LOC110491541 (LOC106579266)


Basic Information

Item Value
gene id LOC110491541
gene name LOC106579266
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 19310970 ~ 19325094 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565071.2
AATGCGATTCCGATCTCCTACTTTCTCGAACATCTCTGCCTGAAGCTGAGCTAAAGGTTGCAGACGCATTCGATTAGACTTTTCTTCCTGTCTCGGATTCAGGAATGTACATGTGAAAGAAACGACTCTGTGAAATGGCATCATGCGATACAATGTTGCAGTCCACGTAGGAGTCAAACAAGAACGACAAAGCAGCGGGGAAAAATCCAGTTAATATCGCTTGTTTTGGACATCGCTAACTGGCTAGTTAACGACGTTGACCCAACAATAATACGCGTGTCATGTGGGAGTAACTCTCATCCCTGGAGGCAAGATGTTAGCCACACAGACCCCAGATACAGGGCCAGAGGCAAAAGACGTCAAGCAGTGGATTAAGGAGAAGTTGGCGTGGTCACTCAAGGCGTTGCAGAAGCGCTACGTGACAACCGATGTCGTGGTTACCAGCGAGGATGGTGACGCCAATCTGCTGTGCTGCGCACTGGAGGCCATCTTTATCCACGGCATCAAAAGCAAATATGTTCGCTCCGAGGCTGGGGGACGCGGCAGGAAAGGGGGGTCCCGGGGAGCCCTCCCCCAGCCTGTGTTCTGGAGCCTCCTCAAGACTGTCACTCACGGTGACGTGATCACGGAGCTGGAGAAGCTGAGCTTCGTGGGTACGGACACGGGTCGCTGCCGGGCCTGGCTGCGGCTGGCCCTCAACCACGGCCTAATGGAGTGCTACCTGGCCTCCCTGTTCCGCGAGGGCTCCAAACTGCAGGCCCACTACCAGCCCTCCGCCCTGCTTCTGGACCCTGAGGAGCGTGAGGTGCTGCTCAGTTACATCCAGGGCCTGGCCTCCCTCACCTTCAACCTCTCTTACAAATCGGCCGTGCTCAACGAGTGGACCACCACCCCTCTGGCTCTGGCTGGCCTCTGCCCTGCCGCCCAGGCTGAAGCGCTCGACCTCCCCTTTCTCACCAAGCGCAAGGAATCCTATGATACGGTGTCACAGTCGTCCGGCGGGTCGGATACGGTTGAAGTGCAGCGAGGGGGGCCAGGGGTGCTGGGGAAGGGGATTGGGGGGGTCTCAGGGTTTAAGACCCCACTGAATTCGTCCAATTTGAGCCTGGACACCACAGGGTCGTCTCAGCTCTCCTCCAGTCTGAGCTCTGACAGTCTGCTTCAAGGTCACGACCCCAAGAGCCCAGACAAGGAGCCCTGGCCATGTGACCTGGAAATCTCCAACATGGAGAACAATGGCAATGCCAAGAGGCCTCTCAAAGATGTTCTGGCAGACTTCAGGGAGAGTGCCCATTCCAGTCAGGACTCCATGCGCGAGGATTCATACGTGTCCACCCCAGGCGCAGACCACCTCTCTGAGAACACTGCCTTCAGTGGCTCCGACAGCGAGACCCAGGGACATGTCACACATCTCACTGGCCCCTCTAACCCTGCTTCACTGGGGTCAGACCAGGAGGAGCCGTCCACCAAAACCCACGCCCCCTCCAACGTGTACTCGCACATTGAAGGGCCCTCCAGTCCCAGTGACTGTGTGGAGAGCACATCGACAACTCCTCACCTGCCTGTCACTGAGACGCCACAGGAGAAAAAAACAGAATATTCTGTTAAGAGCGCCTCGGAGCCTTCAGCCTACATGAACCTACACCGCACTACCAGCGTGCTCAGTCGGACGGTGTCTACAGACTCAGTCACACATTCCCACTCCTGGATCTCTGAGGATGACATCTATAAGCCACACCTTGAGAAACTGGCTGACCCCGATGAGTCTTTGCTAGGGTCTGGCCCAGCTTGTGTGAACGGATTTACCTCTCCCCCTCTAGAGCCCGAGACCCCCCAGTCCCCCCCCAGCGTGGTCCACCGCAGGCAGATAGGCCTCTCCAACCCTTTCCGCGGACTACTGAAGCTGGGACACCTGGAGCGGCGGGGCACGGTAGGCATGTGGCGCGACTACTACTGCGAGCTCTCGCCCTTCGAGTTCCGCCTCTACCTGAATGCAGAGGAGCGCACCTGCTGCGACAATTGCTCCCTGCTGCGTTGCGAGGATGCCTGCGTCACCTCGGCCGAGGGCCGCTTCGACCTTGCCTTCCCCGGGAAAAGGCTCCTTATGCGGGCGGCCAACTGCGATGAGGCCGAGGACTGGGTGGACCGCATCACTGAAGCCGTCAACAAGTGCCGCCCGCTTCACCTCCTCGATGACCAGTGGGAGGTGCTGCAGCTCTCTGACAGCAGTGTAACCCCGGATGAGCCCCCAAAATCTTCCCCTTCATCCCCCTCCTCCGTTCCCGCCAGTCCCGATCGAGGGGGGGCTGTGGTTGAGCAGGAGCAGCagctggagctggactggacgcgtCCCACAGACCCAGAGTCAGACGCCATTAAGGAAGCAGTGCTGTACTTCTGCCAGGACTCCGAGGCTCGCAACTGGACTCCTCtcgtcttctccctctccttagaGACTCTCAAGGGCTTCCGGATGCAAGACGGGAAGAAGGTGCTGCGCTGCTCCCACCCCATCGAGGGGATCCGGGACGTGGTCCCAGACGTTTCTATGGGCGGACCAGCCTTCTTTAGGGTCGTAACGGCCAGGGATACGCTCAAGCTGAGGGCCAAGAGCTCTGAGGAGGCACGTGCCTGGAGGGGCCTCATCAGGGGAGCCCTGGACTCCTACCTGGAGAGTGGAGAAGACTGGGAGCCTGAGAGCCCCGGGGTGGCCCCTGGGGCGGGAGGGAACACCCACAGACTGGTGCAGCATAGACTGAAGGGGGACGGGGTGCTGCTGGCCCATCTATGCACAGTGCCCACAGAGAAGGGGCTGGACCTTCAGGGCTTCAAGTGTGCAGGTTGTCCAAAGGTGATAGGCGTCTCCCGAGGGAAAACCAGACTGTGTGAGTTTTCAGGGCAGTACTACTGTGACGCTTGTCACCAGGGCGACACCATCGTCATACCCTCCCGCATGGTGCACAACTGGGACCTCGCACCTCGGGAGGTCTCCAGGCATGCCCTTAAGCTGCTGGCTCAGATTGAACATGAGCCCCTGCTCAACCTTGACCTTTTGAACCCTGACCTGTGGGAGCATGCTGAGGCCATGGCCCAGGCACAGAGCCTCAGACAGAGGCTGCGTCTCCTAGGAGACTACCTGCTCACCTGCCGCAGCGGAGCATGCAAGAACATCcagaccagACTGGGTCCAAGGACATACTTATTAGAATCAAGCCATCTCTACAGTGTCATGGACTTACGACAGatagCGGAGGGAATGTATGTGGCCTACCTGAACACTTTGATCCAGTTTGCCTCCAACCACGTCCACCACTGTGACCTTTGCACCCAGAGGGGCTTCATCTGCCAGATCTGTCACACCAGTGACATCATCTTCCCCTTCCAGTTTgacaccaccaccagGTGTAAAGAGTGTAAGGCCGTGTCTCACGTAACCTGCAAGGCCAAGTCGCCTTCCTGTCCACGATGCCTGCGTCTTCAGAGGTACCTCGAGAGAGATCTGCAGGACTAACCGGCAACCCTGCAGGAATGGTCTTTGTGACCCAGTGGGCTTCCCATAGCTGCAGAGACCTATGAAATGACAATAACAGACATTGACATCCTGCTTCTAGTTTCTTTTTTTCTACATTAATTAACCTCAAGTGCAATTAGGAAGTGCGACTGTATGGACCGACCACAGACCAAACATGATCAACTGAACTGGATAGTGGTCGAGCCAGGAGCTATTTGTCAACTTGCACTAACATGGAGAGGTTTCTGCTATTGACATGATTGACAAGGTGAAGCAAGCTGATATGTTCTTACCTCTGAACTAGCTCTACGTCATGAGTGTCCAAGCCAAGGAATCATCTGAACAATATAATCCAGTAAAGGATGATGCCAAGAATCTCCTTGATGCAATTTCTATGACATTTATACATTGATGTTGTCATTGTTTGGGGGGCTTGTGGTGTTTTGTTACCTAGTTATTTCATGTTTACAGGAAACGGCTCGGTGTAAATTTGTACAGGACTTTCTGGGAAGCTCAAAGGAGCAAGTCACtcatataaaaataaatattaaactGCTTCCAGTTCCACAAGACGGGATACATGTATACGCCTGAAGGAAAAAAACTGCACTTGAAAACGTTCTCAAACTTAGACTGTGCCTTCGTTTGGATTTTTTACTTTTACACTCAAAAACATAATGTTCCATTGATTGTAGAATTGTGCATCATGCAACATCACTGAAGTTAAGAAACGGACGATTTTAGGTACTGTAGGGTCAAAGCATATACTGTCATTATTGAATGTTAATTGCCAAATGTCAACAGTTGTGAGTCTTGATCTTGATACAAATCCATCTTGATACAAATCCATTAATTCAGAATGGGAATTTCTTAATGAATTTCTTGATGTTTTCACCATCTGATAAGTTCTGACCACATAAAGAAACATTATTCTGCCCAAGTTATAATAGCTAGTCATTAATTAGATACATTGGGTTATGATTTATGCTCCACTTTACCCTGAAACCTTTTGCTGCAAAATATCAGTAGTTCCAGGCTAACATTGAAAAGAAGCTTTATAGTCTTGAGAAATTTGTTCCCTGCCCATTGTGGTATCCTACCAGTATGATAAAGCCATATGAAATAACAGAATATTGATTAGCATAACAACAAATGCTAATGTTGCAGCAAAACCAAAAAGCAGCTTTGTAGAGTGAGTGTTGGTTCGTCAATGTTCTTGCTTCGTACCTGAACTTCTCAATGTTTCAGGATATTCTAAATCATTTTGCATACTTGCACCTTAACACGTTGGTATGACTGTTTATCCTGTAGTTATTTTTATTCAATAGTTTCAGCCAGTTGTCCTCCCAGAGAAATCATGATTCTTTCAAAGGGTATATGGCCTTTTTAATTATTTAATGTATAATTGTGTGGGAATGCTTTTACCATTCAACCATTGTGAGAAGTTGTCATTATTTGAAATGTTAACTGAAGGAAATGGATGGCTTTCCTGATATCTGACGCCGAGATCATGTAAGACGATGTGTAAAGCAGAATTACGTACTGAAAGCAGAGTCCTGGAATTATGTTACACTATGCCACTGGGCTCCAATGGTTACTCACGAGGTGCCAGAAAATCATTACATCTCTTACCCATGTTTTTATGAGGTATATCAAGGTTTTATTTGTAGTTAGACTGACTTGTACACATTCACAGCTAAAAGCTGAATTGCAGTATACAGGCAAAAGAAGAAAGAAGATAAAAGTTGAAGCAAAAGATATGGCATGAAGTCTCTAGTCTTGACAGCTTCCGATGGGGACTGCTCTTGGTGTGAAGGTCTCTATTTGTGTGGTCATCTTATAAATGCtcattattatattatgatgAACATAATAAAGACTATCTAGTTATCA
>TU1542973
TGAAGCTGAGCTAAAGGTTGCAGACGCATTCGATTAGACTTTTCTTCCTGTCTCGGATTCAGGAATGTACATGTGAAAGAAACGACTCTGTGAAATGGCATCATGCGATACAATGTTGCAGTCCACGTAGGAGTCAAACAAGAACGACAAAGCAGCGGGGAAAAATCCAGTTAATATCGCTTGTTTTGGACATCGCTAACTGGCTAGTTAACGACGTTGACCCAACAATAATACGCGTGTCATGTGGGAGTAACTCTCATCCCTGGAGGCAAGATGTTAGCCACACAGACCCCAGATACAGGGCCAGAGGCAAAAGACGTCAAGCAGTGGATTAAGGAGAAGTTGGCGTGGTCACTCAAGGCGTTGCAGAAGCGCTACGTGACAACCGATGTCGTGGTTACCAGCGAGGATGGTGACGCCAATCTGCTGTGCTGCGCACTGGAGGCCATCTTTATCCACGGCATCAAAAGCAAATATGTTCGCTCCGAGGCTGGGGGACGCGGCAGGAAAGGGGGGTCCCGGGGAGCCCTCCCCCAGCCTGTGTTCTGGAGCCTCCTCAAGACTGTCACTCACGGTGACGTGATCACGGAGCTGGAGAAGCTGAGCTTCGTGGGTACGGACACGGGTCGCTGCCGGGCCTGGCTGCGGCTGGCCCTCAACCACGGCCTAATGGAGTGCTACCTGGCCTCCCTGTTCCGCGAGGGCTCCAAACTGCAGGCCCACTACCAGCCCTCCGCCCTGCTTCTGGACCCTGAGGAGCGTGAGGTGCTGCTCAGTTACATCCAGGGCCTGGCCTCCCTCACCTTCAACCTCTCTTACAAATCGGCCGTGCTCAACGAGTGGACCACCACCCCTCTGGCTCTGGCTGGCCTCTGCCCTGCCGCCCAGGCTGAAGCGCTCGACCTCCCCTTTCTCACCAAGCGCAAGGAATCCTATGATACGGTGTCACAGTCGTCCGGCGGGTCGGATACGGTTGAAGTGCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565071.2 False 5404 mRNA 0.51 12 19310970 19325094
