LOC110491558 (LOC106579256)


Basic Information

Item Value
gene id LOC110491558
gene name LOC106579256
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 20020695 ~ 20027330 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036462.1
agattattatggataagacgAGCATCGATCATGATGCCACCAGAATAATTCCTCGACATTTACTGGAAAGGAGCATGAAACGTGCACGTTCAACACCCTTTGAAGATAGGACATGACAGGAATTTCCTTCCCCGTTGACGCCCCAGCAAGCCGACTACTAAAAGCCAACCATTATCACTGTCTAACGTGGAGTTAGACTGTGGTAATAGTCGGAGCACACTGAGGGAACCAACACAGGTTGGCtccatttttttttgtcattgcaCCTTTAATAGATGGATGATATAATGCCTAATGTTTAAAGGTTTTTCTAcagatctttttttatttttattgactgACAATATTTTGATGACTCATTGACTGCTACCCATTGATTCAAGGCTGCTTCAGGCTGAAGTACCAAATCAAAGAAGGCACCTGCCCACATAAACTAGACACCCAGAGTGTGTATGCCAGAGGCTAAAGAGTACTTCTACCAGGCTTGTACAGGAAACGGCTTATTATGACGATCTACCATGTATATGGTTGAAACGTTTGATCACGAAAGGAGCAGCGGTTTTCACTGAATTGGTTCATTTCCTAAGGAAGCTTAAAAGGAGTTGGGAAGGAGTTGAAGCAATACAGGTCATGTGAAGGACACACGTCCATGGAATTAGCCTTTGATCTGTAAATCACCCTGTTCAGATTTTTATCATCCATTTTAGTACTTCTTAAGGAAGGGCTTGTGAGCAGACTTGGCATTTTGACTTGACAACCCTGCATGCCAGTAACTCATGAGGGATAACTATTTCTGAAAATGGACTGAATATAAGTTCCACTAGACCTCCAGAGACCCCCAGAGAGCCAGGAGGAATAGCCCAGACCGAGTCCTCGCATCATGGGTGAGTGGAGCTTCCTCAGCGGCCTATTCGATGCCCTCCAGGTCCACTCCCCTATGCTGGGCCGCTTCTGGCTGCTGCTCATGCTGGTCTTCCGCATCCTCATCCTGGGCACTGTCGCCGGCGACTTGTTCGAAGACGAGCAGGGGGAGTTTGCCTGTAACACACTGCAGCCGGGCTGCAAGCAGGTGTGTTACGATGATGCCTTCCCCATCTCCCAGTACCGCTTTTGGGTGTTCCACATAGTCCTCATCTCCACGCCGTCCCTCATCTTCCTCATGTACGCCATGCACCACCACAACAAGAGGACCATGCAGTTAGGCCAGCCAAGGTTCAGCCAGCTGATTAGCAACGCTGCCAGGGAAGAGCGCCATCTCCGACAGCTCTATGTTATAAACGTGGCCTTCCGTTTGGTGACAGAAGTGGGATTTCTGGTAGGTCAGTGGTGGCTGTACGGTTTCCAGGTTGAGGCCCAGTTCCCATGCAGCCGCTTCCCATGCCCCTACACGGTGGACTGCTTCGTGTCACGCCCCATGGAAAAGACAGTCTTCCTCTGTTTCTACTTCGCCGTGGGAGTGGTTTCTGCCTTGTCCAGTTTCGTAGAGCTCGTCTACGCTTCATTGAAGTGGTTCCGTCCCACCGGGGAGCAGCCAGAGGAGCGGGTATGCGACTGTCAGAACCTCCGGAACCTGcagcaggaggaggtggagatggaggaggaggagcagaaaaGGAGGGGAAGGACCATGTCCGAGGGTGGGAGTAGTAGCGTCAGAATGAAGGGAGGGGCGGTGAGGGGCAGCGCCAGCAGGAAGGTGTCTAGCATTGGACACAAGAGCGTCGGATATCAGGGAAACAACCAGAACACCAAGACCAGTGTTTCTCCTATATTCATTTAGCAGGTGTGGAAATTGTTGCCACTGCTGCAAAAAATTATGATGTAATTTTTGGTTTTAATATATATTTCTGCCAGACACACTTTTAAATGGATAGTCGTTGACTCAGTGATTGGAAGTCTATGGGAACGGCTAGCATGTTGTGGCGCTAACGCTAGTAGAAATCAACCCCCCGCTACCCTTGCCACCACTGCTGAAAcaaatcctaggggaaacactgaagaCAGTTACGGTGTAATTTAGATTCATTTGAAAGAAATCATATATTCAATTAGACAGTGGATTTgagtacattttgatttgatttattaggatccccaatcaTTTCTCTAGAAGTGAATTATCTCTCCAATTTCAATTACAACCGAAAGAGCTCATGCTGTGTCTCTAGCCCTCACTCACCTCTTCTGTTTGACGGTGATACCCTTCTGCTGCAGCGACTTCTCATTGGTGAGCTGCAGGAGGGTAATCTCTTTGCGTTTGAACAGGTGGATGAAGAAGGCCTCCAGCAGCTTGTCCAGGGTGATGCTGAAGCCAATGACGACAGCTAGTTAATGCATGGAACTGCTTGGAGACGAGACCTGTAAACAAGTCATAACGAGACTGATTGGGCAAGACTGAGGAGGAGGATGCATGAACAACAGGGGGGGACTGATATTTGGAGCATGTACACAAAGAATCTCTGAAGTGCATACAGTATAGGCACGGTCATAACTGTGGCTCCATGGTTTCCAATAAGGCCTTCCTACATCCAGCCAATGTATTTCAGGGTTCTTGTGTGTGGACAGTGATATTTTCCAATGGCATTCAAATGTGCTGGATTATACCAAAGTATTTTGCTGTTGGCGTTTACAGCAAATGTCTTATTCATCTTGATCCATTTTATGCAGACCAAGAGTGAGTTAAAATGAAGTGCAATACAGATCAAATAACTTGAATTGAATATACTGTAACTTggtatgtgtggtgtgtatgaATCTAGTGTGCAAAATATGACCTACATGAGATCCATGATTACGTCATTTTCATAATTTAATCTCTGCTCGACTGAACCTTTGCACCCGGTGGAGAGCCAAAGAGCCTGCTACATAGTACTATGCAAGGTTTCCCGTTAAGAGTGAATGAAGAATGTTGCACACTGTCTGATACCATCGGTGTTGTGAGACTGAGTAATATCTTCTTTTCACTGGCAGTGAAACGTGTGCACATGAATATGCACAGGGGTATGCAAAGCCATTTTTGTGACATGGAAATAAATGTTTTAGAATC
>XM_036946448.1
tagattattatggataagacgAGCATCGATCATGATGCCACCAGAATAATTCCTCGACATTTACTGGAAAGGAGCATGAAACGTGCACGTTCAACACCCTTTGAAGATAGGACATGACAGGAATTTCCTTCCCCGTTGACGCCCCAGCAAGCCGACTACTAAAAGCCAACCATTATCACTGTCTAACGTGGAGTTAGACTGTGGTAATAGTCGGAGCACACTGAGGGAACCAACACAGGCTGCTTCAGGCTGAAGTACCAAATCAAAGAAGGCACCTGCCCACATAAACTAGACACCCAGAGTGTGTATGCCAGAGGCTAAAGAGTACTTCTACCAGGCTTGTACAGGAAACGGCTTATTATGACGATCTACCATGTATATGGTTGAAACGTTTGATCACGAAAGGAGCAGCGGTTTTCACTGAATTGGTTCATTTCCTAAGGAAGCTTAAAAGGAGTTGGGAAGGAGTTGAAGCAATACAGGTCATGTGAAGGACACACGTCCATGGAATTAGCCTTTGATCTGTAAATCACCCTGTTCAGATTTTTATCATCCATTTTAGTACTTCTTAAGGAAGGGCTTGTGAGCAGACTTGGCATTTTGACTTGACAACCCTGCATGCCAGTAACTCATGAGGGATAACTATTTCTGAAAATGGACTGAATATAAGTTCCACTAGACCTCCAGAGACCCCCAGAGAGCCAGGAGGAATAGCCCAGACCGAGTCCTCGCATCATGGGTGAGTGGAGCTTCCTCAGCGGCCTATTCGATGCCCTCCAGGTCCACTCCCCTATGCTGGGCCGCTTCTGGCTGCTGCTCATGCTGGTCTTCCGCATCCTCATCCTGGGCACTGTCGCCGGCGACTTGTTCGAAGACGAGCAGGGGGAGTTTGCCTGTAACACACTGCAGCCGGGCTGCAAGCAGGTGTGTTACGATGATGCCTTCCCCATCTCCCAGTACCGCTTTTGGGTGTTCCACATAGTCCTCATCTCCACGCCGTCCCTCATCTTCCTCATGTACGCCATGCACCACCACAACAAGAGGACCATGCAGTTAGGCCAGCCAAGGTTCAGCCAGCTGATTAGCAACGCTGCCAGGGAAGAGCGCCATCTCCGACAGCTCTATGTTATAAACGTGGCCTTCCGTTTGGTGACAGAAGTGGGATTTCTGGTAGGTCAGTGGTGGCTGTACGGTTTCCAGGTTGAGGCCCAGTTCCCATGCAGCCGCTTCCCATGCCCCTACACGGTGGACTGCTTCGTGTCACGCCCCATGGAAAAGACAGTCTTCCTCTGTTTCTACTTCGCCGTGGGAGTGGTTTCTGCCTTGTCCAGTTTCGTAGAGCTCGTCTACGCTTCATTGAAGTGGTTCCGTCCCACCGGGGAGCAGCCAGAGGAGCGGGTATGCGACTGTCAGAACCTCCGGAACCTGcagcaggaggaggtggagatggaggaggaggagcagaaaaGGAGGGGAAGGACCATGTCCGAGGGTGGGAGTAGTAGCGTCAGAATGAAGGGAGGGGCGGTGAGGGGCAGCGCCAGCAGGAAGGTGTCTAGCATTGGACACAAGAGCGTCGGATATCAGGGAAACAACCAGAACACCAAGACCAGTGTTTCTCCTATATTCATTTAGCAGGTGTGGAAATTGTTGCCACTGCTGCAAAAAATTATGATGTAATTTTTGGTTTTAATATATATTTCTGCCAGACACACTTTTAAATGGATAGTCGTTGACTCAGTGATTGGAAGTCTATGGGAACGGCTAGCATGTTGTGGCGCTAACGCTAGTAGAAATCAACCCCCCGCTACCCTTGCCACCACTGCTGAAAcaaatcctaggggaaacactgaagaCAGTTACGGTGTAATTTAGATTCATTTGAAAGAAATCATATATTCAATTAGACAGTGGATTTgagtacattttgatttgatttattaggatccccaatcaTTTCTCTAGAAGTGAATTATCTCTCCAATTTCAATTACAACCGAAAGAGCTCATGCTGTGTCTCTAGCCCTCACTCACCTCTTCTGTTTGACGGTGATACCCTTCTGCTGCAGCGACTTCTCATTGGTGAGCTGCAGGAGGGTAATCTCTTTGCGTTTGAACAGGTGGATGAAGAAGGCCTCCAGCAGCTTGTCCAGGGTGATGCTGAAGCCAATGACGACAGCTAGTTAATGCATGGTTGGTATTACTACAATAACGGTAACTGCAGTAACAACTTTTTCCCTTTTCGATTACAAGACCGGGAAATGAGGGGAAAGGAAATTGGCCCACACTTAAACGTATTTTCATTGGATTTACACAAATGAAGGCCCTGTGAAAGGCTAGTTCCTGTCCACGAGGTGTACATCAAATTGGGTGTACAGCAAATTGCATCACGCTCACGCTACATATACAGGAGATATGCTCCAGACCAGTGGGCCATTCTGGCTTGGACCAGGCTACTTACTTACTTTAAACAAAGGAAAgtcatgtgtaatgtaatgttattAGGTTACATGTAACAGGTTTGCAATTTCATGCACTTGGAGtactttttttgtttattttttgttggTATTTAGACAAGTTATTTCCCTAAAATGAACATAAAGGAAATACTATTTCTCTAATGTAAATTGTGGCCGGAAAAGATTTGTGTCAATACTCCATACAGGAACTGCTTGGAGACGAGACCTGTAAACAAGTCATAACGAGACTGATTGGGCAAGACTGAGGAGGAGGATGCATGAACAACAGGGGGGGACTGATATTTGGAGCATGTACACAAAGAATCTCTGAAGTGCATACAGTATAGGCACGGTCATAACTGTGGCTCCATGGTTTCCAATAAGGCCTTCCTACATCCAGCCAATGTATTTCAGGGTTCTTGTGTGTGGACAGTGATATTTTCCAATGGCATTCAAATGTGCTGGATTATACCAAAGTATTTTGCTGTTGGCGTTTACAGCAAATGTCTTATTCATCTTGATCCATTTTATGCAGACCAAGAGTGAGTTAAAATGAAGTGCAATACAGATCAAATAACTTGAATTGAATATACTGTAACTTggtatgtgtggtgtgtatgaATCTAGTGTGCAAAATATGACCTACATGAGATCCATGATTACGTCATTTTCATAATTTAATCTCTGCTCGACTGAACCTTTGCACCCGGTGGAGAGCCAAAGAGCCTGCTACATAGTACTATGCAAGGTTTCCCGTTAAGAGTGAATGAAGAATGTTGCACACTGTCTGATACCATCGGTGTTGTGAGACTGAGTAATATCTTCTTTTCACTGGCAGTGAAACGTGTGCACATGAATATGCACAGGGGTATGCAAAGCCATTTTTGTGACATGGAAATAAATGTTTTAGAATC

