACCCACCCTAAAGTCCAGGAGGCACAGGTGATTGGAATAAAGGATGAGCGTATGGGAGAGGAGGTGTGTGCCTGCCTCAAGCTGAAGGCGGGACAGGATTGCAGTGCAGAGGACATTAAAGCTTACTGCAAGGGAAAGATTGCTCATTTCAAGATCCCACGCTATGTAACATTTGTGAATGACTATCCGCTCACAGTTTCAGGAAAGATCCAGAAGAACAAACTGCGTGAGCAGACAGAGAAGTTTCTGGCACTGTGAAGGTCTGAAGTAAGGAGAGAAAGTCGGGCTAGACATGGTGGCTCATATCCCCGGCACATGGCATATGTTTTCGCTCCACTCTGCCAAAGCACCTGCTGAAATCAGTCATTATGGCTGAATTtttacaggcagcccaattcttatCTTTTATCcactaacattttttttttaaagagctaatgtgaaaagatctgatgtgattggtcaaaagaccaataatTGGAAAAGATATCTAAATTGGGCAGACTAAGGGCTGAAGATCCACTTTACAGAGCGATTGAcaattaaaggcaatgttcccgcagTCACGGAggctgcattcacggtaaacacaGAAATGACCTTTCAATTTTAAACGTGGATCTTCCGCAATATGGATTGAATGCAGCCTTAAGTGCCATCATTTGTGCCTTGTTTAGTGCAAACCTTTTTGCAGAACCCATTGGACTAATGCTATGTTTTAGCAGGCACAGTTTAACAGGAAAGCGAAGCCATGTACAGCAGTCAGCTAAACATTGACAGCCAAATGATTTTACTGTATTGACAGCCTTGAAACCACCTCAATCTGTGACTCGGAgctctattcagtctgtaaaattgaagcgttacagattccgCAATTTTATAAAATGTAAAAGGtcatttccaattgagccgacGTCTGCAGGGTTTAACGCTgaagcgggaacattgcctttacatttcagtGAAGCTGTACTTCGGCGACGCAGACCGAATAGCGTCCTTATATTACAGCTGCCTATAtgtcaaaataaaaaacatgtacCTTACCATTAAAA

Function

NR:

description
PREDICTED: acyl-CoA synthetase family member 2, mitochondrial-like isoform X2

GO:

id name namespace
GO:0006631 fatty acid metabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0005524 ATP binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K23617 ACSF2; medium-chain acyl-CoA ligase, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565037.2 False 2940 mRNA 0.48 16 18823619 18852922
XM_021565038.2 True 2702 mRNA 0.49 16 18823619 18853128

Neighbor

gene id symbol gene type direction distance location
LOC110491520 NA coding downstream 7437 18809916 ~ 18816182 (-)
LOC110491517 LOC106579299 coding downstream 58085 18757567 ~ 18765534 (-)
LOC110491515 LOC106579303 coding downstream 144229 18672341 ~ 18679390 (-)
chmp2a LOC106579304 coding downstream 197179 18622633 ~ 18626440 (-)
LOC118939514 LOC106579307 coding downstream 217445 18604985 ~ 18606174 (-)
tap2t tap2a coding upstream 9894 18863022 ~ 18875578 (-)
slc16a5a LOC106579290 coding upstream 27274 18880402 ~ 18888619 (-)
kctd2 LOC106589267 coding upstream 45615 18898375 ~ 18909532 (-)
LOC110491527 LOC106579286 coding upstream 84727 18937855 ~ 18950644 (-)
LOC110491528 LOC106579284 coding upstream 102404 18955532 ~ 19022655 (-)
G1349473 armc7 non-coding downstream 2405 18817038 ~ 18821214 (-)
G1349466 NA non-coding downstream 13873 18809511 ~ 18809746 (-)
G1349462 NA non-coding downstream 21002 18802347 ~ 18802617 (-)
G1349460 NA non-coding downstream 24277 18797861 ~ 18799342 (-)
G1349479 NA non-coding upstream 62514 18915642 ~ 18916129 (-)
G1349530 NA non-coding upstream 99719 18952847 ~ 18954943 (-)
G1349563 NA non-coding upstream 170035 19023163 ~ 19023558 (-)
G1349568 NA non-coding upstream 175280 19028408 ~ 19029256 (-)
G1349366 NA other downstream 189214 18634031 ~ 18634405 (-)
prr15lb atd4b other downstream 400433 18417572 ~ 18423242 (-)
LOC110491477 psme3 other downstream 1431665 17389099 ~ 17394265 (-)
G1347343 NA other downstream 1627490 17195330 ~ 17196129 (-)
G1347067 NA other downstream 1894187 16924522 ~ 16929432 (-)
LOC110491541 LOC106579266 other upstream 467742 19310970 ~ 19325094 (-)
G1349896 NA other upstream 607913 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 838564 19691616 ~ 19697840 (-)
LOC110491567 LOC106579249 other upstream 1477272 20330400 ~ 20334029 (-)
LOC110491585 NA other upstream 1787098 20640226 ~ 20650176 (-)

Expression


Co-expression Network