tut1 (tut1)


Basic Information

Item Value
gene id tut1
gene name tut1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 19713116 ~ 19720557 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565091.2
CAATATCATCTTGCTGCCATCTCTTCTCTCAATATTATATTCTCTCAATCAGAAATTGAAAAGATGGCGGCATATACATTGTCAGATTACTTCATGGCGCAAATTTAGCGTTTGCTAAATTCCAAAGTTCCACCTGCAACTAGCCATGGGAGTTTAGAAAACACTGGTACCTTCCAAGCTGAATTAAGAAGTATCTGCAAGTAAAGGGTGTGTACGCTATTGTGGAATTCAGTGAGAATGACAGTCTGCAGGCCACGCTGTCCCGGTTAGAGCACGACATGAACGGTCTGAAGCTGCGGGTGAAACCCAGGGAGAACAAGGAGTTCAAACTGATCCCTAAAAAGAGGCAGGATTCCAAGAACCTGCAGCAGATACTGGAGCGGCTCACCAAAGAGCTGTGCCAGACTGCTTCGGTGAATGAACAGATGCAGAGTGTGGTGGAGCGATTCCAGTTGGGGGAGAATGAGAAAAGGGCCAGAGAGTTACTAGTGCAACTGCTCCAGGAGGTGTTTACAGAGTTCTTCCCAGATAGTCAGATCCTGGCCTTCGGTTCCTCTGTCAACACATTTGACATCCACTCCTGTGACTTGGATCTGTTCCTGGACCTGGACAACACCAAGGTGTTCCAAGCTCGGGCCAAGAATTCTTCTGAACAGGCAGGGGAAGGCCCATCGGACGACACCCGCTCTGAGGACTCCATCCTGTCCGACATCGACCTCTCCACTGCCTCGCCGGCTGAAGTGCTAGAGCTGGTGGCGGCCATCTTGAGAAAGTGCGTCCCTGGGGTGCACAAGGTCATGCCAGTCAGTGGCGCTCGCCTCCCTGTGGTTAAGTTCATCCACAAGGAGCTCAACCTCCAGGGGGACGTGACCATCAATAATAGACTGGCGGTGAGGAACACCCGTTTCCTGCAGCTGTGCTCAGGGCTGGACTCCAGGCTGCGCCCTCTGGTCTACACCGTCCGCTACTGGGCTAAACAGAAGCAGCTGGCTGGTAACCCCAGCGGTGCTGGACCCTTGCTGAATAACTATGCTCTGACACTGCTGGTGATCTTCTATCTGCAGAAGTGTGACCCTCCAGTTCTCCCCACGTTGGACCAGCTGAAGGACATGGCCTGTGAGGAAGAAGAGTGCGTGATCGAAGGCTGGAACTGCACCttccccagtcagcctattgcTGTGCCCCCCAGCAAGAACACCCAGGATCTGTgTGCCCTGCTGTCAGGCTTCTTCTCCTTCTATGCCCAGTTTGACTTTGCCAGCTCTGTCATCTCCATCAGGGAGGGCTGCTCTCTCCCTGTCACCAGCTTTCTTAGCCGAGACAAGGTAAAGGGGGAAGGGGAGGCCATGGAGCAGGAGAGGTCCTCAGGCCCCAAGCTGGGCCCCCTCAATGTGCTGGACCCCTTTGAGCTGCACCACAATGTTGCGGGCAACCTGACTGAGCGCAGCCAGAGGAGCTTTCAAAGGGAGTGCCAGGAGGCAGAGAAGTACTGCCGCAGCCTGCAGTACATGCGCAAGTCCACCAAAGGTAAGGTGTGGGGCCTGGTGCGCCTTTTCACCCCCCGGGATGAGGGCCCTCACCACCACAAGGGGGCTGAGGGGGCAGAGCGGGAACTAGCCATCAGCATCCCCTTCAAGGCGGCGTCGCTCCCCGAGGTGGTCCGCAGCCAGCTGCACTCTGCCGGGGACGGCTTCCGCTTGCTCTGGTTCCAGAGGGTGTGCTCTGCTGTGGAGGGGGTGATTCAGGGAGTCCTTAAGTGCAGCCTAACTAACACTGGCATGGGGGAAAGCACTGGAGCTGACGGAATGGATACTGCGTCTCCGATTAGCAAATCGACAAACGACCACGGTGAGAACGCCAGCCTCCTTGCCTCCAGTGACTGCAGCCCACAGAGCAAGGGCACCCCAGGAACCAAGAGACCCCTGCTGTCCTCTGAGAGCAGTGGTGACTCCGTGTCCCCGCAGGGCAAGAGGCCCAGGTTGGACAGTTACATCGGGTCCCAGCCCGATTCGCCACACTGGACCTACATCCAGAGGCACAGGGTGTGGGCGGGCCGGCGGAAGGTAAGGAGGGAGCTGCTTAAAGGGGGAATGGACATGGACTCCAGGCCAGAGGGCAGCAGTGTGGAGCTGGAGACCCAGGTGACCAAGCACATTGTGGACAAGGAGCCAGAGGACAAGGAGCCGCTCGAGTTCCAGGTTCAGGCCCAGGTGGTGGGTGGCACAGAGAGCACCAAGGCCGTGATCAAGTTTCGACCCTCTGCCGATGGTGCCGGACTGTTCCAGGACTTCTTTCACTTCCTGGAGATGTTCCTGCCCAAGATGGCCGACACACTGATGGGGAAGACTGGGTAGATGATGTCAGATGACGTCAGACTGTTTTGTAAAAGGGTTGTGTGGGTTCTGATAAACATCACTTTTAGGTTTTTTCTTCTGAATAGTGGAAGAGTGGTTGAAACTGGCCACTTTGCACTATTTTCATATTATgggagattttttgttgttgataaatCTAAAGGAGTTGTCTCTTCTCTAAAACGGATCTGACCAAGATGGCTCTGAAGTGTTATGAAAGAGCTTGAGTAATGGCTTTGATAAAGCCATGAAAATATTGTGAAAATTGATTGTGCGCTGTCATGCTATTAAGTTACGTATGTTTTACTTGTTTTAGATTAGGGTTGGCAAGTGCCCTGCAGCAATGCACTCCGTTGTATTGTTTCAGTGATTTGTTTAGTTTGACATCTTGTTTTATGGGGGTTGAAGGAAATTAAAGGCTATTGAATACTGTTCTCAACAGTTGGAATTAaatgaaaaacatattttatcAAG
>XM_021565089.2
GCACATTTACCCGGATGAGATAGCGGATGGACTAAGGAGAAGAACGCACGGTGAACGAGGGAGGGAGATttgagaaaaacatttttttttactttgttgAATTGTTTATTTGGTTTCTTGCAAAATGGAAGATTTGGACAAAGACATACGATCCACTGCGAGAGGTTTTCATTGCATCCTATGCAATGTGAATGTACCCAATAAGGCCAGTCTGGATGCCCATGTGAAAGGGCGAAAGCATGTGAAGCTGAGCACAGTGCGGGCGACTCGGAAGGCTCAGGTGGAGAACAGTGTGTTTGTCAGTGGGATCAAACCGGATACAGCTCAAGCTGACCTTGTAGACTACTTCCAAAGGTTTGGACCAGTGTCAGAAGTCATCATGGACAAAGACAAGGGTGTGTACGCTATTGTGGAATTCAGTGAGAATGACAGTCTGCAGGCCACGCTGTCCCGGTTAGAGCACGACATGAACGGTCTGAAGCTGCGGGTGAAACCCAGGGAGAACAAGGAGTTCAAACTGATCCCTAAAAAGAGGCAGGATTCCAAGAACCTGCAGCAGATACTGGAGCGGCTCACCAAAGAGCTGTGCCAGACTGCTTCGGTGAATGAACAGATGCAGAGTGTGGTGGAGCGATTCCAGTTGGGGGAGAATGAGAAAAGGGCCAGAGAGTTACTAGTGCAACTGCTCCAGGAGGTGTTTACAGAGTTCTTCCCAGATAGTCAGATCCTGGCCTTCGGTTCCTCTGTCAACACATTTGACATCCACTCCTGTGACTTGGATCTGTTCCTGGACCTGGACAACACCAAGGTGTTCCAAGCTCGGGCCAAGAATTCTTCTGAACAGGCAGGGGAAGGCCCATCGGACGACACCCGCTCTGAGGACTCCATCCTGTCCGACATCGACCTCTCCACTGCCTCGCCGGCTGAAGTGCTAGAGCTGGTGGCGGCCATCTTGAGAAAGTGCGTCCCTGGGGTGCACAAGGTCATGCCAGTCAGTGGCGCTCGCCTCCCTGTGGTTAAGTTCATCCACAAGGAGCTCAACCTCCAGGGGGACGTGACCATCAATAATAGACTGGCGGTGAGGAACACCCGTTTCCTGCAGCTGTGCTCAGGGCTGGACTCCAGGCTGCGCCCTCTGGTCTACACCGTCCGCTACTGGGCTAAACAGAAGCAGCTGGCTGGTAACCCCAGCGGTGCTGGACCCTTGCTGAATAACTATGCTCTGACACTGCTGGTGATCTTCTATCTGCAGAAGTGTGACCCTCCAGTTCTCCCCACGTTGGACCAGCTGAAGGACATGGCCTGTGAGGAAGAAGAGTGCGTGATCGAAGGCTGGAACTGCACCttccccagtcagcctattgcTGTGCCCCCCAGCAAGAACACCCAGGATCTGTgTGCCCTGCTGTCAGGCTTCTTCTCCTTCTATGCCCAGTTTGACTTTGCCAGCTCTGTCATCTCCATCAGGGAGGGCTGCTCTCTCCCTGTCACCAGCTTTCTTAGCCGAGACAAGGTAAAGGGGGAAGGGGAGGCCATGGAGCAGGAGAGGTCCTCAGGCCCCAAGCTGGGCCCCCTCAATGTGCTGGACCCCTTTGAGCTGCACCACAATGTTGCGGGCAACCTGACTGAGCGCAGCCAGAGGAGCTTTCAAAGGGAGTGCCAGGAGGCAGAGAAGTACTGCCGCAGCCTGCAGTACATGCGCAAGTCCACCAAAGGTAAGGTGTGGGGCCTGGTGCGCCTTTTCACCCCCCGGGATGAGGGCCCTCACCACCACAAGGGGGCTGAGGGGGCAGAGCGGGAACTAGCCATCAGCATCCCCTTCAAGGCGGCGTCGCTCCCCGAGGTGGTCCGCAGCCAGCTGCACTCTGCCGGGGACGGCTTCCGCTTGCTCTGGTTCCAGAGGGTGTGCTCTGCTGTGGAGGGGGTGATTCAGGGAGTCCTTAAGTGCAGCCTAACTAACACTGGCATGGGGGAAAGCACTGGAGCTGACGGAATGGATACTGCGTCTCCGATTAGCAAATCGACAAACGACCACGGTGAGAACGCCAGCCTCCTTGCCTCCAGTGACTGCAGCCCACAGAGCAAGGGCACCCCAGGAACCAAGAGACCCCTGCTGTCCTCTGAGAGCAGTGGTGACTCCGTGTCCCCGCAGGGCAAGAGGCCCAGGTTGGACAGTTACATCGGGTCCCAGCCCGATTCGCCACACTGGACCTACATCCAGAGGCACAGGGTGTGGGCGGGCCGGCGGAAGGTAAGGAGGGAGCTGCTTAAAGGGGGAATGGACATGGACTCCAGGCCAGAGGGCAGCAGTGTGGAGCTGGAGACCCAGGTGACCAAGCACATTGTGGACAAGGAGCCAGAGGACAAGGAGCCGCTCGAGTTCCAGGTTCAGGCCCAGGTGGTGGGTGGCACAGAGAGCACCAAGGCCGTGATCAAGTTTCGACCCTCTGCCGATGGTGCCGGACTGTTCCAGGACTTCTTTCACTTCCTGGAGATGTTCCTGCCCAAGATGGCCGACACACTGATGGGGAAGACTGGGTAGATGATGTCAGATGACGTCAGACTGTTTTGTAAAAGGGTTGTGTGGGTTCTGATAAACATCACTTTTAGGTTTTTTCTTCTGAATAGTGGAAGAGTGGTTGAAACTGGCCACTTTGCACTATTTTCATATTATgggagattttttgttgttgataaatCTAAAGGAGTTGTCTCTTCTCTAAAACGGATCTGACCAAGATGGCTCTGAAGTGTTATGAAAGAGCTTGAGTAATGGCTTTGATAAAGCCATGAAAATATTGTGAAAATTGATTGTGCGCTGTCATGCTATTAAGTTACGTATGTTTTACTTGTTTTAGATTAGGGTTGGCAAGTGCCCTGCAGCAATGCACTCCGTTGTATTGTTTCAGTGATTTGTTTAGTTTGACATCTTGTTTTATGGGGGTTGAAGGAAATTAAAGGCTATTGAATACTGTTCTCAACAGTTGGAATTAaatgaaaaacatattttatcAAG

