itga3b (itga3)


Basic Information

Item Value
gene id itga3b
gene name itga3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 19492541 ~ 19549363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946427.1
AGGAGCGGACAagcgggaggggagggaggagaagcagACATCGACACCTAGGCAGTGGCAGTTATATCCACAAGACGAGAGGGGATAGACGTTTCTCAATGGAGTGCGTATTTTGAACCATAGCCTGTACAGGGACCTCAGAGTGGAAAAAATATTTTTCAATCCGGCGTTGATCGTGCAGCTGCGGGAAGGGACAATTGCGCGCAAGGAATAAACATGGCCCCAAGTCTATATCTCCACGGGGCCTTGGCTGTGTTTTGTGTGACTCTAACCTGCAATGGATTTAATATAGACTCACGGTTTCCAGTTATCAAAGAAGGGAAAACCAAGGGCAGTTTCTTTGGATTTGCTGTTGCCTTACACAAACAGACGGAAGGGTCCACGAAATACCTTCTCCTGTCAGGAGCACCCAAGGAGAAAGCCCTGGCTCTGAGGAACGTCAATGAGACGGGCGCCATCTACTCCTGTCCTGTCACCACAGAGCTTAACGACTGTGAAAGGATGGACTTGGTCAGCTCCACGGACTCGTCTGAGATGGTGGAGGGGATGTGGCTGGGAGTGACTGTGGCCAGCCAGAGAGACCTGCCAGGGGGTCGAGTGCTGGCTTGTGGGCATCGCTACGTGAAGGTGGTGTGGGGGGGCGCGGAGGAGCAGCTGCGGATGGTGGGGAAGTGCTACGTCAGGGGCAATGACCTGACCTTCGACCCCAACGACGAGTGGCAGGACCACAGCTACGAGGTGTGCAACCCCAACTTCGACATGGATCTGGAGGGCTTGTGCAACATGGGCATCTCGGGGGGCATGACCGACACGGACGTCTACATCGGCTCTGTGGGCAGCTACGTGTGGCAAGGCAACGTTCATGTAACGTGGAGAGACCCTGAGCCAGGAAACGCGTGGGACTCAAGTGTCAAAGACTTTGGGCAACTGAACAGACGATACAGCTACATGGGTTACTCTGTCAATGAGGACAAGAAGCTGCTGAGTCAAGACGACTTCACGGTAGTGACGGGGTCTCCCAGAGATGAATCCAAGGGCTCAGTGATGCTGGCTAAGAAGGGCAACATAGCGTTGGTGACCATGTTCATCATCCCAGGAGAACAAGTGGGCTCGTACTTTGGGAACAGCCTAGCTGTCACCGACCTCAACAATGACAACTGGAATGACCTGATCGTAGGTGCCCCATTCTACTTTGACCgtcagaaggaggagggaggagcggTGTACGTCTTCATGAATGAGAACGGCTCTTTCCAGAAGACACCTAGCATGGTACTGAAGGGTCCTACGGCATCTGGTTTTGGATTCGCCGTGGCAGCCATTGGCGACGTCAACCAAGATGGATTCCAAGACTTTGCAGTAGGAGCCCCATTCCATGAGACTGGGAATGTCTACATCTGGATGGGAAGCAAGAAGGGAATCTCTGAGGAGCCTAGTCAGGTTATTGAGGGGAAGTCAGTGGGTAGTGGTGGGTTCCAGACCTTTGGCTATTCCATCAGTGGAGGTATGGACATGGATGAGAACAGTTACCCTGACCTCCTGGTTGGTTCTCTGGATGACCGCATCGCTCTGCTCAGGGCTCGTCCAGTTATCCATCTCTCTAAGAACTTCACCGTGCTGCCAGAGATTGTGGACCCTAACCTTTGTCCCCGTGGAAACAAATCCTGTGTGACTGTGACAGTGTGTTTCTCCTACACACTCAGCAATGGAAACAAAGATTTCAAGAAAAACATCATGGTGAAGTACACAGTGGAAGCCGACATGCATCGCCGGAGCCCTCGAGTTCTCTTCCTTGTCAATAAGCTTGCCACCTACACAGGCCTCCTTACCATGCCATCTCCCAAGACCGAGTGTCAGGTGCTGGAGCTCAGACTAGAGGATCCTGTGAGGGACAAACTGGAGCCGGTGGTTTTCTCCCTCAACGTGTCCCTGGATGAGCAGAAACCCAAAGTTAGAAAGGCCCTGCAGAACCTGGACTCCTACCCTGTACTGAGCCACAAACAGAAAGTGACTGAGAGGAAAGAGATCAACTTCCAGAAGGAGTGTGGCTCAGACAACAGGTGCACCAGTAACCTGCAGCTAACAGCAGCGTTTGCTAACGAGTTACTGAAGCCTTACCCCAGTCAGGGGAAACGCCAATTGCTGCAGTACAGCAGTAATGTGAAAAAGGTGGTGCTACTTGTGGAGATAACTAACGTGCCAGGCCCTGGGAAGGTAGCTGAGGACGCCCACCAGGCCATGCTCAACATCTCCACCCCCTCCACGCTCCGTTACTCTGGCGTGCGCTCACATGATACTGGTGTAGAATGCCGTGCTGGAGAGACTGTTATGTGTGAGCTGGGGAATCCACTGAGGAGCAATGAGAAGGTCTCTCTGCAGCTCATCTTTGAAACAACAGGGATCAACCTCCAAACCAGGGAGATTGAGTCTCAGTTGCTGTTGTCCACGTTGAGTGAGCAGAATGACCTGTACCCggtgtctgtggttctgttgatTGAGACCTCCATCCAGACCTCCTTCTCCATAGAGAATCCCCTGGTCCAGACCTACTTCAGCGGGGAGGTGATGGGAGAATCAGCTATGAACACGACCAGTGACGTGGGCAGTCTTGTGGAATACACCTTCAAGGTGTCAGTGGAGGGAGAGCCTCTGGGGGCGCTGGGGATCCTGGCCGTAGAGTTTGAGTGGCCCTTCGAGGTGACCAGTGGGAAGTGGCTTCTCTACCTGACTGAGATCGTCACCAAGGGGACAACTGAGACCCACTGTGTCCCTCCAGGGGACATCGTCAATCTTCTCAACCTCACAtTGTCCAAGAACAGGAGCAAACGTCCCAAGCGAGCGGTGGAGGGCGAACACCCTCGCATCATCGAGCCACAGGCTGTCCTTACCGTGCTGACTCCTCGTAAAGAGACCTACCTACTGGATTGTTCAAAGTGGACAGCCCGCTGTGTGACATTCACCTGTCCCTTGATCAACATGTCTACCTCTGCCAAGATCATTGTGAGGTCACGGGTGTGGAACAGCACTATGCTAGAGGACTATAAAAATGCTTTGAGGATTAAGGTTAGAGGTCAGGCCACACTGAAACTTGTGACGGACAACCCCACCATCAAGATGGAAAATGAGACCAGAGAGTTCATAGTGGACATTGACCCAGTCCTTGGGGTGGAAACACCTTACGAGGTTCCCCTGTGGATCATCATCGTTGCCGTGGTAGCAGGAATCCTGCTGTTAGGAGTCATCAGCATCATACTATGGAAGTGTGGCTTCTTCAGGAGGGCCAGCAGGAGGGAGATGTACGAGGCCAAAGGCCAGAAGGCTGAGATGAAGAGCCAGCCCTCAGAGACGGAGAGGCTGACTGAGGACTACTGAGACAGGAGAGGCCCCCAATGAGGGGCCATGCTACACTCCACTAGGGCGCCTGGCTTGGCTTCTTCAAGCGGGCCATCTACTACCGGATTATGCCAAAGTACCATGGAGTGAAAATCCGCAAGGAGGAACGCTACCAGTTTAACATGGGCTTCCAGCCAGAGGATCCAGACAAGAAGTACTGGATCACCAACTGGACAGAGATGCAACGTTACTACTACTGAAACCCTGACCTATGACCCTGAACTCTGAACTCTTGACCTCTGCCAAAGTTCAGGGGCATTGTGACGGAAGGACACAAGGGTTTTTGGGATGTCACACAACTTGGAGGGCACAGCACACAGACCAATTGTGAATACTGATCACTGACCACATTGATTCTGgaacctttctctcctctgtagatttcatcaaaatatttttttgtttttttttgtgcaatATGCCAAATATTCTGTTTTAGAAATTGCAATGTTTAAAGTATTTTGATGAAAGCAGTGTTGTACATTGAAAGAGTGTTTAAAAATCCCAGTTTGGTTgtaaatttgatttattttcctACCACTGCATATTTAAGTACTGAAAAAAAACTACAAATCTTTGCATGTATATTTTTCTTCCATACGATCTATCTGCAAGTTCCTGAGCAAAGTAGTTTTTTTTGTCGtcactgtttaaaaaaataatcaggTGAACGAGTCTGTAAAGAGTCTGTAAAAATTCTTAGTGAATGTACCGTTCCTTTCATATCTCTTTGTTTTAGAATGTCAGTGGTTTAGCGATGACGTCACTACAACCGTAGTTTGGGAGATTATTTTGAACTGTGCAGAGCTTTATTAATCATCAGGATGACTTTGTTATGACAGAACAATGACAGTGCCTTAAAAGAGATCGATTCAGTGATGAcactctacagtgccttcaggaagtatgcaataccccttgacttattccacatgttgttgtgttacaatgCTTGAAatcaaaaatggattaaataaataaaaagtctcACGCATCTACTCACAaaac

