twnk (LOC106579274)


Basic Information

Item Value
gene id twnk
gene name LOC106579274
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 19232951 ~ 19239241 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565062.2
TATTTTTATAACGCAACAAAAGCCCACAAAAGCATGCATGGGAGAAGAATTGTAAGAAAAGTTCCAATGTCTTGAACAGGTAACAAATGTGGATGAGCTGGTTCCTGAAAGGGACCACCTGTCTCTTGCAGGTGGCAGCCCGCAGCACCCCAAGGATGCCTCCCCAAAGatgcctctcttcctcccttgtCAGAGTCCTAACCAAGCCACACACCCCAAGATTTGCTATTCCTTCAAACTATCCCCAGGGACAACTATGGGGGATGTCATTGCCAATCAGTTGTACCAGGAGCTACAAAAAGGATACCAAGTCTATCCTAGACTTTTCGGTCGACCCTATTACAGTGACCGATATCAAACAATATCTACGCTCTAAAGACATCCCATTCCATGATGGCTACAGCTGCTTGCACGCCCCCAGCATGTTCCTGGACTCGGCTGTGGGTGTCCCTGCggatacagggagggagagcTTTACAATGTTCATTGACAAAACCACAGGCCAATTTCTGTGCAAGGAGACGCTGGTGGAGGGGAGCTGGGAGGACCTGCAGGACTGCCTGGAGGTGATGCAAAAGGAGGGCCAGGCCTCCCTCAGCCCTCACGTGCTGCTGGGCTACCCGGAGAGCCTGGAGGAGCGGGAGGAGAAGGAACAGGAGCTCAGGGAGGTGCAGAGGATCTGGTCCAGTGCCGTGCCCTTCTCAGACCTCCCTGACGAGGAGGCACAGCTAGTCAAAACCATGTTCCAGATCAGCAAGATCTCCAACGCCACACTCAAAAAGTTTGCGGTGAGGTTATTCAAGCCCACCAAGAGCCTGGTGTTCCCCTGGTTTGGTGGAAGGGACTCCAGCCTGCGGGGCGTCAAGCTGCTATCCGCCCAGAGCATGGAGGGTGGGACGGTGGCTTATACCGAGGCCACGGTGCCCAAGGCTGGCTCCTACCACAACCTGTTTGGACTGCCTCTGGTGGGACGCATGGACTCTGAGGTGGTGCTGACAGGCCAGGAGGTGGACACCCTGGCAGTGAGCCAGGCCACAGGCCTGCCCAGTGTGGCTCTGCCCCGGGGTGTTAACACCCTGCCCCCAGCTCTCCTGCCCTACCTGGAGCAGTTCAAGCGGGTCACCCTGTGGCTGGGAGGGGACATGCGCTCCTGGGAGGCCTCCAAGATCTTCTCCAGGAAGCTGGGTCTTAAGCGCTGCTCCCTAGTGCGCCCGGGGGAGTTCCAGCCCTGTCCTCTGGAGGCCCTGTTCCAGGGCAGGAACCTGGCCCGCATCGTCAAAGCCTCCATCCCCGCCGCCCACAAGTCCATTGTGTCGTTCAGGCAGCTCAGGGAGGACGTCTACGGGGAGCTTGCCAATACGGAACAGGTGGCTGGGGTGAAATGGACCAGGTTTCCAGAGCTCAACAGGATCATGAAGGGTCATCGCAAAGGGGAACTGACAGTCTTCACAGGACCCACGGGCAGCGGCAAGACCACCTTCATCAGTGAGTTTGCCCTGGACCTGTGCATGCAGGGCGTCAACACGCTGTGGGGCAGCTTTGAGATCAACAACGTGCGCCTGGCCAAGATCATGCTGACCCAGTTCGCCATGCAGAGGCTGGAGGAGAACCTGGACCAGTACGACTCGTGGGCCGACAGGTTCGAGGACCTGCCCCTCTATTTCATGACCTTCCATGGGCAGCAGAACATCAAagCTGTGCTGGACACCATGCAACACGCAGTCTACCTTTACGACATCAGTCACGTGATCATTGACAACCTGCAGTTCATGATGGGCCAGGAGAACCTCTCTGTAGACAAGTTTGCCGTCCAGGACCACATTATCGGAGCTTTCAGGAAGTTTGCCACCAACAGCAGCTGTCACGTCACTCTGATCATTCACCCCAGGAAAGAGGAGGACGACAGAGAACTACAGACAGCGTCCATCTTTGGAACAGCCAAGGCCAGCCAGGAGGCAGACAACGTGCTCATCCTGCAGGAGAAGAAGCTGGTGACATGCCCCGGCCGGAGGTCCCTCCAGGTGGCCAAGAACCGCTTCGACGGAGACGTGGGCATTTTCCCTCTGGAGTTCAACAAGGCCTCGCTCACTTTCTCCGCCCCAGTCAAGGGCAAGCACAAGCTGAGAAAGGTCAAAGGTGACAAGGGGGAGGGGTCAGATAATGAGGAGTCTTTAGGAGAAACTCTAAAGAAGGAGGAGACAACGGTTAAAAAGGAGAAACTAGTGAAGTTGGAGAGGCCACCCAAAGCTACCAAAACTCCCAGAGCTGTTAAGAGTCCTGCAGCAGGGAAGGGCACACCAGAGGGCGAGGGGAAGAAACAGCCATAGAGAGAAGACTTCACTCATTGATCTAAGCAAAGAACATTGTCTCAGTGTATAATGATTTGAAATGACAGAAAGGTATCGGGACTTAATTTATGGTACAGTATCATAAAAGGAAGGAAAATGTATTGCTTAATATTGATGATTTGTCACCTGGTTGGAACATGTGCTTACTTGTGTCACAGAAAGATGGAATGAAATATGTTATCTAAAGGAGAAAAGAGCTGTGTAAAATAacattagtatgatatgttgatatgttggATGTTGGCAACGAATGACCATTGAAGAGTACAGTATTGGCACTTGAAGTAACTACCCAGTGTTTCCATATTTCTATGAAATGATTATTAATACTTACAATAATGAGGGAAATAGTTTTCCTTACAAAAATTGTAATTAAGTAGGTTGAAAAGCAGCTTTTTTTGTGTTGGAATGGTGTAGGCATATAATGGTCATAAGATATTCATTCAAGTAgaccactgattggccagctcatcctcctctaaaccactgattggccagctctTCCACCTCAGGGAGATGACATCATattctatgaggaaatagcaagcattttgAAACTGGATGTTTGAGATATAAGTTCGAGAtggttttattttgttttttcttCAATTTATGCATTGGCCACAAATGCAAATATAGGacaagtcaacaacattatttgcatgagttaacagaatattaacttttTAAAAAGTGATATTTTCACTGGGCAGCTCCTTTAAAATAATAGTTGAAAGATAGTTGACTTACCGAAATGAAGTTCTGACAGTATtcctatttctactactactgtactgttatgtctGCTTTTCCCCACTCAAAGGTGGTGAAATTCTGTTAAGCTAAATTCCGTTAATCCAAACCCTTGACTGTCCATGTTATTACATGTATTGCTATATAGTAACAGCATACTGTCATAACAGGAGCTAGGACTTCTGAGGTACAGTATTCCACAAGGATAAGCACCATCACTGTATGTGGATTGTTGCAGAATGTGAACGTTACCCTCTACTGAACACAGATATAGTGCTGCTGCTTGTTTGCCTCATTAAAACGTCAAGCGCTCATGTGCAATTCTGATCCCTA

