LOC110491567 (LOC106579249)


Basic Information

Item Value
gene id LOC110491567
gene name LOC106579249
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 20330400 ~ 20334029 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021565116.1
ACCTATATCAATTATCTACTAGTAACAGGCGGACAGAATTCCTGTTAAAATGCCACTTCCTCAACTGCAAAATGTAGGCTATCATGTTTTGCCATACACCTACCTATAATATCACACAAATTATGGCAATTACCATATTTTTGGTAAAACGAAAGGTTTCCAGTGATTTATCCTTAGTTGTATGTGATCGATCTTGCACATGATTAAACTATCTCAGTCATTCCAATGTGACCTGCGTCCGCCATACCGTTTTGATAGGACTGCACGGCTACAACAGCCACAAGACCAGCGCGCGCGCAAGGGCGCACTTCAGTCTGATGAGGGAGCCTAAGCGTGGTGTTCGGGTATCATCATCTTTAGTACAATAGTCACTTTGAACAACGCAGCACTTGCCACAAAGAACTAAAAATGGCAGAGGATATTGCGACTAAGCTCCAGAACTACCGCACTGCTCCCTTCGATGCCAGATTCCCCAATCAAAATCAGACAAGGAACTGCTTCTACAACTATCTGGATTATCATCGCTGCCAAAAATCCCTGGACGCCAAAGGAGTCGACACTGCCCCGTGTGACTGGTATAAGAGGGTCTACAAATCACTGTGCCCCATTTCCTGGATCCAGAAATGGGACGACCAGAGGGAGGCGGGGACCTTCCCAGGGAAAATTTGAATGGCATCTCCAAAGAAGTGTACTTCATGGCAATATGTTTGTATGAGTAGGACTCCTGGTCGGTCGTCCACTACTCCTCTGGAATGTGAGCAGAGTATAACTGAACACCGTAGTCATTCCTTATCATAGAGAATAATTGTGTTGCAGATTCTGCATTAAAGTGTCTTGGGCGATGTTTATCAAA
>TU1545321
GGGCGCACTTCAGTCTGATGAGGGAGCCTAAGCGTGGTGTTCGGGTATCATCATCTTTAGTACAATAGTCACTTTGAACAACGCAGCACTTGCCACAAAGAACTAAAAATGGCAGAGGATATTGCGACTAAGCTCCAGAACTACCGCACTGCTCCCTTCGATGCCAGATTCCCCAATCAAAATCAGACAAGGAACTGCTTCTACAACTATCTGGATTATCATCGCTGCCAAAAATCCCTGGACGCCAAAGGAGTCGACACTGCCCCGTGTGACTGGTATAAGAGGGTCTACAAATCACTGTGCCCCATTTCCTGGATCCAGAAATGGGACGACCAGAGGGAGGCGGGGACCTTCCCAGGGAAAATTTGAATGGCATCTCCAAAGAAGTGTACTTCATGGCAATATGTTTGTATGAGTAGGACTCCTGGTCGGTCGTCCACTACTCCTCTGGAATGTGAGCAGAGTATAACTGAACACCGTAGTCATTCCTTATCATAGAGAATAATTGTGTTGCAGATTCTGCATTAAAGTGTCTTGGGCGATGTTTATCAAACTGAA

Function

NR:

description
cytochrome c oxidase subunit 6B1-like

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005739 mitochondrion cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021565116.1 False 853 mRNA 0.45 4 20330405 20334029
TU1545321 True 558 TUCP 0.47 4 20330400 20333729

Neighbor

gene id symbol gene type direction distance location
LOC110491568 NA coding downstream 43441 20285809 ~ 20286964 (-)
kcnj12a LOC106579252 coding downstream 162763 20153681 ~ 20167642 (-)
med24 med24 coding downstream 205871 20083758 ~ 20124534 (-)
top2a top2a coding downstream 276316 20030374 ~ 20054089 (-)
LOC110491558 LOC106579256 coding downstream 303075 20020695 ~ 20027330 (-)
fam234a fam234a coding upstream 5080 20339109 ~ 20347491 (-)
LOC110491569 LOC106579243 coding upstream 19853 20353882 ~ 20366564 (-)
LOC110491577 LOC106579241 coding upstream 127095 20461124 ~ 20469565 (-)
LOC110491584 cxb5 coding upstream 289859 20623888 ~ 20625318 (-)
znf668 znf668 coding upstream 291707 20625736 ~ 20629535 (-)
G1351816 NA non-coding downstream 17971 20311425 ~ 20312434 (-)
G1351804 dnah3 non-coding downstream 49149 20280826 ~ 20281256 (-)
G1351802 NA non-coding downstream 49638 20280427 ~ 20280767 (-)
G1351801 NA non-coding downstream 50039 20280098 ~ 20280366 (-)
G1351798 NA non-coding downstream 53650 20276531 ~ 20276755 (-)
G1351830 NA non-coding upstream 41223 20375252 ~ 20375533 (-)
G1351832 LOC106579242 non-coding upstream 43527 20377556 ~ 20386225 (-)
G1351844 LOC106579242 non-coding upstream 60553 20394582 ~ 20402250 (-)
G1351848 NA non-coding upstream 70563 20404592 ~ 20404827 (-)
G1351852 NA non-coding upstream 81143 20415172 ~ 20415404 (-)
LOC110491553 LOC106579383 other downstream 632747 19691616 ~ 19697840 (-)
G1349896 NA other downstream 868590 19461041 ~ 19461815 (-)
LOC110491541 LOC106579266 other downstream 1005351 19310970 ~ 19325094 (-)
G1349366 NA other downstream 1696000 18634031 ~ 18634405 (-)
prr15lb atd4b other downstream 1907219 18417572 ~ 18423242 (-)
LOC110491585 NA other upstream 306197 20640226 ~ 20650176 (-)
h3f3d LOC107388308 other upstream 486670 20820699 ~ 20823171 (-)
G1352220 LOC106582599 other upstream 875434 21209463 ~ 21210794 (-)
si:ch211-183d21.3 LOC106579210 other upstream 927035 21255836 ~ 21288348 (-)
capn15 LOC106579196 other upstream 1346400 21640601 ~ 21725046 (-)

Expression


Co-expression Network