TU1542973 True 983 TUCP 0.57 4 19320870 19325054

Neighbor

gene id symbol gene type direction distance location
sema4gb sema4g coding downstream 31635 19244110 ~ 19279335 (-)
twnk LOC106579274 coding downstream 71729 19232951 ~ 19239241 (-)
LOC110491536 lzts2 coding downstream 100563 19164692 ~ 19210407 (-)
LOC110491529 LOC106579281 coding downstream 184935 19107039 ~ 19126035 (-)
LOC110491528 LOC106579284 coding downstream 288315 18955532 ~ 19022655 (-)
LOC110491543 LOC106579270 coding upstream 15232 19340326 ~ 19342139 (-)
LOC110491545 NA coding upstream 86424 19411518 ~ 19432319 (-)
LOC110491546 dlx3b coding upstream 112101 19437195 ~ 19439759 (-)
LOC110491548 LOC106579262 coding upstream 229998 19555092 ~ 19590896 (-)
mpp2b LOC106579259 coding upstream 311242 19636336 ~ 19691342 (-)
G1349732 NA non-coding downstream 13038 19297726 ~ 19297932 (-)
G1349728 NA non-coding downstream 26822 19283138 ~ 19284148 (-)
G1349721 NA non-coding downstream 43870 19266677 ~ 19267100 (-)
G1349720 NA non-coding downstream 44534 19266189 ~ 19266436 (-)
G1349718 NA non-coding downstream 47375 19263359 ~ 19263595 (-)
G1349758 NA non-coding upstream 23517 19348611 ~ 19348908 (-)
G1349820 NA non-coding upstream 76270 19401364 ~ 19401620 (-)
G1349871 NA non-coding upstream 115847 19440941 ~ 19441203 (-)
G1349879 NA non-coding upstream 123193 19448287 ~ 19448554 (-)
G1349884 NA non-coding upstream 126146 19451240 ~ 19451546 (-)
G1349366 NA other downstream 676565 18634031 ~ 18634405 (-)
prr15lb atd4b other downstream 887784 18417572 ~ 18423242 (-)
LOC110491477 psme3 other downstream 1919016 17389099 ~ 17394265 (-)
G1347343 NA other downstream 2114841 17195330 ~ 17196129 (-)
G1347067 NA other downstream 2381538 16924522 ~ 16929432 (-)
G1349896 NA other upstream 135947 19461041 ~ 19461815 (-)
LOC110491553 LOC106579383 other upstream 366598 19691616 ~ 19697840 (-)
LOC110491567 LOC106579249 other upstream 1005306 20330400 ~ 20334029 (-)
LOC110491585 NA other upstream 1315132 20640226 ~ 20650176 (-)
h3f3d LOC107388308 other upstream 1495605 20820699 ~ 20823171 (-)

Expression


Co-expression Network