sema4gb (sema4g)


Basic Information

Item Value
gene id sema4gb
gene name sema4g
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 19244110 ~ 19279335 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567323.2
cgcgggcGAGCGAGCGACACCGGTGTACGTCTAGAATACACATGTGCAAAAATATGCTGGTTTTGACAGAGCAGAGGCTGGCATCTGCGCACCACTTCACCACGGAGGGACTCAAATAATTATTCTTCAGAAGATAATTCTCTAGTTTCGTAGAAGATTTTCAAGAGTGAGCCTTTCTACAGACTGAGAATGACCTAGAAGCCACCACTGCTGAGCCCAGCAGAGCAGGATATCATTCTTGTGTGTGTAAGCAACAAGGTGTGTGACAGCAAACAGGGCTCCAGCTGCACCCGGGTCAATCTGTCAAACATGGAGGGCCACGTCACACTGCTGCCCCCCCTGCTGCTGCTCCTCTGTAGCCTGTCAGGGGTGTGGGGGTTCCCCTTCGGCCCCGTCCTTGACATGGACGTCACCCCCAGGACCACAGTGTTCTCCCAAGGCCTGTTAGGTTGCCAGCGTTTCAGCAGCCCGTCTCAAAACTACAGCACACTACTACTGGAGGAGGACAATGGGGTGCTATACGTGGGGGCCAGGGGGGCTCTCTATGCCCTGGACACCACCAACATCTCCACTCCTGGCAACCTCACGATTGACTGGGAAGCTTCGGCCGAGCAGATGAAGCAGTGTCTCAACAAAGGAAAAGACAATCAGacagagtgttACAATCACATCCGCGTCCTACAGAGGTACAATGAGACTCACCTGTACGTCTGTGGCACGCACGCCTTCAGGCCCCTCTGTGCTTACATAGATGTGGAGCGCTTCAGTTTCTCCTCTGGCTTCGAGGAGGGCAGGGACAGGTGTCCCTACGACCCAGCCAAGGGCTACACCAGCCTTCTTGTGGACGGTGAGATGTTCTCAGCGACCCAGTATGAGTTCCGCAGCTCTCCGGACGTTCGTCGGAACTTCCCCTTCCCCACTCTGAGGACAGAGGAGGCCCCGACCAGGTGGCTGCTGGAGGCGGACTTTGTGGGCTCAGCGCTGCTGAAGGAGAGTGTCAACAGCTCGCTCGGCGACGACGACAAGATCTACTTCTTCTTCACGGAGAGGAGCCAGGAGcagatggcctaccccagccagaCCAGGGTGGCACGGGTTGCCCGCGTCTGCAAGGGTGACTGGGGTGGCCAGAGGACCTTGCAGAGGAAGTGGACATCCTTCCTGAAGGCTAGACTGGTGTGCTCCGTTCCTGACTACGAGCTCCACCTGAATGTGCTGCGTAGCGTCTTCGTACTGCAGGGCCCAGACGTACACAGCACCGTCTTCTACGGGATCTTTGGCCTGGAATGgaAAAATGTCAAGGTGTCTGCGGTGTGCCAGTACTCCTTCACAGATATTCAGAGGGCCTTCGAGGGGCCTTACATGGAGGTGCAGGATTCCAAATGGAGGGAATATAGAGGGAAGGTTCCGGTACCAAGACCTGGCTCGTGTATCACAAACATACACCGGTCCCAGGGCATCAACTCGTCCCGTGACCTCCCAGACAACGTGTTGACCTTTGCGAGGCGCCACCCCCTGATGTCTACACAGGTCCACCCCATAGGAGGGCGCCCCCTACTATTCAAGAGAAGTGTCAATTACGTCAAGATGGCCGTGCACCGtgtggcagctctggacagacacgTCTACACCGTGCTCTTCTTGGGAACTGACGAGGGCTGGCTGCACAGGGCTGTGGAGGTCGGAGGTCAAATGCACATCATAGAGGAGCTGCAGCTTTTTGAGAACCCTCAGCCTGTAGACAGCATGGTCATCTCCCAGACACAGGGAAGTATCTATGTGGGCTCCAACTCTGCAGTGCTGCAGGTCCCCTTGTCCTCCTGCCAGCGCTACACGTCCTGTTTCGACTGTGTGTTTGCCCGGGACCCCTACTGTGGCTGGGACGGGGCGCTGTGTGTGGAAATATCCTCACGCACAAACAGCTCCAATCTAACCCAGGATATACAGAAAGGCAACAGAGGCTGTGACAACAGCACAGGAGCTGtaGTCCACCGCAGGCGTACAGTGATGGCTGGGGACGACATCCTCCTCCAGTGCGAGCTGCGCTCCAACCTGGCCACGCCCCACTGGACCCTGGATGGTCACGAGCTCCAGGGCTATGACCTCGACTCGGGCCACCGCGTGGGCACCGATGGCCTGCTCCTCATAGGCGCCCGGGCCGACCAGAGTGGAGACTACCACTGCTACGCCGTGGAGAACGACGTGTGGGTGCCAGTGAGGCTGTACACGGTGAAGGTGCACCCTGACCTGCCCTTCCCTGTGGGGCCAACAGTCACAACGAACACTTTatcaaccaccaccactaccgccCCACCAAGCACTTTTCTTACCCCCAGCACCCCCACCGAGCAGCCCCTGCCCTCCCCACCTGCTCCCCTCCCCTTTGGACCAGAGTTCCAGAcctacaggcacatggaggccatgTATATCTCCCTGGTGGCTGTGCTGGGCGGGCTGTGCCTGGTGCTGACCATAGTGTTGCTCTACGTCAGCTTCTGCAAACGAGGGCCCTACCAGGGCCGCAAGTACTCCCAGGTGGGGCTGCCCGAGTCAGGGGCCGCAGCCGAGAGGAAGAAGAGCTCCCATTCTCATCTGGAGCTCAAGACCATGTCCATCCACTGCAACGGCAGGCAGGACAGCAAGCGCGGACGCCGCTCCCTGTCGGCTTCTAACGTGGACGACGTGGGCGACGGCTTCCTTCAGATTGTGCCTGGGGGAGGGTCTCCGGGAAAGTCGCCGCCCCCTCCCGCCCCGCCTCTCCCAATGCCGCCGCCCCTGCCTTCCTCGGCGTACGCATCGTCAGAGTACGCCAACGGGATGTCGGCCACGTTACCCAGTGTCCTTCGCAAGATGAACGGCAACAGTTACGTGCTGCTGAGGCAGACGGCGGACCCCGAGGGGAGCACGTCTCCCCTCTACCACTCGTTCACCGAAGAGCTCAACCGCATCCTAGAGAAGAGGAAGCACACGCAAATGGACCCCCAGCTGCCAGACGAGAGCTCtgtctagccccccccccccccctcactttcCCATTGATCTGTTTTATTGGTTTAACCCAACTACCCCAGAGTGCCCCCAAGAGGCAGGGAGGTCGAACTTTTGTATTATACTGCTGCTCTTTACCCAGTGTCAAAGCAACTTGTGGGAGTATCCATCCCTAAAACTCAATGTGCAGCTTCCTGTGACTCGAGACAAGTGGCCCACGTTCCCTCCTGAACACTGGAGTAAAGAAGACTCGCTGACTTTGACCAAACTGGAGCAGTCATTGATGTAGTCATGGTAACCATTTTGGACACACATTCTACTATTACATGGACCCTTTGATTGACTTTCAAGGACCTAAGGTCACATACATGACACATACACAAGTTAGTTACAATCCTACCTCAGATCCTTACCCTATTGGGGAAGTAGGGTCAGTGATGGTCTGGTCAGCAGGCACACTGACAGCGAGTGCTGTGGTGTATCGTCGGACACGGGACGATGAGAGCCCAGGTCATATGACCAACGACCATGGAGTGAGATGGTGATGCACGTAAGACTGTGAGGAACTACCAAATCCGGTATGAACATTATAGACCATCGTCTAAACTATTGAGTTCGGAGAACAATGGGTACGGTAGTTCAGTGCCATACACGTCTAAGATGGCTCTTATTGACCCAGGCCTACAGAACTTCATATGAGAGCAAATATGGTTGGACAAATAATACATTGCAGTCATAACTTAATACCACACACTTATCTTCATTTTCTTTTGTGCTTTATGTAAATAGCAATAGTATCGCTGTGGCAGCCATCAGTAGCAACAATGCCAGTTGAAATGGTTGCGCCGAAACCAAATTGAAATGGAACTTTTTAGCATCTTTGTGTTGTTAGCGTCGGATTGTGTCAAAGGGGGAAAACAGCAGAATGGATAGACGGCAGGTTTTATCTCAACTTGGCGGGGATGAAGACTATCATTAAAGAATGAAGACAATCGTTAAGGACTGATCTCTGGTCAGATTGATCAGAGAAACTgagtgatgataatgatgatgatgatgatggatcTGATTGCCAGAGATGTGTGAGCCCAACAGGAGACCAGAAGGCAAAGATATGCAAGAAGCCAGATCACATTGATCTCAGAAGAGATGGAGAAGATGGATAGAAGGAGTGTGTGAGGAACCCTGATGATCTGAGCCAATGACTGCTCAAAATACACAGAAGGACAATCAGCACGTGAAATCTCCAATGGCAGGGGACTTGGATATGGTTATTGTAGTGTACTTACTACTTACTGTCAATTGGAAAATAGGCTGGCTACTACAGTCAAATACGCACCTCCAGTATATACTGTATGCCCCCATAAACATTGTGGAACACTTATTTCAACAAACATACTCGCTCACGTCATACTGTACAGACATGACAACATTCAAATGGAGGTTTAGACAAAGGCCCagtgcagccgtttttatctcaatatcaaatcatttctaggtaacaatgaagtaccttactgtgacaaaaatagcttcttagcaaagggcaatttctcaagcaagaatgttgctgtgactgtctgggagt

