tap2t (tap2a)


Basic Information

Item Value
gene id tap2t
gene name tap2a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 18863022 ~ 18875578 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124243.1
aaatgtatttataaagccactTTTACATCAGCCAGCAAAGACGATGGATAAGCACAATTGAGATACTGCTGTAACTCTATCTATTGGCCATGGCTCATTTAAAAACATATGGGCTGGTCCTTCTCTATGACCTAGTGCTGTGGGGGGCACTGTGGACTGGGTTAGTGCTACTTGAGTTCTCCAGTAGTGGAGGACTGGTGGGGTTATGGGCCTTTGGAGCCCTAAGGTGGGCATTGCACCACTCAATCACCCTGGTGCTTTCTGAAGGAAAGCCACAGCCAGTGCGGAGGAGATGGGTGGCAGTGCTCTGCCTCTTACCTCCTGTGTTTGAAAGTGGACGTATGGTCATGGTGCCGGCATCGACTGCCAACGACCTGGGTCTGGTGCCTGGCCCAAGCATGGTGGTCTTGGCCCTGGTATCCTCCACTGTGGCCTGCCTGGCATGGGAGCTGGGCTTCCCTGATGATGGAGGGAACCAagggaaggagaagaagaggaaacaGGAGGCCAGGGCACAGTTGATGAGGATGGTGCGATACTGCAAACCAGACACCCTCTACCTGGCTGCAGCCTTCCTCTTCCTCAGCCTGGCTGTCATCTGTGAGACGTTTATCCCTTACTACCAGGGGAAGGTCATTGATACACTGAGTGGTCAGTACCAGCACAACAGCTTCATGTACGCCATTGGAGGCATGGGACTCGTCTCACTAGGAAGTGCTCTGTGCTCAGGCCTGCGAGGGGGCTTGTTCATGTGTAGCCTGTCCAGACTCAACAAGAGGATGAGACACATGCTGTTCCACAACCTGGTACAACAGGACATACCCTTCTTTGAGGAGAACAAACCAGGAAGCCTTGTCTCACGCCTCGGCTATGATGTGGACAAGATGGGACGCTCTGTGGCTCTGAACAGTAATGTGCTGGTGCGCAGCCTGGTGAAGACGGCTGGTATGCTATTCCTGATGCTGGGCCTGTCCTGGCAGCTCACCCTGCTCACCATGGTGGAGATGCCCCTCCTCACCCTGCTGCAGACCAAATATAACACATACAACCAGGAGTTCATTAAGCAGCTGCAGGACTGCCAGGCCCAGATCAAGGAGCTGGCATCCCAGGCCATTGGGGCGGTGAGAACGGTTCGCAGCTTCAGAGCTGAGGAGAAGGAGCAAGATAGGTACAACCAAGCACTGGAGAGGATGTACAAGGTCCAGGAGCACAAGGGCATCATCAGTGCCGTCCACCTTTTACTGAGAAGGGTGGTGACAGTGGGCCTAAAGGTGGCCATGCTGTTCCTGTGTCGGAGGCTCATCTCGGCTGGCCAGCTGAGCATTGGCAGTGTGCTGGCTTTTGTCCTCTTCCAGAAAGACATGGTGACCAATATGAAACAACTTGTGTATGTCTTTGGAGACATGCTGTGCACTGTCGGGGCGGCAGCCAAGGTGTTCACATTTCTGGACAGAAAGCCAGACCAGAAAGAAGCAGGAGAGCTGGCTCCTGCAAAGCTTCAGGGGAAACTTGCTTTCTACCATGTCAGCTTCTACTATCCCTCACGCCAAAATACACCCGCACTGAAGGCTGTGAGTCTGGAACTGCATCCGGGGAAGATGACAGCGCTGGTGGGGCCCTCTGGTGGCGGGAAGAGCTCCTGCGTcagcctgctggcaaggttgtaTGAGCCCAAGGAGGGCCAGGTGCTGTTGGATGGACAGCCCCTGCACTGCTACCAGCACCAGTACCTGCATCAGAAGATGGCCCTGGTGTCCCAGGAACCAGTGCTCTTCTCTGGATCTATCAGACACAACATAGAGTACGGCCTCGTGGGATGCACCCTGGAGAAGGTGAAAGAGGCTGCGAAGAGCGCCAACATCCACGACTTTATTTGTACGCTGGAACAGGGCTACGACACAGATGTAGGTGAGTGTGGAGGGCAGCTGTCTTCTGGACAGAAGCAGTGCATCGCCATAGCCAGAGCTCTGGTTCGAGAGCCACAGGTCCTAATTCTGGACGAGGCAACCAGCGGCATGGACATCAACACACAGCATGCGGTGCAGGGCGTCCTGGCAGGCTCAGTGGGCCTGACAGTGTTGGTGGTGGCCCATCGGCTGCAGACTGTGGAGAAGGCTGACCACATCATCTTCATGGAGGGCGGGGAGGTGGTTGAGCAGGGCACACACCAGGAGCTCATGGCTAGCAAGGGGCGCTACCATCGGCTCAAAGAGAAACTCTTTGAGGACTGATTAGGAATCACACAGctgtcggagagagagagagagagagagagacccacacaAAATACTTCCATTTATGAGAAGTGAAAATGTTGATTGAACTGCACACTCTATCACGAGGCATGTTTCCATAGACACAGGTTTATTCGACAAAAACAATGCCGCAAAAAATATTCTTTGTTGGTCTGACGTCATTACGTAATCGACACAACTACATGGTTGTTAAAAAACGACCAACTAAGCATATCCAAAATTAACCGTGTGTATCTATGGTTAAATGGATATGCGCCCTAAGCAGGCAATTGTCGCATCTATTCTCCATTCAAACTTAATAGAAACATAGCTAATGATACTCAATGATCAGACCTGAATATGACGCATGTTAATAGTTTTTTTTACTGCAAGAAATCCACATATATCTATTTTCCTTGCTTTGATTcacaatcaaataaaaatgtgatgttTTTTTCAGTGGCACTGAAATGTTAAAATTAAAGAACAAGTTTGTGAACACTGAAAATtagttttaaaaatatatgtataatatatataataaacatCTTTGAAAATGAGTGCAAAGGTGATCCGTGTTCGGTTCGTTCAATCAATATCTGAATGTAAACAACTAAGAAGGATAATCATTTAGattgcataaatgtatttttcttATGTCATCCATAATATTGAATTAATGCACAGCGATAGAGGTACTGCAAAAGAATACGTGTGCTAGCTGTTTTCAGAGTAAAATCTACAGTATGTGAATATCTGATGTTACCTGACCCATCGctccagctagctagcttttaCCAGGTTAGTTATAAATAAGGGCCACCAGCAAGTCATGCAAATTAGCTGCCTTCAATGCTTGTTGGCTTTACTGGCAGACAAGAGAAGGAGCTTATATTAAAAGGCTAAATCTAGCTAGCAACATCATTCACATGTCATTCACATATTTAGATGATTTAGAATTTtttggggcttgcctgttttgcatgttattttggcatgaGTACGTgtaacatatcagtttgcaaacaatgtaaaaaatatatatcattgagttaataaagctgcatacaaacatggtc