Function

NR:

description
gap junction delta-3 protein-like

GO: NA

KEGG:

id description
K07627 GJD3, GJC1; gap junction delta-3 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036462.1 False 3046 mRNA 0.46 5 20020695 20027329
XM_036946448.1 True 3376 mRNA 0.46 5 20020695 20027330

Neighbor

gene id symbol gene type direction distance location
raraa LOC100136372 coding downstream 51310 19752456 ~ 19969385 (-)
mki67 ki67 coding downstream 276813 19723834 ~ 19743882 (-)
tut1 tut1 coding downstream 300138 19713116 ~ 19720557 (-)
LOC110491553 LOC106579383 coding downstream 322855 19691616 ~ 19697840 (-)
mpp2b LOC106579259 coding downstream 329353 19636336 ~ 19691342 (-)
top2a top2a coding upstream 3044 20030374 ~ 20054089 (-)
med24 med24 coding upstream 56428 20083758 ~ 20124534 (-)
kcnj12a LOC106579252 coding upstream 126351 20153681 ~ 20167642 (-)
LOC110491568 NA coding upstream 258479 20285809 ~ 20286964 (-)
LOC110491567 LOC106579249 coding upstream 303075 20330400 ~ 20334029 (-)
G1350665 NA non-coding downstream 13127 20007044 ~ 20007568 (-)
G1350629 NA non-coding downstream 14455 19945351 ~ 20006240 (-)
G1350450 NA non-coding downstream 376927 19643148 ~ 19643768 (-)
G1350445 NA non-coding downstream 386922 19632593 ~ 19633773 (-)
G1350408 NA non-coding downstream 467099 19553298 ~ 19553596 (-)
G1350698 NA non-coding upstream 29245 20056575 ~ 20056817 (-)
G1350761 NA non-coding upstream 166391 20193721 ~ 20193923 (-)
G1351772 LOC106583515 non-coding upstream 211545 20238875 ~ 20239098 (-)
G1351773 NA non-coding upstream 213481 20240811 ~ 20241017 (-)
G1349896 NA other downstream 558880 19461041 ~ 19461815 (-)
LOC110491541 LOC106579266 other downstream 695641 19310970 ~ 19325094 (-)
G1349366 NA other downstream 1386290 18634031 ~ 18634405 (-)
prr15lb atd4b other downstream 1597509 18417572 ~ 18423242 (-)
LOC110491585 NA other upstream 612896 20640226 ~ 20650176 (-)
h3f3d LOC107388308 other upstream 793369 20820699 ~ 20823171 (-)
G1352220 LOC106582599 other upstream 1182133 21209463 ~ 21210794 (-)
si:ch211-183d21.3 LOC106579210 other upstream 1233734 21255836 ~ 21288348 (-)

Expression


Co-expression Network