LOC110491529 (LOC106579281)


Basic Information

Item Value
gene id LOC110491529
gene name LOC106579281
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 19107039 ~ 19126035 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946413.1
catgagtgtgtatgTTGTCCTTGCCTTATATAGAGGAAAGTTGTGGCTCCAGTAGTCTCccacattccctctctcctccctctttctctcttagcCTCTTGCGTAGAAGGACGCAGTAGCTGGTACAGCAGCCTCTCTGCTCAACCCGTCATTTACTATAGTATTTAGGCTTTTTAGCCTACTCTAACTTCCTCTGCATCGTTGAGCTGCTCAGATCACAATGAACGGGCCAGTGGACGGATTGTATGACGCTGAGCACTATGGGTCATTCATGTTTACCTCTGAGTCTGTGGGAGAAGGACACCCAGATAAGATATGTGACCAGATCAGTGACGCTGTGCTGGATGCTCACCTGAAGCAGGATCCAGATGCCAAGGTGGCCTGTGAGACTGTGTGTAAGACCGGCATGGTGCTACTCTGCGGGGAGATTACATCTCGGGCCAACGTGGACTACCAGACGATTGTGAGGGATACCATCAGGCAAATCGGCTATGACAACTCAGATAAAGGTTTTGACTATAAGACCTGTAACGTGCTGGTGGCTCTGGAGCAGCAGTCCCCTGACATCGCCCAGGGAGTTCACATTGACCGGATGGAGAATGACATTGGAGCAGGAGACCAGGGTCTGATGTTTGGCTATGCCACTGATGAGACCGAGGAGTGCATGCCTCTCACCATCGTCCTCGCCCACAAACTCAATGCCAAGATGGCTGAATTGAGGCGGAACGGCACTGTCCCCTGGCTCCGCCCTGACTCCAAGACACAGGTGACAGTTCACTACACCCAGGAGAACGGGGCGGTGATCCCTCGTAGAGTTCACACAGTGGTCATCTCAGTGCAGCACGACGACTACGTGAGCCTGGAAGAGCAGAAGGAGATACTGAAGGAGAAGGTCATCAAGGCCGTTGTGCCGGCCAGGTACCTGGACGACAACACCATCTATCACCTGCAGCCCAGCGGACGCTTTGTGATTGGCGGGCCCCAGGGTGATGCTGGGGTAACCGGTAGGAAGATCATTGTGGACACATATGGTGGCTGGGGTGCCCACGGTGGCGGGGCCTTCTCTGGTAAGGACTACACCAAGGTGGACCGGTCTGCCGCCTACGCCGCACGCTGGGTCGCCAAGTCCCTGGTCAAGTCCAATCTGTGCAGGAGGGTGCTGGTGCAGGTGTCCTATGCCATTGGAGTGGCAGCACCATTGTCTATTTCCCTGTTCACCTATGGGTCCTCCCAGAAGAGTGAGAAGGAGCTGCTGCATATTGTCAACAAGAACTTTGACCTCCGGCCTGGGGTCATTGTCAGAGACCTGGACCTGAAAAGGCCCATCTATCAGAAGACGGCCTGCTACGGCCACTTTGGCAGGAAGGAGTTTCCctgggaggtggccaagaacctcAACTTCTAGTGTGTGGTGCGGTAGGCAACGGGCAACGGTGACATGGGCAGCTGTCTACGTTGACCAGTACGCGACAGCCATGCTGGCAGCTGTTAGGGGTACAGGGGAGGGTGGGCAAGGTTGGAGTAAGGGGGAGtgtactctctctcgctctctctttggcTGAAAACTGAAAACCCAAACATCTCGGTCATAAGATAAGGGGCGGTGGCTATGACCTCAATGGCCATCAGATATGTGAGATGGCTGATTGGCATTTTCAAAGTATTTTTAACATTTACTACACACCCCCAGATATGTggcttgtctcacaaacacaacCTCCTTTTTGGTGCAGttttcatttttgtttgttttcagtaaTGCCTAAAACATTCATCTGGATAAAAAAAGAAATTGGGTTAACTACACTTGTCCTGTTGTAACCGCTAAAACCGCCTGTTGTTATTATGCAAATGACCAAATCTAAAGGTAGAATAGCCATACTTTACGTAGCAGTTACATATACTTTaaggcccaatgcagctgttttttaaAATGATCTCAATATCAAAAAGAAtgtgggtaacaattaaacacttTACTATAGTAGTtcaaattaaaatggtcaaatagctttttttgtgtgcaaaaaaCAGTGGTCTGAGTGAGGGACCTAATTGGAGGGGCCTAATGGGAAAGGATATGCATCCTGAAAAAtaactgttattggcagagagtatTGTATTTTCaacaatatgatacaaaacacagaaaactattttgactgcactgggtctTTTAATACTAATTGATACCATCAAAGAACACCTGTTAACTACACTCTATTTGACATGCTGTGATTGACATGTGAAGTGGTGTTCATTCTTAATTCCTTTTATCCAAACTTTTTCTAACAAAATTCAGGGAAGGGTTTTCAAGTAAAGTTGATCAATTAGAGGTTCAATAGTATAGTTGAGTGCTTTGTGAAACTTCGTTCAAATCAAGGCACTAATACACAAAATCTCTTGGAAAGAGACACACGACTTCTACATGCTTTTATGTTAGAACGCTTTTATTGTAGAGATATTACCAGAGGCAGGGCTAGCTTTTTCTGAGCGTGAAGGGTTTAGAATAAAATGGTATGTCGCCACATTTTGGTTCAATGTAGAAAAAAACGTCTGAGAATGTTGTGTCAGTGCTGTTACCTTGTCCCGATTGCTGTAACTGCTCGGAAACCAGATGAACTCAGATCCTTCATATACAGTTTGTCAATAGATAACAGGAAAATGTAAATAGGGTTTTGAACAATAAAACATGAACTGTATACGTCTTTTCATCA

