LOC110491553 (LOC106579383)


Basic Information

Item Value
gene id LOC110491553
gene name LOC106579383
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 19691616 ~ 19697840 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565088.2
atttgatttgatattttcaATAGGGAAAGAGTGCTTCCGTACTCCGCTCGTTCTCGCTTGCGTAGATTGAGTTGGAAACGTGACTTTGCCGCGTCTCAAGGCGCGCGCATCAGGTAGCCTTGACCATATAAACCATCCGGATTTGGGAACAATAAAACGCACAACAAGAACACAGTGAAAACCGGTGAAGCAAGCCTGCTGCAGAATGGCCAACACACTGAGACCCTGGTTGATCCTTGTCGTCCTCGTCCTGGGCGTGCTGGTTTGTCTGGGCACTTTCACGGATGCCTACTTTACCAAGCCGGTGAGCCCCGACGACAACGCGCCtccggaggaatgggccagataCAACACAGCACTGCGACACTACATCAACCTCATCAATAGACAGAGGTATGGAAAGAGGTCTGCACCTGAGTCAGCTCTGGGGTGGTTGCTGTTCAGAGATGAGTCGGAAGGCAATTTAACACAACGTTCGGGTGGCAGTGATCTCGGATAAATCTGGGTCCCGTCCCACTGGCATGCTGTTCCACTCAAATGGTGGGCCTTACAACAACTCAAATAGGCTGCTCAACTGGCAACCTTCACTGGACTGTGTGGCCCACTATTTATTTtcaacatctctgtctctctttctcactctctcattccAACACATAATTGTCTATTTTTGGTTGTTGACATAATTTGTAATTAAATTCAACAAtgaataataaataaatgtgttATAATA
>XM_036946432.1
acaagcatgtgacgaatagaatttgatttgatattttcaATAGGGAAAGAGTGCTTCCGTACTCCGCTCGTTCTCGCTTGCGTAGATTGAGTTGGAAACGTGACTTTGCCGCGTCTCAAGGCGCGCGCATCAGGTAGCCTTGACCATATAAACCATCCGGATTTGGGAACAATAAAACGCACAACAAGAACACAGTGAAAACCGGTGAAGCAAGCCTGCTGCAGAATGGCCAACACACTGAGACCCTGGTTGATCCTTGTCGTCCTCGTCCTGGGCGTGCTGGTTTGTCTGGGCACTTTCACGGATGCCTACTTTACCAAGCCGGTGAGCCCCGACGACAACGCGCCtccggaggaatgggccagataCAACACAGCACTGCGACACTACATCAACCTCATCAATAGACAGAGGTATGGAAAGAGGTCTGCACCTGAGTCAGCTCTGGGGTGGTTGCTGTTCAGAGATGAGTCGGAAGGCAATTTAACACAACGGTGAGAGGATGAAGAGACTGAGGGAAAGGTTCGGGTGGCAGTGATCTCGGATAAATCTGGGTCCCGTCCCACTGGCATGCTGTTCCACTCAAATGGTGGGCCTTACAACAACTCAAATAGGCTGCTCAACTGGCAACCTTCACTGGACTGTGTGGCCCACTATTTATTTtcaacatctctgtctctctttctcactctctcattccAACACATAATTGTCTATTTTTGGTTGTTGACATAATTTGTAATTAAATTCAACAAtgaataataaataaatgtgttATAATA
>TU1543843
AACAAGAACACAGTGAAAACCGGTGAAGCAAGCCTGCTGCAGAATGGCCAACACACTGAGACCCTGGTTGATCCTTGTCGTCCTCGTCCTGGGCGTGCTGGTTTGTCTGGGCACTTTCACGGATGCCTACTTTACCAAGCCGGTGAGCCCCGACGACAACGCGCCtccggaggaatgggccagataCAACACAGCACTGCGACACTACATCAACCTCATCAATAGACAGAGGTATGGAAAGAGGTCTGCACCTGAGTCAGCTCTGGGGTGGTTGCTGTTCAGAGATGAGTCGGAAGGCAATTTAACACAACGTTCGGGTGGCAGTGATCTCGGATAAATCTGGGTCCCGTCCCACTGGCATGCTGTTCCACTATTTATTTtcaacatctctgtctctctttctcactctctcattccAACACA

Function

NR:

description
PREDICTED: peptide Y-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565088.2 False 733 mRNA 0.47 4 19691616 19697820
XM_036946432.1 False 782 mRNA 0.47 4 19691616 19697840
TU1543843 True 423 TUCP 0.52 5 19691692 19697658

Neighbor

gene id symbol gene type direction distance location
mpp2b LOC106579259 coding downstream 274 19636336 ~ 19691342 (-)
LOC110491548 LOC106579262 coding downstream 100720 19555092 ~ 19590896 (-)
LOC110491546 dlx3b coding downstream 251857 19437195 ~ 19439759 (-)
LOC110491545 NA coding downstream 259297 19411518 ~ 19432319 (-)
LOC110491543 LOC106579270 coding downstream 349477 19340326 ~ 19342139 (-)
tut1 tut1 coding upstream 15276 19713116 ~ 19720557 (-)
mki67 ki67 coding upstream 25994 19723834 ~ 19743882 (-)
raraa LOC100136372 coding upstream 54616 19752456 ~ 19969385 (-)
LOC110491558 LOC106579256 coding upstream 322855 20020695 ~ 20027330 (-)
top2a top2a coding upstream 332534 20030374 ~ 20054089 (-)
G1350450 NA non-coding downstream 47848 19643148 ~ 19643768 (-)
G1350445 NA non-coding downstream 57843 19632593 ~ 19633773 (-)
G1350408 NA non-coding downstream 138020 19553298 ~ 19553596 (-)
G1350361 NA non-coding downstream 174841 19478648 ~ 19516775 (-)
G1349900 NA non-coding downstream 227434 19463898 ~ 19464182 (-)
G1350629 NA non-coding upstream 247511 19945351 ~ 20006240 (-)
G1350633 NA non-coding upstream 254386 19952226 ~ 20036837 (-)
G1350665 NA non-coding upstream 309204 20007044 ~ 20007568 (-)
G1350698 NA non-coding upstream 358735 20056575 ~ 20056817 (-)
med24 med24 non-coding upstream 392655 20083758 ~ 20124534 (-)
G1349896 NA other downstream 229801 19461041 ~ 19461815 (-)
LOC110491541 LOC106579266 other downstream 366562 19310970 ~ 19325094 (-)
G1349366 NA other downstream 1057211 18634031 ~ 18634405 (-)
prr15lb atd4b other downstream 1268430 18417572 ~ 18423242 (-)
LOC110491477 psme3 other downstream 2299662 17389099 ~ 17394265 (-)
LOC110491567 LOC106579249 other upstream 632560 20330400 ~ 20334029 (-)
LOC110491585 NA other upstream 942386 20640226 ~ 20650176 (-)
h3f3d LOC107388308 other upstream 1122859 20820699 ~ 20823171 (-)
G1352220 LOC106582599 other upstream 1511623 21209463 ~ 21210794 (-)
si:ch211-183d21.3 LOC106579210 other upstream 1563224 21255836 ~ 21288348 (-)

Expression


Co-expression Network