Function

symbol description
tap2a Predicted to enable ATP binding activity and ATPase-coupled transmembrane transporter activity. Acts upstream of or within response to cadmium ion. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; gill; liver; and musculature system. Human ortholog(s) of this gene implicated in several diseases, including MHC class I deficiency; aspirin-induced respiratory disease; autoimmune disease (multiple); cervical cancer (multiple); and systemic scleroderma (multiple). Orthologous to human TAP2 (transporter 2, ATP binding cassette subfamily B member).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006810 transport biological_process
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124243.1 True 3313 mRNA 0.48 12 18863022 18875578

Neighbor

gene id symbol gene type direction distance location
acsf2 LOC106579292 coding downstream 9894 18823619 ~ 18853128 (-)
LOC110491520 NA coding downstream 46840 18809916 ~ 18816182 (-)
LOC110491517 LOC106579299 coding downstream 97488 18757567 ~ 18765534 (-)
LOC110491515 LOC106579303 coding downstream 183632 18672341 ~ 18679390 (-)
chmp2a LOC106579304 coding downstream 236582 18622633 ~ 18626440 (-)
slc16a5a LOC106579290 coding upstream 4824 18880402 ~ 18888619 (-)
kctd2 LOC106589267 coding upstream 23165 18898375 ~ 18909532 (-)
LOC110491527 LOC106579286 coding upstream 62277 18937855 ~ 18950644 (-)
LOC110491528 LOC106579284 coding upstream 79954 18955532 ~ 19022655 (-)
LOC110491529 LOC106579281 coding upstream 231461 19107039 ~ 19126035 (-)
G1349473 armc7 non-coding downstream 41808 18817038 ~ 18821214 (-)
G1349466 NA non-coding downstream 53276 18809511 ~ 18809746 (-)
G1349462 NA non-coding downstream 60405 18802347 ~ 18802617 (-)
G1349460 NA non-coding downstream 63680 18797861 ~ 18799342 (-)
G1349479 NA non-coding upstream 40064 18915642 ~ 18916129 (-)
G1349530 NA non-coding upstream 77269 18952847 ~ 18954943 (-)
G1349563 NA non-coding upstream 147585 19023163 ~ 19023558 (-)
G1349568 NA non-coding upstream 152830 19028408 ~ 19029256 (-)
G1349366 NA other downstream 228617 18634031 ~ 18634405 (-)
prr15lb atd4b other downstream 439836 18417572 ~ 18423242 (-)
LOC110491477 psme3 other downstream 1471068 17389099 ~ 17394265 (-)
G1347343 NA other downstream 1666893 17195330 ~ 17196129 (-)
G1347067 NA other downstream 1933590 16924522 ~ 16929432 (-)
LOC110491541 LOC106579266 other upstream 445292 19310970 ~ 19325094 (-)
G1349896 NA other upstream 585463 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 816114 19691616 ~ 19697840 (-)
LOC110491567 LOC106579249 other upstream 1454822 20330400 ~ 20334029 (-)
LOC110491585 NA other upstream 1764648 20640226 ~ 20650176 (-)

Expression


Co-expression Network