Function

NR:

description
S-adenosylmethionine synthase-like

GO: NA

KEGG:

id description
K00789 metK; S-adenosylmethionine synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946413.1 True 2717 mRNA 0.47 9 19107039 19126035

Neighbor

gene id symbol gene type direction distance location
LOC110491528 LOC106579284 coding downstream 84384 18955532 ~ 19022655 (-)
LOC110491527 LOC106579286 coding downstream 156395 18937855 ~ 18950644 (-)
kctd2 LOC106589267 coding downstream 197507 18898375 ~ 18909532 (-)
slc16a5a LOC106579290 coding downstream 218420 18880402 ~ 18888619 (-)
tap2t tap2a coding downstream 231461 18863022 ~ 18875578 (-)
LOC110491536 lzts2 coding upstream 38657 19164692 ~ 19210407 (-)
twnk LOC106579274 coding upstream 106916 19232951 ~ 19239241 (-)
sema4gb sema4g coding upstream 118075 19244110 ~ 19279335 (-)
LOC110491541 LOC106579266 coding upstream 184935 19310970 ~ 19325094 (-)
LOC110491543 LOC106579270 coding upstream 214291 19340326 ~ 19342139 (-)
G1349580 LOC106579282 non-coding downstream 548 19105449 ~ 19106491 (-)
G1349597 NA non-coding downstream 42323 19059912 ~ 19064716 (-)
G1349569 NA non-coding downstream 77160 19029678 ~ 19029879 (-)
G1349568 NA non-coding downstream 77783 19028408 ~ 19029256 (-)
G1349563 NA non-coding downstream 83481 19023163 ~ 19023558 (-)
G1349640 NA non-coding upstream 25644 19151679 ~ 19194302 (-)
G1349700 NA non-coding upstream 96035 19222070 ~ 19222294 (-)
G1349647 NA non-coding upstream 114354 19240389 ~ 19240934 (-)
G1349645 NA non-coding upstream 115088 19241123 ~ 19242543 (-)
G1349718 NA non-coding upstream 137324 19263359 ~ 19263595 (-)
G1349366 NA other downstream 472634 18634031 ~ 18634405 (-)
prr15lb atd4b other downstream 683853 18417572 ~ 18423242 (-)
LOC110491477 psme3 other downstream 1715085 17389099 ~ 17394265 (-)
G1347343 NA other downstream 1910910 17195330 ~ 17196129 (-)
G1347067 NA other downstream 2177607 16924522 ~ 16929432 (-)
G1349896 NA other upstream 335006 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 565657 19691616 ~ 19697840 (-)
LOC110491567 LOC106579249 other upstream 1204365 20330400 ~ 20334029 (-)
LOC110491585 NA other upstream 1514191 20640226 ~ 20650176 (-)

Expression


Co-expression Network