csf3a (LOC106579381)


Basic Information

Item Value
gene id csf3a
gene name LOC106579381
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 20082539 ~ 20085438 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565105.2
acctggtcagtctatgtcatggaaagagcaggtgttcttaatgttttgtattctcAGTGTATGTCATGACAGTTCTGTTTCATTGGGCTTTTCAGATACGCATGTTTTCCTCTAATTAACATTGCCTGAGGACAGGCTCAGTTTATGGAATGTAGGAATTCCAgatagttttttttctctccagaatTTAATGACTTCAATATTGCTGGTCTACACAGCTTTTCCTAACCAAAATcagaaaatgtatgtatatatgaaCATTAAGTTATTGTCATTTGTCATAATTTGCCAACCCAGGCTCCATTGTCACTTAACACAGCTGCCGAATTCTAACACCATGCCAACACATTTTAAAGATGTTCAAGTTGTTTCAAGATTATTTTCATGTTCATATTACTATGTAGTATATATGTATTCAATTATAATGTGTTTATAATACAGCCCATTCAATTGCAATATTTTTACACTTCCAACACTTTCACCAGAAAAGATGACTGATTCAACTCGATACTGTACAGCTAGTATTGTGATAGAAAGGGAATTCCCATCAACTAGTATAAATATAGTGGGTAAAGGCTATGATGGTATCTAACAACTTGCGTTCACTGGTCGGTCAATTGTATCAGCAAATTCCTTGAAGTGCCATCAACCCAAAGGCAATGAACATTCTGATAGTTTTCGCCATTCTCTGCAACATGGCCAGCTACGGTCAAAGCGCACCGATCTTGGAGTATTCTGGCGAGGCGGGTCAACTAGTCGACGATCCAGAATTCAACCTGTCCGTAGAAAACAGCAAGAGTTTGATCAAAAAGGTGTTGGATGCTATTCCTGAGACACACACATCGTGCATTCATTCTGAGACCCTGATTCTTAACTCCAGCAGTGAGAACAGGAAACTACAATACCTGGCGATCAACCTTGGCATCCCCTCTGCTCCCACACTCAACGCCTTGACAGATAACTTTACTTTGGAGACCTGTCTGAGACGTATGTCAGAGGGACTACAGGTGCACCAGGACCTGCTAAGAGCTGTCGTACAACGCCTGGCCAACACAGAGAGAATCACTGCACTGCTGACTGATATCAGAGATCTCCGCGTACAGATCAACAGGATGCTGAAAGCGGTCCAAGTGGCGGAGAGCCCGGTGGCGGTGCAGCCCACAGCCACAAGCCTGGCCTCTCGTCTCACTGGGGACTATGAGGTTCAGGTAGCCACACATCTGACTCTGGTGCAGCTCCAAAGCTTTGGCCAGGACATAGTCCGAAGTCTAAGGAACATAGCCCAAGCAAATGGGCAGAGCGATTGACCCAAAACTGACTTGAAATTGCCATGTTTTTAtggtgatgtattttatttatttatttatgatctATTTATTATTCAGTCTATTTATGATTAGATGTGTATTTATAAAATGCttaaaatataatttaaatgCTTTTTTTACATGTTccaattacagtgcatttggaaagtattcagacccctggactttttccagattttgttacagTACAGCAATATTCAAAAAGTGActaaattgtccccccccccccctctcaaatCTACACAtata
>TU1543640
cctggattcacctggtcagtctatgtcatggaaagagcaggtgttcttaatgttttgtattctcAGTGTATGTCATGACAGTTCTGTTTCATTGGGCTTTTCAGATACGCATGTTTTCCTCTAATTAACATTGCCTGAGGACAGGCTCAGTTTATGGAATGTAGGAATTCCAgatagttttttttctctccagaatTTAATGACTTCAATATTGCTGGTCTACACAGCTTTTCCTAACC

Function

NR:

description
PREDICTED: uncharacterized protein LOC107716456

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565105.2 False 1577 mRNA 0.41 5 20082548 20085438
TU1543640 True 239 lncRNA 0.39 1 20082539 20082777

Neighbor

gene id symbol gene type direction distance location
lrrc3ca LOC106579382 coding upstream 8989 20059264 ~ 20073559 (+)
LOC110491550 LOC106579260 coding upstream 453428 19624195 ~ 19629120 (+)
LOC110491549 LOC106579354 coding upstream 459019 19588366 ~ 19623529 (+)
itga3b itga3 coding upstream 533185 19492541 ~ 19549363 (+)
LOC110491544 dlx4b coding upstream 652890 19424111 ~ 19429658 (+)
LOC118939518 NA coding downstream 22635 20108073 ~ 20109188 (+)
dnah3 dnah3 coding downstream 148566 20234004 ~ 20282891 (+)
dcun1d3 LOC106579247 coding downstream 204795 20290233 ~ 20300355 (+)
LOC110491565 LOC106579245 coding downstream 215072 20300510 ~ 20330315 (+)
LOC110491572 LOC106579244 coding downstream 261340 20346778 ~ 20354373 (+)
G1350297 NA non-coding upstream 2732 20079457 ~ 20079816 (+)
G1350294 NA non-coding upstream 6784 20075493 ~ 20075764 (+)
G1350276 top2a non-coding upstream 28471 20049079 ~ 20054077 (+)
G1350110 NA non-coding upstream 275443 19806255 ~ 19807105 (+)
G1350077 NA non-coding upstream 317316 19759658 ~ 19765232 (+)
G1350300 NA non-coding downstream 1118 20086556 ~ 20086846 (+)
G1350303 NA non-coding downstream 4311 20089749 ~ 20090153 (+)
G1350316 NA non-coding downstream 30080 20115518 ~ 20115774 (+)
G1350764 NA non-coding downstream 110500 20195938 ~ 20196411 (+)
G1350808 NA non-coding downstream 154648 20240086 ~ 20240294 (+)
G1350275 NA other upstream 44570 20030730 ~ 20037978 (+)
G1350066 NA other upstream 344514 19737162 ~ 19738034 (+)
LOC110491534 LOC105006846 other upstream 940871 19138817 ~ 19141680 (+)
LOC110491516 LOC106589273 other upstream 1322128 18682058 ~ 18760420 (+)
G1348897 LOC106579309 other upstream 1527096 18555177 ~ 18555452 (+)
G1351274 NA other downstream 1135327 21220765 ~ 21221147 (+)
G1351366 LOC106579206 other downstream 1316789 21402227 ~ 21405117 (+)
G1351501 LOC106579196 other downstream 1593786 21679224 ~ 21680881 (+)
LOC110491629 LOC106579195 other downstream 1913919 21727617 ~ 22001169 (+)
G1353021 NA other downstream 2546441 22631879 ~ 22632305 (+)

Expression


Co-expression Network