Function

NR:

description
twinkle protein, mitochondrial-like

GO: NA

KEGG:

id description
K17680 PEO1; twinkle protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565062.2 True 3434 mRNA 0.50 5 19232951 19239241

Neighbor

gene id symbol gene type direction distance location
LOC110491536 lzts2 coding downstream 22544 19164692 ~ 19210407 (-)
LOC110491529 LOC106579281 coding downstream 106916 19107039 ~ 19126035 (-)
LOC110491528 LOC106579284 coding downstream 210296 18955532 ~ 19022655 (-)
LOC110491527 LOC106579286 coding downstream 282307 18937855 ~ 18950644 (-)
kctd2 LOC106589267 coding downstream 323419 18898375 ~ 18909532 (-)
sema4gb sema4g coding upstream 4869 19244110 ~ 19279335 (-)
LOC110491541 LOC106579266 coding upstream 71729 19310970 ~ 19325094 (-)
LOC110491543 LOC106579270 coding upstream 101085 19340326 ~ 19342139 (-)
LOC110491545 NA coding upstream 172277 19411518 ~ 19432319 (-)
LOC110491546 dlx3b coding upstream 197954 19437195 ~ 19439759 (-)
G1349700 NA non-coding downstream 10657 19222070 ~ 19222294 (-)
G1349640 NA non-coding downstream 38649 19151679 ~ 19194302 (-)
G1349624 NA non-coding downstream 83936 19111473 ~ 19149015 (-)
G1349580 LOC106579282 non-coding downstream 126460 19105449 ~ 19106491 (-)
G1349597 NA non-coding downstream 168235 19059912 ~ 19064716 (-)
G1349647 NA non-coding upstream 1148 19240389 ~ 19240934 (-)
G1349645 NA non-coding upstream 1882 19241123 ~ 19242543 (-)
G1349718 NA non-coding upstream 24118 19263359 ~ 19263595 (-)
G1349720 NA non-coding upstream 26948 19266189 ~ 19266436 (-)
G1349721 NA non-coding upstream 27436 19266677 ~ 19267100 (-)
G1349366 NA other downstream 598546 18634031 ~ 18634405 (-)
prr15lb atd4b other downstream 809765 18417572 ~ 18423242 (-)
LOC110491477 psme3 other downstream 1840997 17389099 ~ 17394265 (-)
G1347343 NA other downstream 2036822 17195330 ~ 17196129 (-)
G1347067 NA other downstream 2303519 16924522 ~ 16929432 (-)
G1349896 NA other upstream 221800 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 452451 19691616 ~ 19697840 (-)
LOC110491567 LOC106579249 other upstream 1091159 20330400 ~ 20334029 (-)
LOC110491585 NA other upstream 1400985 20640226 ~ 20650176 (-)

Expression


Co-expression Network