Function

symbol description
tut1 Predicted to enable RNA adenylyltransferase activity; RNA uridylyltransferase activity; and mRNA 3'-UTR binding activity. Predicted to be involved in mRNA polyadenylation; pre-mRNA cleavage required for polyadenylation; and snRNA processing. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleolus. Predicted to be active in nuclear speck. Is expressed in head; ovary; and testis. Orthologous to human TUT1 (terminal uridylyl transferase 1, U6 snRNA-specific).

NR:

description
speckle targeted PIP5K1A-regulated poly(A) polymerase isoform X1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K18709 TUT1; speckle targeted PIP5K1A-regulated poly(A) polymerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565091.2 False 2828 mRNA 0.53 9 19713116 19719732
XM_021565089.2 True 3016 mRNA 0.53 10 19713116 19720557

Neighbor

gene id symbol gene type direction distance location
LOC110491553 LOC106579383 coding downstream 15276 19691616 ~ 19697840 (-)
mpp2b LOC106579259 coding downstream 21774 19636336 ~ 19691342 (-)
LOC110491548 LOC106579262 coding downstream 122220 19555092 ~ 19590896 (-)
LOC110491546 dlx3b coding downstream 273357 19437195 ~ 19439759 (-)
LOC110491545 NA coding downstream 280797 19411518 ~ 19432319 (-)
mki67 ki67 coding upstream 3277 19723834 ~ 19743882 (-)
raraa LOC100136372 coding upstream 31899 19752456 ~ 19969385 (-)
LOC110491558 LOC106579256 coding upstream 300138 20020695 ~ 20027330 (-)
top2a top2a coding upstream 309817 20030374 ~ 20054089 (-)
med24 med24 coding upstream 363201 20083758 ~ 20124534 (-)
G1350450 NA non-coding downstream 69348 19643148 ~ 19643768 (-)
G1350445 NA non-coding downstream 79343 19632593 ~ 19633773 (-)
G1350408 NA non-coding downstream 159520 19553298 ~ 19553596 (-)
G1350361 NA non-coding downstream 196341 19478648 ~ 19516775 (-)
G1349900 NA non-coding downstream 248934 19463898 ~ 19464182 (-)
G1350629 NA non-coding upstream 224794 19945351 ~ 20006240 (-)
G1350633 NA non-coding upstream 231669 19952226 ~ 20036837 (-)
G1350665 NA non-coding upstream 286487 20007044 ~ 20007568 (-)
G1350698 NA non-coding upstream 336018 20056575 ~ 20056817 (-)
G1349896 NA other downstream 251301 19461041 ~ 19461815 (-)
LOC110491541 LOC106579266 other downstream 388062 19310970 ~ 19325094 (-)
G1349366 NA other downstream 1078711 18634031 ~ 18634405 (-)
prr15lb atd4b other downstream 1289930 18417572 ~ 18423242 (-)
LOC110491567 LOC106579249 other upstream 609843 20330400 ~ 20334029 (-)
LOC110491585 NA other upstream 919669 20640226 ~ 20650176 (-)
h3f3d LOC107388308 other upstream 1100142 20820699 ~ 20823171 (-)
G1352220 LOC106582599 other upstream 1488906 21209463 ~ 21210794 (-)
si:ch211-183d21.3 LOC106579210 other upstream 1540507 21255836 ~ 21288348 (-)

Expression


Co-expression Network