Function

symbol description
sema4g Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane.

NR:

description
semaphorin-4G-like

GO: NA

KEGG:

id description
K06521 SEMA4, CD100; semaphorin 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567323.2 True 4576 mRNA 0.54 16 19244110 19279335

Neighbor

gene id symbol gene type direction distance location
twnk LOC106579274 coding downstream 4869 19232951 ~ 19239241 (-)
LOC110491536 lzts2 coding downstream 33703 19164692 ~ 19210407 (-)
LOC110491529 LOC106579281 coding downstream 118075 19107039 ~ 19126035 (-)
LOC110491528 LOC106579284 coding downstream 221455 18955532 ~ 19022655 (-)
LOC110491527 LOC106579286 coding downstream 293466 18937855 ~ 18950644 (-)
LOC110491541 LOC106579266 coding upstream 31635 19310970 ~ 19325094 (-)
LOC110491543 LOC106579270 coding upstream 60991 19340326 ~ 19342139 (-)
LOC110491545 NA coding upstream 132183 19411518 ~ 19432319 (-)
LOC110491546 dlx3b coding upstream 157860 19437195 ~ 19439759 (-)
LOC110491548 LOC106579262 coding upstream 275757 19555092 ~ 19590896 (-)
G1349645 NA non-coding downstream 1567 19241123 ~ 19242543 (-)
G1349647 NA non-coding downstream 3176 19240389 ~ 19240934 (-)
G1349700 NA non-coding downstream 21816 19222070 ~ 19222294 (-)
G1349640 NA non-coding downstream 49808 19151679 ~ 19194302 (-)
G1349624 NA non-coding downstream 95095 19111473 ~ 19149015 (-)
G1349728 NA non-coding upstream 3803 19283138 ~ 19284148 (-)
G1349732 NA non-coding upstream 18391 19297726 ~ 19297932 (-)
G1349758 NA non-coding upstream 69276 19348611 ~ 19348908 (-)
G1349820 NA non-coding upstream 122029 19401364 ~ 19401620 (-)
G1349871 NA non-coding upstream 161606 19440941 ~ 19441203 (-)
G1349366 NA other downstream 609705 18634031 ~ 18634405 (-)
prr15lb atd4b other downstream 820924 18417572 ~ 18423242 (-)
LOC110491477 psme3 other downstream 1852156 17389099 ~ 17394265 (-)
G1347343 NA other downstream 2047981 17195330 ~ 17196129 (-)
G1347067 NA other downstream 2314678 16924522 ~ 16929432 (-)
G1349896 NA other upstream 181706 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 412357 19691616 ~ 19697840 (-)
LOC110491567 LOC106579249 other upstream 1051065 20330400 ~ 20334029 (-)
LOC110491585 NA other upstream 1360891 20640226 ~ 20650176 (-)

Expression


Co-expression Network