Function

symbol description
itga3 Enables protease binding activity and protein heterodimerization activity. Involved in several processes, including animal organ development; positive regulation of protein localization to plasma membrane; and regulation of transmembrane receptor protein serine/threonine kinase signaling pathway. Located in cell surface and filopodium membrane. Part of integrin alpha3-beta1 complex.

NR:

description
integrin alpha-3

GO: NA

KEGG:

id description
K06482 ITGA3, CD49c; integrin alpha 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946427.1 True 4401 mRNA 0.50 26 19492541 19549363

Neighbor

gene id symbol gene type direction distance location
LOC110491544 dlx4b coding upstream 62883 19424111 ~ 19429658 (+)
LOC110491542 LOC106579267 coding upstream 152037 19325249 ~ 19340504 (+)
LOC118939601 NA coding upstream 195312 19297114 ~ 19297229 (+)
mfsd13a LOC106579271 coding upstream 198274 19283071 ~ 19294267 (+)
mrpl43 mrpl43 coding upstream 251604 19239411 ~ 19240937 (+)
LOC110491549 LOC106579354 coding downstream 39003 19588366 ~ 19623529 (+)
LOC110491550 LOC106579260 coding downstream 74832 19624195 ~ 19629120 (+)
lrrc3ca LOC106579382 coding downstream 509901 20059264 ~ 20073559 (+)
csf3a LOC106579381 coding downstream 533185 20082539 ~ 20085438 (+)
LOC118939518 NA coding downstream 558710 20108073 ~ 20109188 (+)
G1349787 NA non-coding upstream 119072 19373250 ~ 19373469 (+)
G1349759 NA non-coding upstream 143088 19349129 ~ 19349453 (+)
G1349757 NA non-coding upstream 143689 19348623 ~ 19348852 (+)
G1349289 NA non-coding upstream 185697 19306624 ~ 19306844 (+)
G1349285 NA non-coding upstream 193762 19298497 ~ 19298779 (+)
G1349935 NA non-coding downstream 4883 19554246 ~ 19554562 (+)
G1350045 NA non-coding downstream 155179 19704542 ~ 19704816 (+)
G1350053 NA non-coding downstream 170417 19719780 ~ 19720567 (+)
G1350069 NA non-coding downstream 192458 19741821 ~ 19744028 (+)
G1350071 NA non-coding downstream 195855 19745218 ~ 19745523 (+)
LOC110491534 LOC105006846 other upstream 350864 19138817 ~ 19141680 (+)
LOC110491516 LOC106589273 other upstream 732121 18682058 ~ 18760420 (+)
G1348897 LOC106579309 other upstream 937089 18555177 ~ 18555452 (+)
LOC110491483 LOC106579330 other upstream 1889070 17596160 ~ 17623382 (+)
LOC110492842 LOC106579341 other upstream 2218561 17235828 ~ 17305959 (+)
G1350066 NA other downstream 187799 19737162 ~ 19738034 (+)
G1350275 NA other downstream 481367 20030730 ~ 20037978 (+)
G1351274 NA other downstream 1671402 21220765 ~ 21221147 (+)
G1351366 LOC106579206 other downstream 1852864 21402227 ~ 21405117 (+)
G1351501 LOC106579196 other downstream 2129861 21679224 ~ 21680881 (+)

Expression


Co-expression Network